View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15856_low_13 (Length: 361)

Name: NF15856_low_13
Description: NF15856
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15856_low_13
NF15856_low_13
[»] chr2 (11 HSPs)
chr2 (31-205)||(44021677-44021850)
chr2 (244-343)||(44020722-44020822)
chr2 (244-343)||(44021538-44021638)
chr2 (140-205)||(44020618-44020683)
chr2 (46-111)||(38564604-38564669)
chr2 (63-107)||(22898046-22898090)
chr2 (1-44)||(44021876-44021919)
chr2 (74-111)||(18788265-18788302)
chr2 (46-102)||(6831635-6831691)
chr2 (1-44)||(44021240-44021283)
chr2 (70-111)||(38564014-38564055)
[»] chr1 (13 HSPs)
chr1 (46-111)||(10765753-10765818)
chr1 (59-111)||(38832848-38832900)
chr1 (46-111)||(3346034-3346099)
chr1 (62-111)||(3346688-3346737)
chr1 (59-111)||(5494120-5494172)
chr1 (46-111)||(18970593-18970655)
chr1 (61-111)||(39015488-39015538)
chr1 (55-102)||(508428-508475)
chr1 (59-102)||(14188700-14188743)
chr1 (46-116)||(5489569-5489639)
chr1 (57-111)||(35908904-35908958)
chr1 (46-111)||(5493268-5493333)
chr1 (59-111)||(12214992-12215044)
[»] chr6 (7 HSPs)
chr6 (56-111)||(11589344-11589399)
chr6 (45-111)||(16260777-16260843)
chr6 (59-111)||(16264004-16264056)
chr6 (59-118)||(11313996-11314055)
chr6 (56-108)||(6052517-6052569)
chr6 (49-111)||(16242188-16242250)
chr6 (59-100)||(11308278-11308319)
[»] chr3 (12 HSPs)
chr3 (46-111)||(43020025-43020090)
chr3 (46-108)||(8237727-8237789)
chr3 (56-114)||(36656883-36656941)
chr3 (54-111)||(43021640-43021697)
chr3 (46-111)||(37521846-37521910)
chr3 (55-102)||(6515548-6515595)
chr3 (46-101)||(48117011-48117066)
chr3 (46-102)||(6515181-6515237)
chr3 (46-102)||(6746463-6746518)
chr3 (79-111)||(9011842-9011874)
chr3 (46-102)||(45713696-45713752)
chr3 (58-114)||(45715323-45715379)
[»] chr8 (7 HSPs)
chr8 (59-111)||(24409225-24409277)
chr8 (50-111)||(38214629-38214690)
chr8 (68-111)||(5180932-5180975)
chr8 (75-108)||(29760894-29760927)
chr8 (75-111)||(41829476-41829512)
chr8 (59-109)||(5182235-5182285)
chr8 (50-102)||(1566092-1566144)
[»] chr5 (6 HSPs)
chr5 (48-111)||(19516625-19516688)
chr5 (50-111)||(34799969-34800030)
chr5 (46-100)||(19986878-19986932)
chr5 (59-107)||(2807993-2808041)
chr5 (49-111)||(20454523-20454587)
chr5 (59-98)||(3959690-3959729)
[»] chr7 (9 HSPs)
chr7 (50-111)||(43071715-43071776)
chr7 (59-116)||(3303516-3303573)
chr7 (46-102)||(24790791-24790847)
chr7 (56-107)||(24252323-24252374)
chr7 (50-100)||(38796729-38796779)
chr7 (59-100)||(7579357-7579398)
chr7 (69-98)||(11060155-11060184)
chr7 (46-102)||(1507662-1507718)
chr7 (46-102)||(47413524-47413580)
[»] chr4 (11 HSPs)
chr4 (54-111)||(30926003-30926060)
chr4 (59-111)||(30925383-30925435)
chr4 (59-111)||(35603191-35603243)
chr4 (49-111)||(5371052-5371116)
chr4 (49-102)||(34293117-34293170)
chr4 (59-116)||(49605907-49605964)
chr4 (46-87)||(52307880-52307921)
chr4 (59-114)||(2215677-2215732)
chr4 (59-109)||(19655664-19655714)
chr4 (55-100)||(7017023-7017068)
chr4 (63-100)||(23630795-23630832)
[»] scaffold0010 (1 HSPs)
scaffold0010 (69-114)||(157316-157361)
[»] scaffold0112 (1 HSPs)
scaffold0112 (59-111)||(24968-25020)


Alignment Details
Target: chr2 (Bit Score: 82; Significance: 1e-38; HSPs: 11)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 31 - 205
Target Start/End: Complemental strand, 44021850 - 44021677
Alignment:
Q  31 ttgctaacttgcacttataggggactgttaacttacacccacctaaaaacatgaaggagtaagttagcaa-gcctactcccatttatttatnnnnnnnnn 129  Q
    |||||||||| |||||||||||| |||  |||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||              
T  44021850 ttgctaacttacacttatagggggctgccaacttacacccacctaaaaatatgaaggagtaagttagcaaagcctactcccatttattta--aaaaaaaa 44021753  T
Q  130 nnnnnnnnnccaacatgtactactcaaaccaactttaaatgaaagggtaagttttgtaactttcttttaatgaatt 205  Q
             ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  44021752 aaaaaaaaaccaacatgtactactcaaaccaactttaaatgaaagggtaagttttgaaactttcttttaatgaatt 44021677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 244 - 343
