View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15856_low_27 (Length: 263)

Name: NF15856_low_27
Description: NF15856
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15856_low_27
NF15856_low_27
[»] chr6 (37 HSPs)
chr6 (17-248)||(32299193-32299424)
chr6 (128-232)||(32313338-32313442)
chr6 (120-198)||(30866157-30866235)
chr6 (109-179)||(7265595-7265665)
chr6 (109-158)||(9617442-9617491)
chr6 (126-178)||(43704-43756)
chr6 (109-157)||(9629392-9629440)
chr6 (109-224)||(426516-426631)
chr6 (126-180)||(19602200-19602254)
chr6 (121-179)||(31579239-31579297)
chr6 (109-222)||(7086739-7086852)
chr6 (109-154)||(7377991-7378036)
chr6 (133-222)||(8805598-8805687)
chr6 (109-158)||(9025496-9025545)
chr6 (133-198)||(34447384-34447449)
chr6 (126-222)||(1681702-1681798)
chr6 (117-161)||(2140491-2140535)
chr6 (120-160)||(13815448-13815488)
chr6 (107-159)||(15443702-15443754)
chr6 (133-221)||(21395334-21395421)
chr6 (115-158)||(5462694-5462737)
chr6 (120-171)||(7569181-7569232)
chr6 (108-179)||(9658866-9658937)
chr6 (133-220)||(17168489-17168576)
chr6 (127-178)||(33135233-33135284)
chr6 (109-223)||(9027121-9027235)
chr6 (131-221)||(10339150-10339240)
chr6 (109-159)||(11784218-11784268)
chr6 (120-158)||(19040360-19040398)
chr6 (109-175)||(33001291-33001357)
chr6 (109-222)||(7938060-7938173)
chr6 (109-222)||(9107372-9107485)
chr6 (109-158)||(20371112-20371161)
chr6 (112-157)||(26314639-26314684)
chr6 (126-159)||(29049892-29049925)
chr6 (109-221)||(16766642-16766754)
chr6 (120-180)||(26562675-26562735)
[»] chr4 (34 HSPs)
chr4 (109-224)||(33950078-33950193)
chr4 (120-224)||(903864-903968)
chr4 (120-198)||(19230322-19230400)
chr4 (109-158)||(8423720-8423769)
chr4 (120-224)||(36635266-36635370)
chr4 (126-185)||(12077809-12077868)
chr4 (101-160)||(43299965-43300024)
chr4 (101-160)||(43300622-43300681)
chr4 (128-186)||(8820388-8820446)
chr4 (132-222)||(19482612-19482702)
chr4 (120-222)||(24343451-24343553)
chr4 (128-181)||(43188597-43188650)
chr4 (120-157)||(46715487-46715524)
chr4 (126-162)||(5654610-5654646)
chr4 (126-158)||(24613720-24613752)
chr4 (121-156)||(2234260-2234295)
chr4 (126-161)||(10546153-10546188)
chr4 (169-223)||(4157101-4157155)
chr4 (120-158)||(7214535-7214573)
chr4 (126-160)||(18513260-18513294)
chr4 (128-198)||(20521870-20521940)
chr4 (126-180)||(20743297-20743351)
chr4 (120-158)||(22440613-22440651)
chr4 (105-171)||(29205439-29205505)
chr4 (126-175)||(5176975-5177024)
chr4 (109-158)||(5775360-5775409)
chr4 (129-158)||(34200293-34200322)
chr4 (109-158)||(54580025-54580074)
chr4 (131-219)||(847898-847986)
chr4 (131-171)||(9996835-9996875)
chr4 (120-220)||(14126124-14126224)
chr4 (126-158)||(14465094-14465126)
chr4 (126-222)||(34515893-34515989)
chr4 (120-179)||(35723397-35723457)
[»] chr1 (41 HSPs)
chr1 (109-222)||(2896123-2896236)
chr1 (120-179)||(6427337-6427396)
chr1 (109-219)||(9709767-9709877)
chr1 (105-158)||(1864878-1864931)
chr1 (119-222)||(34298380-34298483)
chr1 (124-179)||(40285671-40285726)
chr1 (120-222)||(398778-398880)
