View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15856_low_20 (Length: 326)
Name: NF15856_low_20
Description: NF15856
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15856_low_20 |
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| [»] scaffold0037 (1 HSPs) |
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| [»] chr6 (1 HSPs) |
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Alignment Details
Target: scaffold0037 (Bit Score: 151; Significance: 7e-80; HSPs: 1)
Name: scaffold0037
Description:
Target: scaffold0037; HSP #1
Raw Score: 151; E-Value: 7e-80
Query Start/End: Original strand, 66 - 326
Target Start/End: Original strand, 28573 - 28818
Alignment:
| Q |
66 |
tgacagagacattgtattatatatgcagcgttgaggttacaacttcagatttccaacttattcactttaaaaagatggaattatagtcacgagacttctt |
165 |
Q |
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| T |
28573 |
tgacagagacattgtattatatatgcagcgtcgaggttacaacttcagatttccaacttattcactttaaaaagatagaattatagtcactagactactt |
28672 |
T |
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| Q |
166 |
gataagaaaaagaccataaatgaattaatgacaaacaatgggaatacattattcattttatttatgctactacnnnnnnnnngtctttctatttttcctt |
265 |
Q |
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| T |
28673 |
gataagaaaaagaccat--------------caaacaatgagaatacattattcattttatttatgctactac--tttttgtgtctttctatttttcctt |
28756 |
T |
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| Q |
266 |
tcagaatagctgcaaaattaagacatgtgatggaaagtgaacaatatagc-ggggatgaata |
326 |
Q |
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| T |
28757 |
tcagaatagctgcaaaattaagacatgtgatggaaagtgaacaatattgcaggggatgaata |
28818 |
T |
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Target: chr6 (Bit Score: 105; Significance: 2e-52; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 15 - 326
Target Start/End: Original strand, 10425312 - 10425620
Alignment:
| Q |
15 |
atgaataatattgtacataaagccgaaaagaacattgtcgccgtgaaga----gttgacagagacattgtattatatatgcagcgttgaggttacaactt |
110 |
Q |
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| T |
10425312 |
atgaataatattgtacataaagccgaaaagaacgttgtcgccgtgaagattcagttgacagaaacattgtattatacttgtaagattgggg--------- |
10425402 |
T |
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| Q |
111 |
cagatttccaacttattcactttaaaaagatggaattatagtcacgagacttcttgataagaaaaagacca---taa----atgaattaatgacaaacaa |
203 |
Q |
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| T |
10425403 |
--ggttttccacttattcaccttaaaaagatt-aattataatcactaaactgcatgataagaaagggaccaacataacataatgaattaatgacaaacaa |
10425499 |
T |
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| Q |
204 |
tgggaatacattattcattttatttatgctactacnnnnnnnnngtctttctatttttcctttcagaatagctgcaaaattaagacatgtgatggaaagt |
303 |
Q |
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| T |
10425500 |
tgagaatacattattcattttatttatgctactacttttttt--gtctttctatttttcctttgagaatagctgcaaaattaagacatgtgatggaaagt |
10425597 |
T |
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| Q |
304 |
gaacaatatagcggggatgaata |
326 |
Q |
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| T |
10425598 |
gaacaatatagcggggatgaata |
10425620 |
T |
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