Target Start/End: Original strand, 44020722 - 44020822
Alignment:
Q  244 gcattgtgcttgtcgctgtcattcattctattgtgtttttggtacaggtgctaactcc-nnnnnnngtacaccacgttcatcaatttttccaggaaattt 342  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||        ||||||||||||||||||||||||||||||||||    
T  44020722 gcattgtgcttgtcgttgtcattcattctattgtgtttttggtacaggtgctaactcctttttttggtacaccacgttcatcaatttttccaggaaattt 44020821  T
Q  343 t 343  Q
    |    
T  44020822 t 44020822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 244 - 343
Target Start/End: Complemental strand, 44021638 - 44021538
Alignment:
Q  244 gcattgtgcttgtcgctgtcattcattctattgtgtttttggtacaggtgctaactcc-nnnnnnngtacaccacgttcatcaatttttccaggaaattt 342  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||        ||||||||||||||||||||||||||||||||||    
T  44021638 gcattgtgcttgtcgttgtcattcattctattgtgtttttggtacaggtgctaactcctttttttggtacaccacgttcatcaatttttccaggaaattt 44021539  T
Q  343 t 343  Q
    |    
T  44021538 t 44021538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 140 - 205
Target Start/End: Original strand, 44020618 - 44020683
Alignment:
Q  140 caacatgtactactcaaaccaactttaaatgaaagggtaagttttgtaactttcttttaatgaatt 205  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44020618 caacatgtactactcaaaccaactttaaatgaaagggtaagttttgtaactttcttttaatgaatt 44020683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 46 - 111
Target Start/End: Complemental strand, 38564669 - 38564604
Alignment:
Q  46 tataggggactgttaacttacacccacctaaaaacatgaaggagtaagttagcaagcctactccca 111  Q
    ||||||||  || ||||||||  |||||||||||||||||||||||||||||||||  ||||||||    
T  38564669 tatagggggatgctaacttacttccacctaaaaacatgaaggagtaagttagcaaggttactccca 38564604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 63 - 107
Target Start/End: Original strand, 22898046 - 22898090
Alignment:
Q  63 ttacacccacctaaaaacatgaaggagtaagttagcaagcctact 107  Q
    |||| ||||||||||||||||||||||||||||| ||||||||||    
T  22898046 ttactcccacctaaaaacatgaaggagtaagttaacaagcctact 22898090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 44
Target Start/End: Complemental strand, 44021919 - 44021876
Alignment:
Q  1 aatgagtgtaaataattaaataggtgcagtttgctaacttgcac 44  Q
    |||||||||||||||||||||||||| || ||||||||||||||    
T  44021919 aatgagtgtaaataattaaataggtgtagattgctaacttgcac 44021876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 74 - 111
Target Start/End: Complemental strand, 18788302 - 18788265
Alignment:
Q  74 taaaaacatgaaggagtaagttagcaagcctactccca 111  Q
    |||||||||||| |||||||||||||||||||||||||    
T  18788302 taaaaacatgaaagagtaagttagcaagcctactccca 18788265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 46 - 102
Target Start/End: Complemental strand, 6831691 - 6831635
Alignment:
Q  46 tataggggactgttaacttacacccacctaaaaacatgaaggagtaagttagcaagc 102  Q
    |||||||| ||| |||||||||||||||||||||||  |||| | ||||||||||||    
T  6831691 tatagggggctgctaacttacacccacctaaaaacaccaaggtgcaagttagcaagc 6831635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 1 - 44
Target Start/End: Complemental strand, 44021283 - 44021240
Alignment:
Q  1 aatgagtgtaaataattaaataggtgcagtttgctaacttgcac 44  Q
    |||||||||||||||| ||||||||| || ||||||||||||||    
T  44021283 aatgagtgtaaataatcaaataggtgtagattgctaacttgcac 44021240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 70 - 111
Target Start/End: Original strand, 38564014 - 38564055
Alignment:
Q  70 cacctaaaaacatgaaggagtaagttagcaagcctactccca 111  Q
    |||| ||||||||||||||||||| || ||||||||||||||    
T  38564014 cacccaaaaacatgaaggagtaaggtaacaagcctactccca 38564055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 50; Significance: 1e-19; HSPs: 13)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 46 - 111
Target Start/End: Original strand, 10765753 - 10765818
Alignment:
Q  46 tataggggactgttaacttacacccacctaaaaacatgaaggagtaagttagcaagcctactccca 111  Q
