View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15856_low_12 (Length: 365)
Name: NF15856_low_12
Description: NF15856
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15856_low_12 |
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Alignment Details
Target: chr6 (Bit Score: 279; Significance: 1e-156; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 279; E-Value: 1e-156
Query Start/End: Original strand, 51 - 353
Target Start/End: Original strand, 2701574 - 2701876
Alignment:
| Q |
51 |
gtcatttttctaatgaccatataacatgactaaaaacatatatcatctttaattattagcagccttgtacattcttcattaacattgaaagtgaggtaaa |
150 |
Q |
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| T |
2701574 |
gtcatttttctaatgaccatataacatgactaaacacatatatcatctttaattattagcagccttttacattcttcattaacattgaaagtgaggtaaa |
2701673 |
T |
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| Q |
151 |
attttcatcttcttctcctttgttcaccccctgcaataataagatgaaacattaccttaaattactaatttcaaaaaacttcaagaaagtcctattatac |
250 |
Q |
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| T |
2701674 |
attttcatcttcttctcctttgttcaccccctgcaataataagatgaaacattaccttaaaatactaatttcaaaaaaattcaagaaagtcctattatac |
2701773 |
T |
|
| Q |
251 |
acaacacttacatgattggattgcaaaattgttggagggatattatgcatttctacaagttctttgctggatgatttgatttcaatatgtgtagagaaaa |
350 |
Q |
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| T |
2701774 |
acagcacttacatgattggattgcaaaattgttggagggatattatgcatttccacaagttctttgctggatgatttgatttcaatatgtgtagagaaaa |
2701873 |
T |
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| Q |
351 |
gtg |
353 |
Q |
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||| |
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| T |
2701874 |
gtg |
2701876 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 90 - 204
Target Start/End: Original strand, 2700495 - 2700609
Alignment:
| Q |
90 |
atatcatctttaattattagcagccttgtacattcttcattaacattgaaagtgaggtaaaattttcatcttcttctcctttgttcaccccctgcaataa |
189 |
Q |
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| T |
2700495 |
atatcatctttaattattagcagccttgtacattcttcattaacattgaaagtgaggtaaaattttcatcttcttctcctttgctcaccccctgcaataa |
2700594 |
T |
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| Q |
190 |
taagatgaaacatta |
204 |
Q |
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| T |
2700595 |
taacatgaaacatta |
2700609 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 246 - 353
Target Start/End: Original strand, 2700846 - 2700958
Alignment:
| Q |
246 |
tatacacaacacttacatgattggatt---gcaaaattgttggagggatattatgc--atttctacaagttctttgctggatgatttgatttcaatatgt |
340 |
Q |
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|||||||||| |||||||||||||||| |||||||||||||||||||||| ||| ||||| || |||||||||| ||||||||||||||||||||| |
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| T |
2700846 |
tatacacaactcttacatgattggattattgcaaaattgttggagggatattgtgcgcatttccacgtgttctttgcttgatgatttgatttcaatatgt |
2700945 |
T |
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| Q |
341 |
gtagagaaaagtg |
353 |
Q |
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||||| ||||||| |
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| T |
2700946 |
gtagaaaaaagtg |
2700958 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 197 - 238
Target Start/End: Original strand, 2700730 - 2700771
Alignment:
| Q |
197 |
aaacattaccttaaattactaatttcaaaaaacttcaagaaa |
238 |
Q |
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| T |
2700730 |
aaacattaccttagaataccaatttcaaaaaacttcaagaaa |
2700771 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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