View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15856_low_19 (Length: 336)

Name: NF15856_low_19
Description: NF15856
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15856_low_19
NF15856_low_19
[»] scaffold0064 (1 HSPs)
scaffold0064 (24-108)||(12614-12698)
[»] chr4 (4 HSPs)
chr4 (24-108)||(23845290-23845374)
chr4 (53-109)||(18451506-18451562)
chr4 (24-109)||(7164180-7164265)
chr4 (24-92)||(18544963-18545031)
[»] scaffold0053 (1 HSPs)
scaffold0053 (24-108)||(31862-31946)
[»] chr8 (5 HSPs)
chr8 (24-108)||(23449833-23449917)
chr8 (24-108)||(24494940-24495024)
chr8 (24-108)||(34300400-34300484)
chr8 (24-92)||(19865690-19865758)
chr8 (42-92)||(19872626-19872676)
[»] chr2 (4 HSPs)
chr2 (24-108)||(23211212-23211296)
chr2 (24-108)||(23844371-23844455)
chr2 (24-108)||(24431903-24431987)
chr2 (24-92)||(26862366-26862434)
[»] scaffold0436 (1 HSPs)
scaffold0436 (24-108)||(1309-1393)
[»] chr7 (3 HSPs)
chr7 (24-108)||(16477861-16477945)
chr7 (24-109)||(5506745-5506829)
chr7 (24-92)||(42827-42895)
[»] chr1 (1 HSPs)
chr1 (24-108)||(32410086-32410170)
[»] scaffold0149 (1 HSPs)
scaffold0149 (24-108)||(37144-37228)
[»] chr3 (2 HSPs)
chr3 (24-108)||(12164253-12164337)
chr3 (24-92)||(13295918-13295986)
[»] scaffold0670 (1 HSPs)
scaffold0670 (24-92)||(5396-5464)
[»] scaffold0035 (1 HSPs)
scaffold0035 (24-92)||(16901-16969)
[»] scaffold0001 (1 HSPs)
scaffold0001 (24-92)||(140383-140451)
[»] scaffold0639 (1 HSPs)
scaffold0639 (54-108)||(3641-3695)
[»] scaffold0827 (1 HSPs)
scaffold0827 (24-92)||(3904-3972)


Alignment Details
Target: scaffold0064 (Bit Score: 73; Significance: 3e-33; HSPs: 1)
Name: scaffold0064
Description:

Target: scaffold0064; HSP #1
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 24 - 108
Target Start/End: Original strand, 12614 - 12698
Alignment:
Q  24 acattattatgacggtaagatccggtaccggcatgcatgtatgtctaggaatgaagtatgttgcatataggtcatgttaggtgaa 108  Q
    |||||||||||||| || ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  12614 acattattatgacgttaggatccggtaccggcatgcatgtaggtctaggaatgaagtatgttgcatataggtcatgttaggtgaa 12698  T

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Target: chr4 (Bit Score: 73; Significance: 3e-33; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 24 - 108
Target Start/End: Original strand, 23845290 - 23845374
Alignment:
Q  24 acattattatgacggtaagatccggtaccggcatgcatgtatgtctaggaatgaagtatgttgcatataggtcatgttaggtgaa 108  Q
    |||||||||||||| || ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  23845290 acattattatgacgataggatccggtaccggcatgcatgtaggtctaggaatgaagtatgttgcatataggtcatgttaggtgaa 23845374  T

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Target: chr4; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 53 - 109
Target Start/End: Complemental strand, 18451562 - 18451506
Alignment:
Q  53 ggcatgcatgtatgtctaggaatgaagtatgttgcatataggtcatgttaggtgaat 109  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  18451562 ggcatgcatgtatgtctaggaatgaagtatgttgcatataggtcatgttagatgaat 18451506  T

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Target: chr4; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 24 - 109
Target Start/End: Original strand, 7164180 - 7164265
Alignment:
Q  24 acattattatgacggtaagatccggtaccggcatgcatgtatgtctaggaatgaagtatgttgcatataggtcatgttaggtgaat 109  Q
    |||||||||||||| || |||||||||||| ||| ||| || |||||||||||||||||| |||||||| |||| |||||||||||    
T  7164180 acattattatgacgctaggatccggtaccgacatccatttaagtctaggaatgaagtatgctgcatatatgtcaggttaggtgaat 7164265  T