    |||| ||| ||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  10765753 tatatggggctgctaacttactcccacctaaaaacatgaaggagtaagttagcaagcctactccca 10765818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 59 - 111
Target Start/End: Original strand, 38832848 - 38832900
Alignment:
Q  59 taacttacacccacctaaaaacatgaaggagtaagttagcaagcctactccca 111  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  38832848 taacttactcccacctaaaaacatgaaggagtaagttagcaagcctactccca 38832900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 46 - 111
Target Start/End: Original strand, 3346034 - 3346099
Alignment:
Q  46 tataggggactgttaacttacacccacctaaaaacatgaaggagtaagttagcaagcctactccca 111  Q
    ||||| || ||| |||||||  ||||||||||||||||||||||||||||||||| ||||||||||    
T  3346034 tatagagggctgctaacttagtcccacctaaaaacatgaaggagtaagttagcaaccctactccca 3346099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 62 - 111
Target Start/End: Complemental strand, 3346737 - 3346688
Alignment:
Q  62 cttacacccacctaaaaacatgaaggagtaagttagcaagcctactccca 111  Q
    ||||| ||||||||||||||||||||||||||||||||| ||||||||||    
T  3346737 cttactcccacctaaaaacatgaaggagtaagttagcaaccctactccca 3346688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 59 - 111
Target Start/End: Complemental strand, 5494172 - 5494120
Alignment:
Q  59 taacttacacccacctaaaaacatgaaggagtaagttagcaagcctactccca 111  Q
    |||||||  |||||| |||||||||||||||||||||||||||||||||||||    
T  5494172 taacttattcccacccaaaaacatgaaggagtaagttagcaagcctactccca 5494120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 46 - 111
Target Start/End: Complemental strand, 18970655 - 18970593
Alignment:
Q  46 tataggggactgttaacttacacccacctaaaaacatgaaggagtaagttagcaagcctactccca 111  Q
    ||||||||| || |||||||| |||||||||||||||   ||||||||||||||| ||||||||||    
T  18970655 tataggggattgctaacttactcccacctaaaaacat---ggagtaagttagcaaacctactccca 18970593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 61 - 111
Target Start/End: Complemental strand, 39015538 - 39015488
Alignment:
Q  61 acttacacccacctaaaaacatgaaggagtaagttagcaagcctactccca 111  Q
    |||||| |||||| |||| |||||||||||||||||||||| |||||||||    
T  39015538 acttactcccacccaaaatcatgaaggagtaagttagcaagtctactccca 39015488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 55 - 102
Target Start/End: Original strand, 508428 - 508475
Alignment:
Q  55 ctgttaacttacacccacctaaaaacatgaaggagtaagttagcaagc 102  Q
    |||||||||||||||||||||||||||  |||| | ||||||||||||    
T  508428 ctgttaacttacacccacctaaaaacactaaggtgcaagttagcaagc 508475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 59 - 102
Target Start/End: Original strand, 14188700 - 14188743
Alignment:
Q  59 taacttacacccacctaaaaacatgaaggagtaagttagcaagc 102  Q
    |||||||||||||||||||||||| |||| | ||||||||||||    
T  14188700 taacttacacccacctaaaaacattaaggtgcaagttagcaagc 14188743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 46 - 116
Target Start/End: Original strand, 5489569 - 5489639
Alignment:
Q  46 tataggggactgttaacttacacccacctaaaaacatgaaggagtaagttagcaagcctactcccatttat 116  Q
    |||||||| ||| |||| ||| || | | ||||| ||||||||||||||||||||| ||||||||| ||||    
T  5489569 tatagggggctgctaacctactccaatccaaaaatatgaaggagtaagttagcaagtctactcccacttat 5489639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 57 - 111
Target Start/End: Original strand, 35908904 - 35908958
Alignment:
Q  57 gttaacttacacccacctaaaaacatgaaggagtaagttagcaagcctactccca 111  Q
    |||||||||| |||| |||||| |||||||||||||| ||||||| || ||||||    
T  35908904 gttaacttactcccatctaaaatcatgaaggagtaagatagcaagtcttctccca 35908958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 46 - 111
Target Start/End: Original strand, 5493268 - 5493333
Alignment:
Q  46 tataggggactgttaacttacacccacctaaaaacatgaaggagtaagttagcaagcctactccca 111  Q
    |||| ||| ||| |||||||| || ||| ||||| |||||| |||||||||||||| |||||||||    
