View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15856_low_2 (Length: 582)
Name: NF15856_low_2
Description: NF15856
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15856_low_2 |
 | |
|
| [»] scaffold0172 (1 HSPs) |
| | |
|
Alignment Details
Target: chr3 (Bit Score: 457; Significance: 0; HSPs: 7)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 457; E-Value: 0
Query Start/End: Original strand, 85 - 562
Target Start/End: Original strand, 53415485 - 53415964
Alignment:
| Q |
85 |
ttcaaagttgaatgaaaagattgatgaacttcaggcgataatactctttagaatttggaagccttggtgtgaatgaatttcttgtcactggctcattttg |
184 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
53415485 |
ttcaaagttgaatgaaaagattgatgaacttcaggcgataatactctttagaatttggaagccttggtgtgaatgaatttcttgtcactggctcattttg |
53415584 |
T |
|
| Q |
185 |
ttttaaatttagagagcatgcaaacatatacttggagctaacttgctttttaattgtaggctgatttgaagaagctgaaaatagatttggaaagggcaag |
284 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
53415585 |
ttttaaatttagagagcatgcaaacatatacttggagctaacttgctttttaattgtaggctgatttgaagaagctgaaaatagatttggaaagggcaag |
53415684 |
T |
|
| Q |
285 |
aaaagaaaagaaaagccacctctaacgagttcggatgggaagaacaaaaagaacttgaaactgaagcgtaataaacagcttccttaacatctttggacat |
384 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
53415685 |
aaaagataagaaaagccacctctaacgagttcggatgggaagaacaaaaagaacttgaaactgaagcgtaataaacagcttccttaacatctttggacat |
53415784 |
T |
|
| Q |
385 |
tataattatcaagtgtaatgtgtgattgtgatctatgtatcgtacgggatagagaaaagatatctcaaaccagagcaaaaattaagaaaatgcagcatg- |
483 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
53415785 |
tataattatcaagtgtaatgtgtgattgtgatctatgtatcgtacaggatagagaaaagatatctcaaaccagcgcaaaaattaagaaaatgcagcatga |
53415884 |
T |
|
| Q |
484 |
-atgcatacaaaagaagatctaaaaactgtggcacttggcacgtccccaagataaactacctagatcccaggatatcagt |
562 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
53415885 |
tatgcatacaaaagaagatctaaaaactgtggcacttggcacgtccccaagataaactacctagatcccaggatatcagt |
53415964 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 206; E-Value: 1e-112
Query Start/End: Original strand, 85 - 562
Target Start/End: Original strand, 53411756 - 53412238
Alignment:
| Q |
85 |
ttcaaagttgaatgaaaagattgatgaacttcaggcgataatactctttagaatttggaagccttggtgtgaatgaatttcttgtcactggctcattttg |
184 |
Q |
| |
|
||||||||| ||||||||||||| ||||||||||| ||||||||| |||||| ||||||| ||||||||| ||||||||||| |||||||||||||||| |
|
|
| T |
53411756 |
ttcaaagttaaatgaaaagattgttgaacttcaggtgataatactatttagagtttggaaaccttggtgtaaatgaatttctcgtcactggctcatttta |
53411855 |
T |
|
| Q |
185 |
tttta----aatttagagagcatgcaaacatatacttggagctaacttgctttttaattgtaggctgatttgaagaagctgaaaatagatttggaaaggg |
280 |
Q |
| |
|
||||| ||||||||| ||||| | ||||||||||||| | |||||||||||||||||||||| ||||| | ||||||||||||||||| |||||| |
|
|
| T |
53411856 |
ttttattttaatttagagggcatgtagacatatacttggattttacttgctttttaattgtaggcttctttgagggagctgaaaatagatttgaaaaggg |
53411955 |
T |
|
| Q |
281 |
caagaaaagaaaagaaaagccacctctaacgagttcggatgggaagaacaaaaagaacttgaaac-tgaagcgtaataaacagcttccttaacatctttg |
379 |
Q |
| |
|
||||||||||||| ||||||||||||||||||| |||||||| || ||||||||| | |||||||||||| |||||||||||| |||||| |
|
|
| T |
53411956 |
caagaaaagaaaatt-----cacctctaacgagttcggacgggaagaa---aaggaacttgaatcctgaagcgtaatatacagcttccttagtatcttta |
53412047 |
T |
|
| Q |
380 |
gacattataattatcaagt-------gtaatgtgtgattgtgatctatgtatcgtacgggatagag-aaaagatatctcaaaccagagcaaaaattaaga |
471 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||| ||||| | ||| |||||||| |||||||| |||||||||| ||||||||| ||| |