chr1 (109-179)||(36878448-36878518)
chr1 (131-188)||(9449032-9449089)
chr1 (121-218)||(25452162-25452259)
chr1 (109-222)||(38503264-38503377)
chr1 (109-222)||(47989442-47989554)
chr1 (120-160)||(17425106-17425146)
chr1 (131-179)||(36905984-36906032)
chr1 (120-160)||(40747786-40747826)
chr1 (126-174)||(42325552-42325600)
chr1 (126-185)||(27471585-27471644)
chr1 (109-156)||(44482240-44482287)
chr1 (121-159)||(2288181-2288219)
chr1 (120-158)||(7918224-7918262)
chr1 (126-160)||(11571591-11571625)
chr1 (120-158)||(40181879-40181917)
chr1 (109-167)||(41017406-41017464)
chr1 (105-222)||(609456-609573)
chr1 (129-158)||(1262892-1262921)
chr1 (109-158)||(1486711-1486760)
chr1 (126-159)||(3921674-3921707)
chr1 (76-160)||(11412736-11412821)
chr1 (120-185)||(19562634-19562699)
chr1 (109-158)||(38078663-38078712)
chr1 (133-222)||(41877496-41877585)
chr1 (111-152)||(46914043-46914084)
chr1 (128-160)||(351105-351137)
chr1 (106-174)||(10233245-10233313)
chr1 (126-158)||(12443479-12443511)
chr1 (131-179)||(16812530-16812578)
chr1 (120-156)||(19324572-19324608)
chr1 (120-156)||(25098568-25098604)
chr1 (120-156)||(25361896-25361932)
chr1 (126-158)||(31015051-31015083)
chr1 (124-160)||(48785281-48785317)
[»] chr8 (28 HSPs)
chr8 (120-222)||(44067460-44067562)
chr8 (109-159)||(12985399-12985449)
chr8 (109-158)||(14134707-14134756)
chr8 (110-158)||(31236580-31236628)
chr8 (107-221)||(11803204-11803318)
chr8 (105-158)||(7658471-7658524)
chr8 (109-158)||(12606831-12606880)
chr8 (129-222)||(22651920-22652013)
chr8 (109-221)||(926790-926902)
chr8 (126-162)||(3508056-3508092)
chr8 (126-158)||(29447129-29447161)
chr8 (131-222)||(29510328-29510419)
chr8 (120-159)||(34201059-34201098)
chr8 (120-158)||(3025559-3025597)
chr8 (109-179)||(13844598-13844668)
chr8 (109-179)||(33405386-33405456)
chr8 (120-158)||(34897093-34897131)
chr8 (109-158)||(4786340-4786389)
chr8 (109-158)||(11927088-11927137)
chr8 (126-159)||(14227229-14227262)
chr8 (109-158)||(20679397-20679446)
chr8 (133-222)||(22197768-22197857)
chr8 (105-158)||(26434188-26434241)
chr8 (126-159)||(37225762-37225795)
chr8 (105-158)||(38278173-38278226)
chr8 (126-158)||(29198498-29198530)
chr8 (124-160)||(34739078-34739114)
chr8 (109-157)||(40332200-40332248)
[»] chr2 (26 HSPs)
chr2 (107-177)||(18420434-18420504)
chr2 (105-222)||(31283992-31284110)
chr2 (121-185)||(21782832-21782896)
chr2 (120-185)||(35449494-35449559)
chr2 (120-220)||(21616708-21616808)
chr2 (110-222)||(23717977-23718082)
chr2 (110-222)||(24105649-24105754)
chr2 (109-183)||(37497103-37497177)
chr2 (121-162)||(4332930-4332971)
chr2 (121-221)||(18276466-18276566)
chr2 (111-179)||(30527599-30527667)
chr2 (109-160)||(31026701-31026752)
chr2 (108-159)||(44605140-44605191)
chr2 (126-160)||(18570978-18571012)
chr2 (126-160)||(30563415-30563449)
chr2 (108-158)||(39026826-39026876)
chr2 (106-176)||(39279665-39279735)
chr2 (126-160)||(40681988-40682022)
chr2 (126-179)||(896198-896251)
chr2 (121-158)||(2331802-2331839)
chr2 (109-158)||(5367200-5367249)