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Target: chr4; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 24 - 92
Target Start/End: Original strand, 18544963 - 18545031
Alignment:
Q  24 acattattatgacggtaagatccggtaccggcatgcatgtatgtctaggaatgaagtatgttgcatata 92  Q
    |||||||||||||| || |||| |||||||||||||||||| ||||||||| |||| ||||||||||||    
T  18544963 acattattatgacgataggatcaggtaccggcatgcatgtaggtctaggaaagaagcatgttgcatata 18545031  T

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Target: scaffold0053 (Bit Score: 69; Significance: 6e-31; HSPs: 1)
Name: scaffold0053
Description:

Target: scaffold0053; HSP #1
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 24 - 108
Target Start/End: Complemental strand, 31946 - 31862
Alignment:
Q  24 acattattatgacggtaagatccggtaccggcatgcatgtatgtctaggaatgaagtatgttgcatataggtcatgttaggtgaa 108  Q
    |||||||||||||| || ||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||    
T  31946 acattattatgacgataggatccggtaccggcatgcatgtaggtctagggatgaagtatgttgcatataggtcatgttaggtgaa 31862  T

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Target: chr8 (Bit Score: 69; Significance: 6e-31; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 24 - 108
Target Start/End: Complemental strand, 23449917 - 23449833
Alignment:
Q  24 acattattatgacggtaagatccggtaccggcatgcatgtatgtctaggaatgaagtatgttgcatataggtcatgttaggtgaa 108  Q
    |||||||||||||| || ||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||    
T  23449917 acattattatgacgataggatccggtaccggcatgcatgtaggtctagggatgaagtatgttgcatataggtcatgttaggtgaa 23449833  T

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Target: chr8; HSP #2
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 24 - 108
Target Start/End: Complemental strand, 24495024 - 24494940
Alignment:
Q  24 acattattatgacggtaagatccggtaccggcatgcatgtatgtctaggaatgaagtatgttgcatataggtcatgttaggtgaa 108  Q
    |||||||||||||| || ||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||    
T  24495024 acattattatgacgataggatccggtaccggcatgcatgtaggtctagggatgaagtatgttgcatataggtcatgttaggtgaa 24494940  T

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Target: chr8; HSP #3
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 24 - 108
Target Start/End: Complemental strand, 34300484 - 34300400
Alignment:
Q  24 acattattatgacggtaagatccggtaccggcatgcatgtatgtctaggaatgaagtatgttgcatataggtcatgttaggtgaa 108  Q
    |||||||||||||| || |||| ||||||||||||||||||  |||||| |||||||||||||||||||||| ||||||||||||    
T  34300484 acattattatgacgataggatctggtaccggcatgcatgtagatctagggatgaagtatgttgcatataggttatgttaggtgaa 34300400  T

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Target: chr8; HSP #4
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 24 - 92
Target Start/End: Complemental strand, 19865758 - 19865690
Alignment:
Q  24 acattattatgacggtaagatccggtaccggcatgcatgtatgtctaggaatgaagtatgttgcatata 92  Q
    |||||||||||||| || ||||||||||||||||||||||| |||||||||||||  ||||||||||||    
T  19865758 acattattatgacgataggatccggtaccggcatgcatgtaggtctaggaatgaaccatgttgcatata 19865690  T

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Target: chr8; HSP #5
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 42 - 92
Target Start/End: Complemental strand, 19872676 - 19872626
Alignment:
Q  42 gatccggtaccggcatgcatgtatgtctaggaatgaagtatgttgcatata 92  Q
    ||||||||||||||||||||||| |||||||||||||  ||||||||||||    
T  19872676 gatccggtaccggcatgcatgtaggtctaggaatgaaccatgttgcatata 19872626  T

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Target: chr2 (Bit Score: 69; Significance: 6e-31; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 24 - 108
Target Start/End: Original strand, 23211212 - 23211296
Alignment:
Q  24 acattattatgacggtaagatccggtaccggcatgcatgtatgtctaggaatgaagtatgttgcatataggtcatgttaggtgaa 108  Q
    |||||||||||||| || ||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||    
T  23211212 acattattatgacgataggatccggtaccggcatgcatgtaggtctagggatgaagtatgttgcatataggtcatgttaggtgaa 23211296  T

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Target: chr2; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 24 - 108
Target Start/End: Complemental strand, 23844455 - 23844371
Alignment:
Q  24 acattattatgacggtaagatccggtaccggcatgcatgtatgtctaggaatgaagtatgttgcatataggtcatgttaggtgaa 108  Q
    |||||||||||||| || ||||||||||||||||||||||| ||||||| |||||||||||||||||||| ||||||||||||||    
T  23844455 acattattatgacgataggatccggtaccggcatgcatgtaggtctaggtatgaagtatgttgcatatagttcatgttaggtgaa 23844371  T