|
|
| T |
53412048 |
cacattataattatcaagtataatgactaatgtgtgattgtgaattatgtcacctacaggatagagaaaaagataactcaaaccagcgcaaaaattgaga |
53412147 |
T |
|
| Q |
472 |
aaatgcagcatg--atgcatacaaaagaagatctaaaaactgtggcacttggcacgtccccaagataaactacctagatcccaggatatcagt |
562 |
Q |
| |
|
||||||| | || |||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
53412148 |
aaatgcaacgtgatatgcatacgaaagaagatctaaaaactgtggcacttggcacgt--ccaagataaactacctagatcccaggatatcagt |
53412238 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 184; E-Value: 3e-99
Query Start/End: Original strand, 85 - 550
Target Start/End: Complemental strand, 53367054 - 53366586
Alignment:
| Q |
85 |
ttcaaagttgaatgaaaagattgatgaacttcaggcgataatactctttagaatttggaagccttggtgtgaatgaatttcttgtcactggctcattttg |
184 |
Q |
| |
|
|||||| || ||||||||||||| ||||||||||| ||||||||| |||||||||||||| ||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
53367054 |
ttcaaaattaaatgaaaagattgttgaacttcaggtgataatactatttagaatttggaaaccttggtgtaaatgaatttcttgtcactggctcatttta |
53366955 |
T |
|
| Q |
185 |
tttta---aatttagagagcatgcaaacatatacttggagctaacttgctttttaattgtaggctgatttgaagaagctgaaaatagatttggaaagggc |
281 |
Q |
| |
|
|||| ||||||| | ||||| || ||||| |||||| || ||||||||||||||| |||||| | ||| | ||||||||||||||||| ||| ||| |
|
|
| T |
53366954 |
ttttttttaatttagtgggcatgtaa-catattcttggatctgacttgctttttaattttaggcttttctgagggagctgaaaatagatttgaaaaaggc |
53366856 |
T |
|
| Q |
282 |
aagaaaagaaaagaaaagccacctctaacgagttcggatgggaagaacaaaaagaacttgaa-actgaagcgtaataaacagcttccttaacatctttgg |
380 |
Q |
| |
|
||||||||||||| ||||||||||||||||||| |||||| |||| ||||||||| ||||||||||||| ||| |||||||| |||||| |
|
|
| T |
53366855 |
aagaaaagaaaagt-----cacctctaacgagttcggacgggaag---aaaaggaacttgaatcctgaagcgtaatatacaccttccttagtatctttac |
53366764 |
T |
|
| Q |
381 |
acattataattatcaa-------gtgtaatgtgtgattgtgatctatgtatcgtacgggatagag-aaaagatatctcaaaccagagcaaaaattaagaa |
472 |
Q |
| |
|
|||||||||||||||| | ||||||||||||||||| |||||| | ||| |||||||| |||||||| |||||||||| ||||||||| |||| |
|
|
| T |
53366763 |
acattataattatcaattataatgactaatgtgtgattgtgatttatgtaacctacaggatagagaaaaagataactcaaaccagcgcaaaaattgagaa |
53366664 |
T |
|
| Q |
473 |
aatgcagcatg--atgcatacaaaagaagatctaaaaactgtggcacttggcacgtccccaagataaactacctagatcc |
550 |
Q |
| |
|
|||||| | || ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
53366663 |
aatgcaacgtgatatgcatacaaaagaagatctaaaaactgtggcacttggcacgt--ccaagataaactacctagatcc |
53366586 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 14 - 66
Target Start/End: Original strand, 53415445 - 53415497
Alignment:
| Q |
14 |
atcatcagtgtagtgtttcaaaaattcacagtgaacaaatttcaaagttgaat |
66 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
53415445 |
atcatcagtgtagtgtttcaaaaattcacagtgaacaaatttcaaagttgaat |
53415497 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 89 - 370
Target Start/End: Original strand, 53318262 - 53318534
Alignment:
| Q |
89 |
aagttgaatgaaaagattgatgaacttcaggcgataatactctttagaatttggaagccttggtgtgaatgaatttcttgtcactggctcattttgtttt |
188 |
Q |
| |
|
|||||||| |||||||| || |||||||||| |||||| |||||||||| ||| |||||||||| |||||| |||||||||| | || ||| |
|
|
| T |
53318262 |
aagttgaacgaaaagatcgacgaacttcaggtgataat--------gaatttggaaacctgggtgtgaatggatttctcgtcactggcttgtattatttg |
53318353 |
T |
|
| Q |
189 |
aaatttagagagcatgcaaacatatacttggagctaact----tgctttttaattgtaggctgatttgaagaagctgaaaatagatttggaaagggcaag |
284 |
Q |
| |
|
|||||||||| | | || ||||||||| |||||| || | |||||||||||||||| ||| |||| |||||||||||||||| |||||||| |