chr2 (126-159)||(19613632-19613665)
chr2 (126-179)||(27084249-27084302)
chr2 (121-222)||(28412294-28412395)
chr2 (109-158)||(44860328-44860377)
chr2 (107-179)||(31808064-31808136)
[»] chr7 (28 HSPs)
chr7 (109-177)||(6326686-6326754)
chr7 (109-185)||(20549772-20549848)
chr7 (126-224)||(25481844-25481942)
chr7 (47-158)||(21880160-21880271)
chr7 (126-222)||(30730981-30731077)
chr7 (131-179)||(45056925-45056973)
chr7 (120-171)||(12278830-12278881)
chr7 (101-160)||(44020981-44021040)
chr7 (126-161)||(44172909-44172944)
chr7 (110-160)||(3520345-3520395)
chr7 (120-162)||(16341500-16341542)
chr7 (120-222)||(26329395-26329497)
chr7 (126-160)||(38134425-38134459)
chr7 (109-198)||(598176-598265)
chr7 (121-158)||(2424622-2424659)
chr7 (109-158)||(7438714-7438763)
chr7 (121-158)||(11700811-11700848)
chr7 (109-158)||(19206058-19206107)
chr7 (109-158)||(19992009-19992058)
chr7 (109-158)||(24146824-24146873)
chr7 (121-158)||(29787383-29787420)
chr7 (126-179)||(32308107-32308160)
chr7 (107-159)||(15902829-15902881)
chr7 (126-162)||(21247755-21247791)
chr7 (109-153)||(22602712-22602756)
chr7 (109-185)||(25791634-25791709)
chr7 (126-158)||(35861972-35862004)
chr7 (126-162)||(41360914-41360950)
[»] chr5 (29 HSPs)
chr5 (111-158)||(30098334-30098381)
chr5 (109-158)||(22423814-22423863)
chr5 (126-159)||(9449476-9449509)
chr5 (105-158)||(23012406-23012459)
chr5 (126-222)||(24906320-24906416)
chr5 (109-158)||(28588676-28588725)
chr5 (126-226)||(39342396-39342494)
chr5 (76-219)||(30502357-30502500)
chr5 (76-219)||(30542700-30542843)
chr5 (122-162)||(32428941-32428981)
chr5 (120-224)||(6471902-6471998)
chr5 (126-160)||(11596474-11596508)
chr5 (105-179)||(17123035-17123109)
chr5 (108-222)||(17177024-17177138)
chr5 (109-159)||(17925174-17925224)
chr5 (126-160)||(18607116-18607150)
chr5 (126-160)||(28296334-28296368)
chr5 (109-158)||(3966511-3966560)
chr5 (121-222)||(6770487-6770588)
chr5 (109-210)||(16203797-16203898)
chr5 (133-222)||(19579645-19579734)
chr5 (126-179)||(31084310-31084363)
chr5 (107-160)||(38749563-38749616)
chr5 (126-175)||(43208293-43208342)
chr5 (120-160)||(5467991-5468031)
chr5 (120-180)||(7997179-7997239)
chr5 (110-158)||(17593725-17593773)
chr5 (128-160)||(19737503-19737535)
chr5 (120-160)||(32630748-32630788)
[»] chr3 (26 HSPs)
chr3 (109-224)||(25093444-25093559)
chr3 (129-207)||(13807128-13807206)
chr3 (120-222)||(24205054-24205156)
chr3 (74-160)||(15304569-15304656)
chr3 (120-158)||(9624649-9624687)
chr3 (120-197)||(25652044-25652121)
chr3 (122-198)||(11610489-11610565)
chr3 (126-221)||(4469795-4469890)
chr3 (131-218)||(11658764-11658850)
chr3 (120-198)||(4466613-4466691)
chr3 (109-179)||(39002019-39002089)
chr3 (126-160)||(52369781-52369815)
chr3 (109-158)||(7614417-7614466)
chr3 (109-158)||(7928458-7928507)
chr3 (109-158)||(8383265-8383314)
chr3 (121-158)||(11251986-11252023)
chr3 (134-199)||(12674528-12674593)
chr3 (126-155)||(12704056-12704085)
chr3 (109-162)||(20691323-20691376)
chr3 (105-158)||(24633399-24633452)
chr3 (109-158)||(38731226-38731275)