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Target: chr2; HSP #3
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 24 - 108
Target Start/End: Original strand, 24431903 - 24431987
Alignment:
Q  24 acattattatgacggtaagatccggtaccggcatgcatgtatgtctaggaatgaagtatgttgcatataggtcatgttaggtgaa 108  Q
    |||||||||||||| || |||||||||||| |||||||||| ||||||| ||||||||||||||||||||||| |||||||||||    
T  24431903 acattattatgacgataggatccggtaccgacatgcatgtaagtctagggatgaagtatgttgcatataggtcttgttaggtgaa 24431987  T

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Target: chr2; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 24 - 92
Target Start/End: Original strand, 26862366 - 26862434
Alignment:
Q  24 acattattatgacggtaagatccggtaccggcatgcatgtatgtctaggaatgaagtatgttgcatata 92  Q
    |||| ||||||||| || ||||||||||||||||||||||| ||||||| | |||| ||||||||||||    
T  26862366 acatcattatgacgatatgatccggtaccggcatgcatgtaggtctagggaagaagcatgttgcatata 26862434  T

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Target: scaffold0436 (Bit Score: 65; Significance: 2e-28; HSPs: 1)
Name: scaffold0436
Description:

Target: scaffold0436; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 24 - 108
Target Start/End: Original strand, 1309 - 1393
Alignment:
Q  24 acattattatgacggtaagatccggtaccggcatgcatgtatgtctaggaatgaagtatgttgcatataggtcatgttaggtgaa 108  Q
    |||||||||||||| || ||||||||||| ||||||||||| ||||||| |||||||||||||||||||||||||||||||||||    
T  1309 acattattatgacgataggatccggtaccagcatgcatgtaggtctagggatgaagtatgttgcatataggtcatgttaggtgaa 1393  T

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Target: chr7 (Bit Score: 65; Significance: 2e-28; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 24 - 108
Target Start/End: Complemental strand, 16477945 - 16477861
Alignment:
Q  24 acattattatgacggtaagatccggtaccggcatgcatgtatgtctaggaatgaagtatgttgcatataggtcatgttaggtgaa 108  Q
    |||||||||||||| || |||||||||||| |||||| ||| |||||||||||||||||||||||||||||||||||||||||||    
T  16477945 acattattatgacgataggatccggtaccgccatgcaggtaggtctaggaatgaagtatgttgcatataggtcatgttaggtgaa 16477861  T

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Target: chr7; HSP #2
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 24 - 109
Target Start/End: Complemental strand, 5506829 - 5506745
Alignment:
Q  24 acattattatgacggtaagatccggtaccggcatgcatgtatgtctaggaatgaagtatgttgcatataggtcatgttaggtgaat 109  Q
    ||||||||||||||||| |||| ||||| |||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||    
T  5506829 acattattatgacggtaggatc-ggtactggcatgcatgtaggtctaggaatgaagtatgttgcatataggtcatattaggtgaat 5506745  T

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Target: chr7; HSP #3
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 24 - 92
Target Start/End: Original strand, 42827 - 42895
Alignment:
Q  24 acattattatgacggtaagatccggtaccggcatgcatgtatgtctaggaatgaagtatgttgcatata 92  Q
    |||||||||||||| || ||||||||||||||||||||||| |||||||||||||  ||||||||||||    
T  42827 acattattatgacgataggatccggtaccggcatgcatgtaggtctaggaatgaaccatgttgcatata 42895  T

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Target: chr1 (Bit Score: 65; Significance: 2e-28; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 24 - 108
Target Start/End: Complemental strand, 32410170 - 32410086
Alignment:
Q  24 acattattatgacggtaagatccggtaccggcatgcatgtatgtctaggaatgaagtatgttgcatataggtcatgttaggtgaa 108  Q
    |||||||||||||| || ||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||| |||||||||    
T  32410170 acattattatgacgataggatccggtaccggcatgcatgtaggtctagggatgaagtatgttgcatataggtcattttaggtgaa 32410086  T

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Target: scaffold0149 (Bit Score: 61; Significance: 4e-26; HSPs: 1)
Name: scaffold0149
Description:

Target: scaffold0149; HSP #1
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 24 - 108
Target Start/End: Original strand, 37144 - 37228
Alignment:
Q  24 acattattatgacggtaagatccggtaccggcatgcatgtatgtctaggaatgaagtatgttgcatataggtcatgttaggtgaa 108  Q
    |||||||||||||| || ||| ||||||| ||||||||||| ||||||| |||||||||||||||||||||||||||||||||||    
T  37144 acattattatgacgataggattcggtaccagcatgcatgtaggtctagggatgaagtatgttgcatataggtcatgttaggtgaa 37228  T

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Target: chr3 (Bit Score: 61; Significance: 4e-26; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 24 - 108
Target Start/End: Complemental strand, 12164337 - 12164253
Alignment:
Q  24 acattattatgacggtaagatccggtaccggcatgcatgtatgtctaggaatgaagtatgttgcatataggtcatgttaggtgaa 108  Q
    |||||||||| ||| || ||||||||||||||||||||||| ||||||| ||||||||||| |||||||||||||||||||||||    
T  12164337 acattattataacgataggatccggtaccggcatgcatgtaggtctagggatgaagtatgtcgcatataggtcatgttaggtgaa 12164253  T

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Target: chr3; HSP #2
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 24 - 92
Target Start/End: Complemental strand, 13295986 - 13295918
Alignment:
Q  24 acattattatgacggtaagatccggtaccggcatgcatgtatgtctaggaatgaagtatgttgcatata 92  Q
    |||||||||||||| || ||||||||||||||||||||||| |||||||||||||  ||||||||||||    
T  13295986 acattattatgacgataggatccggtaccggcatgcatgtaggtctaggaatgaaccatgttgcatata 13295918  T

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Target: scaffold0670 (Bit Score: 49; Significance: 5e-19; HSPs: 1)
Name: scaffold0670
Description:

Target: scaffold0670; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 24 - 92
Target Start/End: Complemental strand, 5464 - 5396
Alignment:
Q  24 acattattatgacggtaagatccggtaccggcatgcatgtatgtctaggaatgaagtatgttgcatata 92  Q
    |||||||||||||| || ||||||||||||||||||||||| |||||||||||||  ||||||||||||    
T  5464 acattattatgacgataggatccggtaccggcatgcatgtaggtctaggaatgaaccatgttgcatata 5396  T

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Target: scaffold0035 (Bit Score: 49; Significance: 5e-19; HSPs: 1)
Name: scaffold0035
Description:

Target: scaffold0035; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 24 - 92
Target Start/End: Original strand, 16901 - 16969
Alignment:
Q  24 acattattatgacggtaagatccggtaccggcatgcatgtatgtctaggaatgaagtatgttgcatata 92  Q
    |||||||||||||| || ||||||||||||||||||||||| |||||||||||||  ||||||||||||    
T  16901 acattattatgacgataggatccggtaccggcatgcatgtaggtctaggaatgaaccatgttgcatata 16969  T

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Target: scaffold0001 (Bit Score: 49; Significance: 5e-19; HSPs: 1)
Name: scaffold0001
Description:

Target: scaffold0001; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 24 - 92
Target Start/End: Original strand, 140383 - 140451
Alignment:
Q  24 acattattatgacggtaagatccggtaccggcatgcatgtatgtctaggaatgaagtatgttgcatata 92  Q
    |||||||||||||| || ||||||||||||||||||||||| |||||||||||||  ||||||||||||    
T  140383 acattattatgacgataggatccggtaccggcatgcatgtaggtctaggaatgaaccatgttgcatata 140451  T

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Target: scaffold0639 (Bit Score: 47; Significance: 8e-18; HSPs: 1)
Name: scaffold0639
Description:

Target: scaffold0639; HSP #1
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 54 - 108
Target Start/End: Original strand, 3641 - 3695
Alignment:
Q  54 gcatgcatgtatgtctaggaatgaagtatgttgcatataggtcatgttaggtgaa 108  Q
    ||||||||||| ||||||| |||||||||||||||||||||||||||||||||||    
T  3641 gcatgcatgtaggtctagggatgaagtatgttgcatataggtcatgttaggtgaa 3695  T

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Target: scaffold0827 (Bit Score: 37; Significance: 0.000000000008; HSPs: 1)
Name: scaffold0827
Description:

Target: scaffold0827; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 24 - 92
Target Start/End: Complemental strand, 3972 - 3904
Alignment:
Q  24 acattattatgacggtaagatccggtaccggcatgcatgtatgtctaggaatgaagtatgttgcatata 92  Q
    |||||||||| ||| || |||| |||||||||||||||||| || ||||||||||  ||||||||||||    
T  3972 acattattataacgataggatctggtaccggcatgcatgtaggtataggaatgaaccatgttgcatata 3904  T

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