|
|
| T |
53318354 |
aaatttagagggaaaa-aaccatatacttagagctagctgtcttactttttaattgtaggcaaattagaaggagctgaaaatagatttagaaagggc--- |
53318449 |
T |
|
| Q |
285 |
aaaagaaaagaaaagccacctctaacgagttcggatgggaagaacaaaaagaacttgaa-actgaagcgtaataaacagcttcctta |
370 |
Q |
| |
|
|| |||| ||||||||||||||| | ||||||| ||||| ||| | |||||| || ||||||||||||| |||||||||||| |
|
|
| T |
53318450 |
--aaaaaaacaaaagccacctctaaagtgttcggacaggaaggacaggaggaactttaatcctgaagcgtaatatacagcttcctta |
53318534 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 14 - 65
Target Start/End: Original strand, 53318218 - 53318269
Alignment:
| Q |
14 |
atcatcagtgtagtgtttcaaaaattcacagtgaacaaatttcaaagttgaa |
65 |
Q |
| |
|
||||||| |||||||||||||| |||||||||||||||||| |||||||| |
|
|
| T |
53318218 |
atcatcaacgtagtgtttcaaaatctcacagtgaacaaatttcgaagttgaa |
53318269 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 25 - 62
Target Start/End: Original strand, 53411727 - 53411764
Alignment:
| Q |
25 |
agtgtttcaaaaattcacagtgaacaaatttcaaagtt |
62 |
Q |
| |
|
||||||||||||| |||||||| ||||||||||||||| |
|
|
| T |
53411727 |
agtgtttcaaaaaatcacagtgcacaaatttcaaagtt |
53411764 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 90; Significance: 3e-43; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 85 - 289
Target Start/End: Original strand, 14922913 - 14923115
Alignment:
| Q |
85 |
ttcaaagttgaatgaaaagattgatgaacttcaggcgataatactctttagaatttggaagccttggtgtgaatgaatttcttgtcactggctcattttg |
184 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||| ||||||| |||||||||||||||| || ||||||| || ||||||| |||| ||||||||||| |
|
|
| T |
14922913 |
ttcaaagttgaatgaaaagattgatgaacttaaggtgataatattctttagaatttggaaaccatggtgtggatcaatttctcctcaccggctcattttg |
14923012 |
T |
|
| Q |
185 |
ttttaaatttagagagcatgcaaacatatacttggagctaacttgctttttaattgtaggctgatttgaagaagctgaaaatagatttggaaagggcaag |
284 |
Q |
| |
|
||| |||||||||| ||||| ||||||||||| | |||| || |||| |||||||||||| ||||||| ||||||||| ||||| || ||||||| |
|
|
| T |
14923013 |
tttgaaatttagagggcatgtaaacatatactcgaagctgac--actttgtaattgtaggctcttttgaaggagctgaaaacagattacgacagggcaaa |
14923110 |
T |
|
| Q |
285 |
aaaag |
289 |
Q |
| |
|
||||| |
|
|
| T |
14923111 |
aaaag |
14923115 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 405 - 562
Target Start/End: Original strand, 14923221 - 14923379
Alignment:
| Q |
405 |
tgtgattgtgatctatgtatcgtacgggatagagaaaa-gatatctcaaaccagagcaaaaattaagaaaatgcagcatgat--gcatacaaaagaagat |
501 |
Q |
| |
|
|||||||||||| |||||| | ||| ||||| |||||| ||| ||||||||| |||||||||||||||||| | | |||| | || ||||||||| |
|
|
| T |
14923221 |
tgtgattgtgatttatgtaacatacaggataaagaaaaagatggatcaaaccagcgcaaaaattaagaaaatggaacgtgatatgatgactaaagaagat |
14923320 |
T |
|
| Q |
502 |
ctaaaaactgtggcacttggcacgtccccaagataaactacctagatcccaggatatcagt |
562 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
14923321 |
ttaaaaactgtggcacttggcacgtcc--aagataaactacctagatcccaggatatcagt |
14923379 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0172 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0172
Description:
Target: scaffold0172; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 238 - 289
Target Start/End: Complemental strand, 2844 - 2793
Alignment:
| Q |
238 |
ttgtaggctgatttgaagaagctgaaaatagatttggaaagggcaagaaaag |
289 |
Q |
| |
|
|||||||||||| ||||| |||||||| |||||||||| |||||||| |||| |
|
|
| T |
2844 |
ttgtaggctgatctgaaggagctgaaagtagatttggacagggcaaggaaag |
2793 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University