chr3 (126-159)||(46191364-46191397)
chr3 (109-158)||(47362570-47362619)
chr3 (126-158)||(5339116-5339148)
chr3 (128-160)||(9210846-9210878)
chr3 (107-179)||(17005619-17005691)
[»] scaffold0007 (1 HSPs)
scaffold0007 (120-222)||(225281-225383)
[»] scaffold0022 (2 HSPs)
scaffold0022 (113-185)||(90824-90896)
scaffold0022 (120-160)||(99899-99939)
[»] scaffold0085 (1 HSPs)
scaffold0085 (120-158)||(26401-26439)
[»] scaffold0027 (1 HSPs)
scaffold0027 (109-222)||(46626-46739)
[»] scaffold0020 (1 HSPs)
scaffold0020 (109-173)||(135314-135378)
[»] scaffold0110 (1 HSPs)
scaffold0110 (107-158)||(28858-28909)
[»] scaffold0044 (1 HSPs)
scaffold0044 (110-157)||(53189-53236)
[»] scaffold0571 (1 HSPs)
scaffold0571 (128-162)||(7694-7728)
[»] scaffold0154 (1 HSPs)
scaffold0154 (173-223)||(13394-13444)
[»] scaffold0036 (1 HSPs)
scaffold0036 (109-158)||(9749-9798)


Alignment Details
Target: chr6 (Bit Score: 196; Significance: 1e-107; HSPs: 37)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 17 - 248
Target Start/End: Complemental strand, 32299424 - 32299193
Alignment:
Q  17 acttgtttcgtcgaaaatgcctgtggtatactatgaagcacggacatttctctaaataagcatgtcctagtgtaggacatggtcggtttccaacaccgac 116  Q
    |||||||||||||||||||||||||||||| |||||||||| ||||||||||| |||||||||||| |||||||||||||||||||||| ||||||||||    
T  32299424 acttgtttcgtcgaaaatgcctgtggtatagtatgaagcacagacatttctctgaataagcatgtcttagtgtaggacatggtcggttttcaacaccgac 32299325  T
Q  117 atgtataactacattgaattatgtgattttctcaaattattatcagggttggtgtgtcagtgtttgtgttatgtctggtgtctctgtctgtatccgtgct 216  Q
    | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||    
T  32299324 acgtataactacattgaattatgtgattttctcaaattattatcagggttggtgtgtcagtatttgtgttatgtctggtgtctgtgtctgtatccgtgct 32299225  T
Q  217 tcatagatggcatattttctttgataattcat 248  Q
    |||||||||||||||| |||||||||||||||    
T  32299224 tcatagatggcatattgtctttgataattcat 32299193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 128 - 232
Target Start/End: Complemental strand, 32313442 - 32313338
Alignment:
Q  128 cattgaattatgtgattttctcaaattattatcagggttggtgtgtcagtgtttgtgttatgtctggtgtctctgtctgtatccgtgcttcatagatggc 227  Q
    |||||||| |||| |||||||||| |||||||  | || || ||||||||| |||| | ||||||||||| | ||||||||| | |||||||||||||||    
T  32313442 cattgaatcatgttattttctcaacttattattggtgtcggcgtgtcagtgcttgtatcatgtctggtgtttatgtctgtattcatgcttcatagatggc 32313343  T
Q  228 atatt 232  Q
    |||||    
T  32313342 atatt 32313338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 120 - 198
Target Start/End: Original strand, 30866157 - 30866235
Alignment:
Q  120 tataactacattgaattatgtgattttctcaaattattatcagggttggtgtgtcagtgtttgtgttatgtctggtgtc 198  Q
    ||||| ||||||||||||||||||||||||||||||||| | | ||||||||||| ||||  |||| ||||| ||||||    
T  30866157 tataattacattgaattatgtgattttctcaaattattagcggtgttggtgtgtcggtgtcagtgtcatgtccggtgtc 30866235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 109 - 179
Target Start/End: Original strand, 7265595 - 7265665
Alignment:
Q  109 acaccgacatgtataactacattgaattatgtgattttctcaaattattatcagggttggtgtgtcagtgt 179  Q
