View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15856_low_17 (Length: 351)
Name: NF15856_low_17
Description: NF15856
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15856_low_17 |
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Alignment Details
Target: chr4 (Bit Score: 182; Significance: 2e-98; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 18 - 203
Target Start/End: Original strand, 37285747 - 37285932
Alignment:
| Q |
18 |
gtttgcatatagaaaaaactataagagggaacttgcctttggaagtagaagagttgatgattaaggaaaggagaagcatgtgtgaggttacagcacgtgg |
117 |
Q |
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| T |
37285747 |
gtttgcatatagaaaaaactataagagggaacttgcctttggaagtagaagagttgatgattaaggaaaggagaagcatgtgtgaggttacagcacgtgg |
37285846 |
T |
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| Q |
118 |
cagccatttaatcttgttctatagttagttagtagtcacaacaacacaaacacaagctctttcatttcatcacgtattttcctata |
203 |
Q |
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| T |
37285847 |
cagccatttaatcttcttctatagttagttagtagtcacaacaacacaaacacaagctctttcatttcatcacgtattttcctata |
37285932 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 129; E-Value: 1e-66
Query Start/End: Original strand, 203 - 342
Target Start/End: Original strand, 37285961 - 37286101
Alignment:
| Q |
203 |
accaatgaagtagataaacttagtaaagtgaagctgaagacaacaaaacaaagtaagcaagttttatgaagttgtg-aaactggagatgatttcatacca |
301 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
37285961 |
accaatgaagtagataaacttagtaaagtgaagctgaagacaacaaaacaaagtaagcaagttttatgaagttgtgaaaactggagatgatttcatacca |
37286060 |
T |
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| Q |
302 |
tatcctcttactacaatccttccatggaccactagaataat |
342 |
Q |
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| T |
37286061 |
tatcctcttactacaatccttccatggaccactaggataat |
37286101 |
T |
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