T  5493268 tatatggggctgctaacttactccaacccaaaaatatgaagcagtaagttagcaagtctactccca 5493333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 59 - 111
Target Start/End: Original strand, 12214992 - 12215044
Alignment:
Q  59 taacttacacccacctaaaaacatgaaggagtaagttagcaagcctactccca 111  Q
    |||||||| |||||  |||||||||| |||||||||||||||  |||||||||    
T  12214992 taacttactcccactcaaaaacatgatggagtaagttagcaactctactccca 12215044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 48; Significance: 2e-18; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 56 - 111
Target Start/End: Complemental strand, 11589399 - 11589344
Alignment:
Q  56 tgttaacttacacccacctaaaaacatgaaggagtaagttagcaagcctactccca 111  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||    
T  11589399 tgttaacttactcccacctaaaaacatgaaggagtaagttagcaagcttactccca 11589344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 45 - 111
Target Start/End: Original strand, 16260777 - 16260843
Alignment:
Q  45 ttataggggactgttaacttacacccacctaaaaacatgaaggagtaagttagcaagcctactccca 111  Q
    ||||||||| ||| |||||||| |||||| |||||||||||||||| ||||||||||| ||||||||    
T  16260777 ttatagggggctgctaacttactcccacccaaaaacatgaaggagtgagttagcaagcatactccca 16260843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 59 - 111
Target Start/End: Complemental strand, 16264056 - 16264004
Alignment:
Q  59 taacttacacccacctaaaaacatgaaggagtaagttagcaagcctactccca 111  Q
    |||||||| |||||| ||||||||||| |||||||||| ||||||||||||||    
T  16264056 taacttactcccacccaaaaacatgaatgagtaagttatcaagcctactccca 16264004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 59 - 118
Target Start/End: Complemental strand, 11314055 - 11313996
Alignment:
Q  59 taacttacacccacctaaaaacatgaaggagtaagttagcaagcctactcccatttattt 118  Q
    |||||||| | |||||||||| ||||| ||||||||||||||| ||||||||| ||||||    
T  11314055 taacttactctcacctaaaaatatgaaagagtaagttagcaagtctactcccacttattt 11313996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 56 - 108
Target Start/End: Complemental strand, 6052569 - 6052517
Alignment:
Q  56 tgttaacttacacccacctaaaaacatgaaggagtaagttagcaagcctactc 108  Q
    ||||||||||| | |||| |||| |||||| ||||||||||||||||||||||    
T  6052569 tgttaacttactctcacccaaaatcatgaaagagtaagttagcaagcctactc 6052517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 49 - 111
Target Start/End: Complemental strand, 16242250 - 16242188
Alignment:
Q  49 aggggactgttaacttacacccacctaaaaacatgaaggagtaagttagcaagcctactccca 111  Q
    ||||| ||| |||||||| |||||| ||||| || |||||  |||||||||||||||||||||    
T  16242250 agggggctgctaacttactcccaccaaaaaatataaaggataaagttagcaagcctactccca 16242188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 59 - 100
Target Start/End: Original strand, 11308278 - 11308319
Alignment:
Q  59 taacttacacccacctaaaaacatgaaggagtaagttagcaa 100  Q
    |||||||| ||||| |||||||| ||||||||||||||||||    
T  11308278 taacttactcccacttaaaaacacgaaggagtaagttagcaa 11308319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 46; Significance: 4e-17; HSPs: 12)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 46 - 111
Target Start/End: Original strand, 43020025 - 43020090
Alignment:
Q  46 tataggggactgttaacttacacccacctaaaaacatgaaggagtaagttagcaagcctactccca 111  Q
    |||| ||| ||| |||||||| ||||||||||||||||||||||||||||||||||| ||||||||    
T  43020025 tatatggggctgctaacttactcccacctaaaaacatgaaggagtaagttagcaagcatactccca 43020090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 46 - 108
Target Start/End: Original strand, 8237727 - 8237789
Alignment:
Q  46 tataggggactgttaacttacacccacctaaaaacatgaaggagtaagttagcaagcctactc 108  Q
    |||||||| |||||||||||| |||||||||||| |||||||| ||||||||||||| |||||    
T  8237727 tatagggggctgttaacttactcccacctaaaaatatgaaggaataagttagcaagcttactc 8237789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 56 - 114
Target Start/End: Complemental strand, 36656941 - 36656883
Alignment:
Q  56 tgttaacttacacccacctaaaaacatgaaggagtaagttagcaagcctactcccattt 114  Q