    |||||||||  ||||| |||| |||||||||||||||||||||||||||| | | ||||| ||||||||||    
T  7265595 acaccgacacatataattacactgaattatgtgattttctcaaattattagcggtgttggcgtgtcagtgt 7265665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 109 - 158
Target Start/End: Complemental strand, 9617491 - 9617442
Alignment:
Q  109 acaccgacatgtataactacattgaattatgtgattttctcaaattatta 158  Q
    |||||||||  ||||| |||||||||||||||||||||||||||||||||    
T  9617491 acaccgacacatataattacattgaattatgtgattttctcaaattatta 9617442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 126 - 178
Target Start/End: Complemental strand, 43756 - 43704
Alignment:
Q  126 tacattgaattatgtgattttctcaaattattatcagggttggtgtgtcagtg 178  Q
    |||||||||||| |||||||||||||||||||| ||| |||||||||| ||||    
T  43756 tacattgaattacgtgattttctcaaattattagcagtgttggtgtgttagtg 43704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 109 - 157
Target Start/End: Complemental strand, 9629440 - 9629392
Alignment:
Q  109 acaccgacatgtataactacattgaattatgtgattttctcaaattatt 157  Q
    |||||||||  ||||| ||||||||||||||||||||||||||||||||    
T  9629440 acaccgacacatataattacattgaattatgtgattttctcaaattatt 9629392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 109 - 224
Target Start/End: Original strand, 426516 - 426631
Alignment:
Q  109 acaccgacatgtataactacattgaattatgtgattttctcaaattattatcagggttggtgtgtcagtgtttgtgttatgtctggtgtctctgtctgta 208  Q
    |||||||||  | ||| |||||| |||||||||||||| ||||||||||| | | || || ||||||||||  ||||  |||| ||| ||  ||||||||    
T  426516 acaccgacacttgtaattacatttaattatgtgattttttcaaattattaactgtgtcggcgtgtcagtgtccgtgtcgtgtccggtatccgtgtctgta 426615  T
Q  209 tccgtgcttcatagat 224  Q
    ||| ||||||||||||    
T  426616 tccatgcttcatagat 426631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 126 - 180
Target Start/End: Original strand, 19602200 - 19602254
Alignment:
Q  126 tacattgaattatgtgattttctcaaattattatcagggttggtgtgtcagtgtt 180  Q
    |||| |||||||| | ||||||||||||||||||||| ||||||||||| |||||    
T  19602200 tacactgaattatatcattttctcaaattattatcagtgttggtgtgtccgtgtt 19602254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 121 - 179
Target Start/End: Original strand, 31579239 - 31579297
Alignment:
Q  121 ataactacattgaattatgtgattttctcaaattattatcagggttggtgtgtcagtgt 179  Q
    |||| |||| |||||||||||||||||||||||||||| | | ||||||||| ||||||    
T  31579239 ataattacactgaattatgtgattttctcaaattattaacggtgttggtgtggcagtgt 31579297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 109 - 222
Target Start/End: Complemental strand, 7086852 - 7086739
Alignment:
Q  109 acaccgacatgtataactacattgaattatgtgattttctcaaattattatcagggttggtgtgtcagtgtttgtgttatgtctggtgtctctgtctgta 208  Q
    |||||||||  ||||| |||| | |||||||||||||||||||||||||| ||| |  |  ||||| |||| |||||  |||||||| | | ||| ||||    
T  7086852 acaccgacacatataattacactaaattatgtgattttctcaaattattagcagtgccgacgtgtcggtgtctgtgtcgtgtctggtatttgtgtttgta 7086753  T
Q  209 tccgtgcttcatag 222  Q
    ||| ||||||||||    
