View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15856_low_26 (Length: 266)
Name: NF15856_low_26
Description: NF15856
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15856_low_26 |
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Alignment Details
Target: chr3 (Bit Score: 221; Significance: 1e-122; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 221; E-Value: 1e-122
Query Start/End: Original strand, 15 - 247
Target Start/End: Original strand, 9586738 - 9586970
Alignment:
| Q |
15 |
ttaaaatttaaaacgtaatgcacgacgagagaacaaacaactcaaaccaacaaacaattgaaaataaccgaaatttttcaacttaaagattccatcaacc |
114 |
Q |
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| T |
9586738 |
ttaaaatttaaaaagtaatgtacgacgagagaacaaacaactcaaaccaacaaacaattgaaaataaccgaaatttttcaacttaaagattccatcaacc |
9586837 |
T |
|
| Q |
115 |
attacatccaacaatacatgcataaaataaataacataaggaaaaattaatcatatatattttgaagttgaatctcaaacacaagtgacataacatagca |
214 |
Q |
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| T |
9586838 |
attacatccaacaatacatgcataaaataaataacataaggaaaaattaatcatatatattttgaagttgaatctcaaacacaagtgacataacatagca |
9586937 |
T |
|
| Q |
215 |
tcaacaacttgacatcaagaacaaggtgatatc |
247 |
Q |
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| T |
9586938 |
tcaacaacttgacatcaagaataaggtgatatc |
9586970 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 120 - 247
Target Start/End: Original strand, 783484 - 783611
Alignment:
| Q |
120 |
atccaacaatacatgcataaaataaataacataaggaaaaattaatcatatatattttgaagttgaatctcaaacacaagtgacataacatagcatcaac |
219 |
Q |
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| T |
783484 |
atccaacaatacatacataaaataaacaacataaacagaaattaatcatatatagtttgcagttgaaccgcatgcacaagtgacatagcatagcatcaac |
783583 |
T |
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| Q |
220 |
aacttgacatcaagaacaaggtgatatc |
247 |
Q |
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| T |
783584 |
atcttgacattaagaacaaggtgatatc |
783611 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 123 - 247
Target Start/End: Complemental strand, 1438371 - 1438248
Alignment:
| Q |
123 |
caacaatacatgcataaaataaataacataaggaaaaattaatcatatatattttgaagttgaatctcaaacacaagtgacataacatagcatcaacaac |
222 |
Q |
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| T |
1438371 |
caacaatacatgca-aaaataaataacataaacataaattaaccatatttattttgcagttgaatctcatgctcaagtgatacagcatagcatcaacatc |
1438273 |
T |
|
| Q |
223 |
ttgacatcaagaacaaggtgatatc |
247 |
Q |
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||||||| || |||||||||||||| |
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| T |
1438272 |
ttgacattaaaaacaaggtgatatc |
1438248 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 49 - 82
Target Start/End: Original strand, 37752585 - 37752618
Alignment:
| Q |
49 |
aaacaactcaaaccaacaaacaattgaaaataac |
82 |
Q |
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| T |
37752585 |
aaacaactcaaaccaacaaataattgaaaataac |
37752618 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 200 - 245
Target Start/End: Original strand, 37757480 - 37757525
Alignment:
| Q |
200 |
tgacataacatagcatcaacaacttgacatcaagaacaaggtgata |
245 |
Q |
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| T |
37757480 |
tgacatgacatagcatctacaccttgacattaagaacaaggtgata |
37757525 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.00000009; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 138 - 247
Target Start/End: Complemental strand, 33038564 - 33038455
Alignment:
| Q |
138 |
aaaataaataacataaggaaaaattaatcatatatattttgaagttgaatctcaaacacaagtgacataacatagcatcaacaacttgacatcaagaaca |
237 |
Q |
| |
|
|||| |||||| |||| |||||| || ||||||| | ||| |||| ||||||| ||||||||||| ||||||||| ||| | | |||| ||||||| |
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| T |
33038564 |
aaaagaaataaaataaacaaaaataaaccatatatttgttgcagtttaatctcatgttcaagtgacatatcatagcatctacatcctaacattaagaaca |
33038465 |
T |
|
| Q |
238 |
aggtgatatc |
247 |
Q |
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|||||||||| |
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|
| T |
33038464 |
aggtgatatc |
33038455 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 138 - 246
Target Start/End: Complemental strand, 33020683 - 33020575
Alignment:
| Q |
138 |
aaaataaataacataaggaaaaattaatcatatatattttgaagttgaatctcaaacacaagtgacataacatagcatcaacaacttgacatcaagaaca |
237 |
Q |
| |
|
|||| ||||||||||| |||||| || ||||||| | ||| ||||||||| || ||||||||||| |||| |||| ||| | | |||| ||||||| |
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| T |
33020683 |
aaaagaaataacataaacaaaaataaaacatatatttgttgcagttgaatcccaggttcaagtgacatatcataccatctacatcctaacattaagaaca |
33020584 |
T |
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| Q |
238 |
aggtgatat |
246 |
Q |
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||||||||| |
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|
| T |
33020583 |
aggtgatat |
33020575 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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