    ||||||||||| | ||||||||||||||||| |||||||||||||||||| ||||||||    
T  36656941 tgttaacttactctcacctaaaaacatgaagaagtaagttagcaagcctaatcccattt 36656883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 54 - 111
Target Start/End: Complemental strand, 43021697 - 43021640
Alignment:
Q  54 actgttaacttacacccacctaaaaacatgaaggagtaagttagcaagcctactccca 111  Q
    |||| |||||||| ||||| ||||||||||||||||||||||||||||||||| ||||    
T  43021697 actgctaacttactcccacttaaaaacatgaaggagtaagttagcaagcctacaccca 43021640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 46 - 111
Target Start/End: Original strand, 37521846 - 37521910
Alignment:
Q  46 tataggggactgttaacttacacccacctaaaaacatgaaggagtaagttagcaagcctactccca 111  Q
    |||| ||| ||| |||||||| |||||| |||||||||||||||||||||||||| ||||||||||    
T  37521846 tatatggggctgctaacttactcccacccaaaaacatgaaggagtaagttagcaa-cctactccca 37521910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 55 - 102
Target Start/End: Complemental strand, 6515595 - 6515548
Alignment:
Q  55 ctgttaacttacacccacctaaaaacatgaaggagtaagttagcaagc 102  Q
    |||||||||||||||||||||||||||| |||| | ||||||||||||    
T  6515595 ctgttaacttacacccacctaaaaacattaaggtgcaagttagcaagc 6515548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 46 - 101
Target Start/End: Original strand, 48117011 - 48117066
Alignment:
Q  46 tataggggactgttaacttacacccacctaaaaacatgaaggagtaagttagcaag 101  Q
    |||||||| ||| ||||||||||||||||||||| || |||| |||||||||||||    
T  48117011 tatagggggctgataacttacacccacctaaaaatattaaggtgtaagttagcaag 48117066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 46 - 102
Target Start/End: Original strand, 6515181 - 6515237
Alignment:
Q  46 tataggggactgttaacttacacccacctaaaaacatgaaggagtaagttagcaagc 102  Q
    |||| |||||||||||||||||| || ||||||| || |||| | ||||||||||||    
T  6515181 tatatgggactgttaacttacactcatctaaaaatattaaggtgcaagttagcaagc 6515237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 46 - 102
Target Start/End: Original strand, 6746463 - 6746518
Alignment:
Q  46 tataggggactgttaacttacacccacctaaaaacatgaaggagtaagttagcaagc 102  Q
    |||||||| ||| |||||||||||||||||||||||  |||| | ||||||||||||    
T  6746463 tatagggg-ctgctaacttacacccacctaaaaacactaaggtgcaagttagcaagc 6746518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 79 - 111
Target Start/End: Original strand, 9011842 - 9011874
Alignment:
Q  79 acatgaaggagtaagttagcaagcctactccca 111  Q
    ||||||||||||||||||||||| |||||||||    
T  9011842 acatgaaggagtaagttagcaagtctactccca 9011874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 46 - 102
Target Start/End: Original strand, 45713696 - 45713752
Alignment:
Q  46 tataggggactgttaacttacacccacctaaaaacatgaaggagtaagttagcaagc 102  Q
    |||||||| ||| | |||||||||||||||||||||  |||| | ||||||||||||    
T  45713696 tatagggggctgctgacttacacccacctaaaaacactaaggtgcaagttagcaagc 45713752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 58 - 114
Target Start/End: Complemental strand, 45715379 - 45715323
Alignment:
Q  58 ttaacttacacccacctaaaaacatgaaggagtaagttagcaagcctactcccattt 114  Q
    ||||||||  |||| | ||||| || |||||||||||||||||| ||||||||||||    
T  45715379 ttaacttattcccatccaaaaatataaaggagtaagttagcaagtctactcccattt 45715323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 45; Significance: 1e-16; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 59 - 111
Target Start/End: Original strand, 24409225 - 24409277
Alignment:
Q  59 taacttacacccacctaaaaacatgaaggagtaagttagcaagcctactccca 111  Q
    |||||||| |||||| |||||||||||||||||||||||||||||||||||||    
T  24409225 taacttactcccacccaaaaacatgaaggagtaagttagcaagcctactccca 24409277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 50 - 111
Target Start/End: Original strand, 38214629 - 38214690
Alignment:
Q  50 ggggactgttaacttacacccacctaaaaacatgaaggagtaagttagcaagcctactccca 111  Q
    |||| ||| ||||||||  ||||| |||||||||||||||||||||||||||||||||||||    
T  38214629 gggggctgctaacttacttccacccaaaaacatgaaggagtaagttagcaagcctactccca 38214690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 68 - 111
Target Start/End: Original strand, 5180932 - 5180975
Alignment:
Q  68 cccacctaaaaacatgaaggagtaagttagcaagcctactccca 111  Q
    |||||||||||||||||| |||||||||||||||||||||||||    
T  5180932 cccacctaaaaacatgaaagagtaagttagcaagcctactccca 5180975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 75 - 108
Target Start/End: Original strand, 29760894 - 29760927
Alignment:
Q  75 aaaaacatgaaggagtaagttagcaagcctactc 108  Q
    ||||||||||||||||||||||||||||||||||    
T  29760894 aaaaacatgaaggagtaagttagcaagcctactc 29760927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 75 - 111
Target Start/End: Complemental strand, 41829512 - 41829476
Alignment:
Q  75 aaaaacatgaaggagtaagttagcaagcctactccca 111  Q
    ||||||||||||||||||||||||||| |||||||||    
T  41829512 aaaaacatgaaggagtaagttagcaagtctactccca 41829476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 59 - 109
Target Start/End: Complemental strand, 5182285 - 5182235
Alignment:
Q  59 taacttacacccacctaaaaacatgaaggagtaagttagcaagcctactcc 109  Q
    |||||||  ||||||||||||| ||||||| ||||||||||| ||||||||    
T  5182285 taacttattcccacctaaaaacgtgaaggattaagttagcaaccctactcc 5182235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 50 - 102
Target Start/End: Complemental strand, 1566144 - 1566092
Alignment:
Q  50 ggggactgttaacttacacccacctaaaaacatgaaggagtaagttagcaagc 102  Q
    |||| ||| |||||||||||||||||||||||  |||| | ||||||||||||    
T  1566144 gggggctgctaacttacacccacctaaaaacactaaggtgcaagttagcaagc 1566092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 44; Significance: 6e-16; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 48 - 111
Target Start/End: Complemental strand, 19516688 - 19516625
Alignment:
Q  48 taggggactgttaacttacacccacctaaaaacatgaaggagtaagttagcaagcctactccca 111  Q
    |||||| |||||||||||| |||||  ||||||||||||||||||||||||||| |||||||||    
T  19516688 tagggggctgttaacttactcccacacaaaaacatgaaggagtaagttagcaagtctactccca 19516625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 50 - 111
Target Start/End: Original strand, 34799969 - 34800030
Alignment:
Q  50 ggggactgttaacttacacccacctaaaaacatgaaggagtaagttagcaagcctactccca 111  Q
    |||| ||| |||||||| ||||||||||| ||||||||||||||||| ||||||||||||||    
T  34799969 gggggctgctaacttactcccacctaaaatcatgaaggagtaagttaccaagcctactccca 34800030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 46 - 100
Target Start/End: Complemental strand, 19986932 - 19986878
Alignment:
Q  46 tataggggactgttaacttacacccacctaaaaacatgaaggagtaagttagcaa 100  Q
    ||||||||  || |||||||| |||||||||||||||||||||||||||||||||    
T  19986932 tatagggggttgctaacttactcccacctaaaaacatgaaggagtaagttagcaa 19986878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 59 - 107
Target Start/End: Original strand, 2807993 - 2808041
Alignment:
Q  59 taacttacacccacctaaaaacatgaaggagtaagttagcaagcctact 107  Q
    |||||||| | |||||||||||| |||||||||||||||||||||||||    
T  2807993 taacttactctcacctaaaaacacgaaggagtaagttagcaagcctact 2808041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 49 - 111
Target Start/End: Complemental strand, 20454587 - 20454523
Alignment:
Q  49 aggggactgttaacttacacccacctaaaaaca--tgaaggagtaagttagcaagcctactccca 111  Q
    ||||| ||| |||||||| || |||||||||||  |||||||| |||||||||||||||||||||    
T  20454587 agggggctgctaacttactccaacctaaaaacacatgaaggagaaagttagcaagcctactccca 20454523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 59 - 98
Target Start/End: Complemental strand, 3959729 - 3959690
Alignment:
Q  59 taacttacacccacctaaaaacatgaaggagtaagttagc 98  Q
    |||||||| |||||| ||||||||||||||||||||||||    
T  3959729 taacttactcccaccaaaaaacatgaaggagtaagttagc 3959690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 42; Significance: 0.000000000000009; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 50 - 111
Target Start/End: Complemental strand, 43071776 - 43071715
Alignment:
Q  50 ggggactgttaacttacacccacctaaaaacatgaaggagtaagttagcaagcctactccca 111  Q
    |||||||| |||||||| | |||| |||||||||||||||||||||||||| ||||||||||    
T  43071776 ggggactgctaacttactctcacccaaaaacatgaaggagtaagttagcaaccctactccca 43071715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 59 - 116
Target Start/End: Complemental strand, 3303573 - 3303516
Alignment:
Q  59 taacttacacccacctaaaaacatgaaggagtaagttagcaagcctactcccatttat 116  Q
    |||||||| | || ||||||||||||| || ||||||||||||||||||| |||||||    
T  3303573 taacttactctcatctaaaaacatgaaagactaagttagcaagcctactctcatttat 3303516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 46 - 102
Target Start/End: Original strand, 24790791 - 24790847
Alignment:
Q  46 tataggggactgttaacttacacccacctaaaaacatgaaggagtaagttagcaagc 102  Q
    |||| ||| ||||||||||||| |||||||||||||  |||| ||||||||||||||    
T  24790791 tatatggggctgttaacttacatccacctaaaaacactaaggtgtaagttagcaagc 24790847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 56 - 107
Target Start/End: Original strand, 24252323 - 24252374
Alignment:
Q  56 tgttaacttacacccacctaaaaacatgaaggagtaagttagcaagcctact 107  Q
    ||||||||||| || ||| |||||||||||||||||| ||| ||||||||||    
T  24252323 tgttaacttactccgacccaaaaacatgaaggagtaaattaacaagcctact 24252374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 50 - 100
Target Start/End: Complemental strand, 38796779 - 38796729
Alignment:
Q  50 ggggactgttaacttacacccacctaaaaacatgaaggagtaagttagcaa 100  Q
    |||| ||| |||||||||||||||||||||||| |||| | ||||||||||    
T  38796779 gggggctgctaacttacacccacctaaaaacattaaggtgcaagttagcaa 38796729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 59 - 100
Target Start/End: Complemental strand, 7579398 - 7579357
Alignment:
Q  59 taacttacacccacctaaaaacatgaaggagtaagttagcaa 100  Q
    ||||||||  ||||||||| ||||||||||||||||||||||    
T  7579398 taacttactaccacctaaacacatgaaggagtaagttagcaa 7579357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 69 - 98
Target Start/End: Original strand, 11060155 - 11060184
Alignment:
Q  69 ccacctaaaaacatgaaggagtaagttagc 98  Q
    ||||||||||||||||||||||||||||||    
T  11060155 ccacctaaaaacatgaaggagtaagttagc 11060184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 46 - 102
Target Start/End: Complemental strand, 1507718 - 1507662
Alignment:
Q  46 tataggggactgttaacttacacccacctaaaaacatgaaggagtaagttagcaagc 102  Q
    |||||||| ||| ||||||||||||| |||||||||  |||| | ||||||||||||    
T  1507718 tatagggggctgctaacttacacccatctaaaaacactaaggtgcaagttagcaagc 1507662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 46 - 102
Target Start/End: Complemental strand, 47413580 - 47413524
Alignment:
Q  46 tataggggactgttaacttacacccacctaaaaacatgaaggagtaagttagcaagc 102  Q
    |||||||| |||||||||| ||||||||||||||||  |||| | |||||| |||||    
T  47413580 tatagggggctgttaacttgcacccacctaaaaacactaaggtgcaagttaacaagc 47413524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 42; Significance: 0.000000000000009; HSPs: 11)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 54 - 111
Target Start/End: Complemental strand, 30926060 - 30926003
Alignment:
Q  54 actgttaacttacacccacctaaaaacatgaaggagtaagttagcaagcctactccca 111  Q
    |||| |||||||| |||| ||||||||||||||||||||||||||||| |||||||||    
T  30926060 actgctaacttactcccatctaaaaacatgaaggagtaagttagcaagtctactccca 30926003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 59 - 111
Target Start/End: Original strand, 30925383 - 30925435
Alignment:
Q  59 taacttacacccacctaaaaacatgaaggagtaagttagcaagcctactccca 111  Q
    |||||||| |||||||||||| || ||||||||||||||||||||||||||||    
T  30925383 taacttactcccacctaaaaatattaaggagtaagttagcaagcctactccca 30925435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 59 - 111
Target Start/End: Complemental strand, 35603243 - 35603191
Alignment:
Q  59 taacttacacccacctaaaaacatgaaggagtaagttagcaagcctactccca 111  Q
    |||||||| |||||| |||||||||||||||||||||||||||| || |||||    
T  35603243 taacttactcccacccaaaaacatgaaggagtaagttagcaagcttattccca 35603191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 49 - 111
Target Start/End: Complemental strand, 5371116 - 5371052
Alignment:
Q  49 aggggactgttaacttacacccacctaaaaaca--tgaaggagtaagttagcaagcctactccca 111  Q
    ||||| ||| |||||||| || |||||||||||  |||||||| |||||||||||||||||||||    
T  5371116 agggggctgctaacttactccaacctaaaaacacatgaaggagaaagttagcaagcctactccca 5371052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 49 - 102
Target Start/End: Original strand, 34293117 - 34293170
Alignment:
Q  49 aggggactgttaacttacacccacctaaaaacatgaaggagtaagttagcaagc 102  Q
    ||||| ||| |||||||||||||||||||||||| |||| | ||||||||||||    
T  34293117 agggggctgctaacttacacccacctaaaaacattaaggtgcaagttagcaagc 34293170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 59 - 116
Target Start/End: Complemental strand, 49605964 - 49605907
Alignment:
Q  59 taacttacacccacctaaaaacatgaaggagtaagttagcaagcctactcccatttat 116  Q
    |||||||| |||||| ||||||||| ||||||||||||| ||| ||||||||| ||||    
T  49605964 taacttactcccacccaaaaacatggaggagtaagttagaaagtctactcccacttat 49605907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 46 - 87
Target Start/End: Complemental strand, 52307921 - 52307880
Alignment:
Q  46 tataggggactgttaacttacacccacctaaaaacatgaagg 87  Q
    |||||||| |||||||||||||||||||||||||||| ||||    
T  52307921 tatagggggctgttaacttacacccacctaaaaacattaagg 52307880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 59 - 114
Target Start/End: Complemental strand, 2215732 - 2215677
Alignment:
Q  59 taacttacacccacctaaaaacatgaaggagtaagttagcaagcctactcccattt 114  Q
    |||||||| | |||||||||| | ||||||||||| ||||||||||||| ||||||    
T  2215732 taacttactctcacctaaaaatacgaaggagtaagctagcaagcctacttccattt 2215677  T

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Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 59 - 109
Target Start/End: Complemental strand, 19655714 - 19655664
Alignment:
Q  59 taacttacacccacctaaaaacatgaaggagtaagttagcaagcctactcc 109  Q
    |||||||| |||||||||||  |||||| |||||||||||||| |||||||    
T  19655714 taacttactcccacctaaaaggatgaagtagtaagttagcaagtctactcc 19655664  T

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Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 55 - 100
Target Start/End: Original strand, 7017023 - 7017068
Alignment:
Q  55 ctgttaacttacacccacctaaaaacatgaaggagtaagttagcaa 100  Q
    |||||||||||||||||||||||||||  |||| | ||||||||||    
T  7017023 ctgttaacttacacccacctaaaaacactaaggtgcaagttagcaa 7017068  T

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Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 63 - 100
Target Start/End: Original strand, 23630795 - 23630832
Alignment:
Q  63 ttacacccacctaaaaacatgaaggagtaagttagcaa 100  Q
    |||||||||||||||||||| ||||||||| |||||||    
T  23630795 ttacacccacctaaaaacattaaggagtaaattagcaa 23630832  T

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Target: scaffold0010 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: scaffold0010
Description:

Target: scaffold0010; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 69 - 114
Target Start/End: Complemental strand, 157361 - 157316
Alignment:
Q  69 ccacctaaaaacatgaaggagtaagttagcaagcctactcccattt 114  Q
    |||||||||||||||||||||||||||||||| || ||||||||||    
T  157361 ccacctaaaaacatgaaggagtaagttagcaaacccactcccattt 157316  T

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Target: scaffold0112 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0112
Description:

Target: scaffold0112; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 59 - 111
Target Start/End: Original strand, 24968 - 25020
Alignment:
Q  59 taacttacacccacctaaaaacatgaaggagtaagttagcaagcctactccca 111  Q
    ||||||||||||||  ||||||||  ||||||||||||||||  |||||||||    
T  24968 taacttacacccactcaaaaacatacaggagtaagttagcaaatctactccca 25020  T

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