T  7086752 tccatgcttcatag 7086739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 109 - 154
Target Start/End: Complemental strand, 7378036 - 7377991
Alignment:
Q  109 acaccgacatgtataactacattgaattatgtgattttctcaaatt 154  Q
    |||||||||  ||||| |||||||||||||||||||||||||||||    
T  7378036 acaccgacacatataattacattgaattatgtgattttctcaaatt 7377991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 133 - 222
Target Start/End: Original strand, 8805598 - 8805687
Alignment:
Q  133 aattatgtgattttctcaaattattatcagggttggtgtgtcagtgtttgtgttatgtctggtgtctctgtctgtatccgtgcttcatag 222  Q
    |||||||||||||||||||||||||| ||| |  |  ||||| |||| |||||  |||||||||| | ||| ||||||| ||||||||||    
T  8805598 aattatgtgattttctcaaattattagcagtgccgacgtgtcggtgtctgtgtcgtgtctggtgtttgtgtatgtatccatgcttcatag 8805687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 109 - 158
Target Start/End: Original strand, 9025496 - 9025545
Alignment:
Q  109 acaccgacatgtataactacattgaattatgtgattttctcaaattatta 158  Q
    |||||||||  ||||| |||| ||||||||||||||||||||||||||||    
T  9025496 acaccgacacatataattacactgaattatgtgattttctcaaattatta 9025545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 133 - 198
Target Start/End: Original strand, 34447384 - 34447449
Alignment:
Q  133 aattatgtgattttctcaaattattatcagggttggtgtgtcagtgtttgtgttatgtctggtgtc 198  Q
    |||||| ||||||| ||||||||||| | | ||||| |||||| ||| ||||||||||||||||||    
T  34447384 aattatatgattttatcaaattattaacggtgttggcgtgtcattgtctgtgttatgtctggtgtc 34447449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 126 - 222
Target Start/End: Complemental strand, 1681798 - 1681702
Alignment:
Q  126 tacattgaattatgtgattttctcaaattattatcagggttggtgtgtcagtgtttgtgttatgtctggtgtctctgtctgtatccgtgcttcatag 222  Q
    |||| ||||||| |||||||| |||||||||||   | || || |||| ||||| |||||  |||  ||||||| ||||||||||||||||||||||    
T  1681798 tacactgaattacgtgattttttcaaattattagttgtgtcggcgtgttagtgtatgtgtcgtgttcggtgtctgtgtctgtatccgtgcttcatag 1681702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 117 - 161
Target Start/End: Original strand, 2140491 - 2140535
Alignment:
Q  117 atgtataactacattgaattatgtgattttctcaaattattatca 161  Q
    |||||||  ||||||||||||||| ||||||||||||||||||||    
T  2140491 atgtatagttacattgaattatgtcattttctcaaattattatca 2140535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 120 - 160
Target Start/End: Complemental strand, 13815488 - 13815448
Alignment:
Q  120 tataactacattgaattatgtgattttctcaaattattatc 160  Q
    ||||||| ||||||||||||||||||||||||| |||||||    
T  13815488 tataacttcattgaattatgtgattttctcaaaatattatc 13815448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 107 - 159
Target Start/End: Complemental strand, 15443754 - 15443702
Alignment:
Q  107 caacaccgacatgtataactacattgaattatgtgattttctcaaattattat 159  Q
    ||||||| |||| ||||| || |||||||||||| ||||||||||||||||||    
T  15443754 caacaccaacatatataattatattgaattatgttattttctcaaattattat 15443702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 133 - 221
Target Start/End: Original strand, 21395334 - 21395421
Alignment:
Q  133 aattatgtgattttctcaaattattatcagggttggtgtgtcagtgtttgtgttatgtctggtgtctctgtctgtatccgtgcttcata 221  Q
    |||||||| ||||||||||||||||| | | ||||| ||||| ||||   ||| || || ||||||| |||||||||||||||||||||    
T  21395334 aattatgt-attttctcaaattattagcggtgttggcgtgtcggtgtccatgtcatatccggtgtctgtgtctgtatccgtgcttcata 21395421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 115 - 158
Target Start/End: Complemental strand, 5462737 - 5462694
Alignment:
Q  115 acatgtataactacattgaattatgtgattttctcaaattatta 158  Q
    |||| ||||| |||| ||||||||||||||||||||||||||||    
T  5462737 acatatataattacaatgaattatgtgattttctcaaattatta 5462694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 120 - 171
Target Start/End: Original strand, 7569181 - 7569232
Alignment:
Q  120 tataactacattgaattatgtgattttctcaaattattatcagggttggtgt 171  Q
    ||||| |||| |||||||||| ||||||||||||||||||| | ||||||||    
T  7569181 tataattacactgaattatgtaattttctcaaattattatctgtgttggtgt 7569232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 108 - 179
Target Start/End: Complemental strand, 9658937 - 9658866
Alignment:
Q  108 aacaccgacatgtataactacattgaattatgtgattttctcaaattattatcagggttggtgtgtcagtgt 179  Q
    ||||||||||  ||||| |||| |||||||||||||||||| ||||||||| | | || || ||||||||||    
T  9658937 aacaccgacaaatataattacactgaattatgtgattttcttaaattattagcggtgtcggcgtgtcagtgt 9658866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 133 - 220
Target Start/End: Original strand, 17168489 - 17168576
Alignment:
Q  133 aattatgtgattttctcaaattattatcagggttggtgtgtcagtgtttgtgttatgtctggtgtctctgtctgtatccgtgcttcat 220  Q
    |||||| | ||||||||||||||||||||| ||||| |||||||||| | ||| ||||| | | ||  ||| ||||| ||||||||||    
T  17168489 aattatatcattttctcaaattattatcagtgttggcgtgtcagtgtctatgtcatgtccgatttccgtgtttgtattcgtgcttcat 17168576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 127 - 178
Target Start/End: Complemental strand, 33135284 - 33135233
Alignment:
Q  127 acattgaattatgtgattttctcaaattattatcagggttggtgtgtcagtg 178  Q
    |||||||||||||| |||||| ||||||||||||||||| |  |||||||||    
T  33135284 acattgaattatgttattttcacaaattattatcagggtcgccgtgtcagtg 33135233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #26
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 109 - 223
Target Start/End: Complemental strand, 9027235 - 9027121
Alignment:
Q  109 acaccgacatgtataactacattgaattatgtgattttctcaaattattatcagggttggtgtgtcagtgtttgtgttatgtctggtgtctctgtctgta 208  Q
    |||||||||  ||||| ||||  ||||||||||||| ||||||||||||| | | || || ||||||||||  ||||  |||| || |||  |||| |||    
T  9027235 acaccgacacatataattacacggaattatgtgattatctcaaattattagcggtgtcggcgtgtcagtgtccgtgtcgtgtccggagtccgtgtccgta 9027136  T
Q  209 tccgtgcttcataga 223  Q
    || ||||||||||||    
T  9027135 tcggtgcttcataga 9027121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #27
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 131 - 221
Target Start/End: Original strand, 10339150 - 10339240
Alignment:
Q  131 tgaattatgtgattttctcaaattattatcagggttggtgtgtcagtgtttgtgttatgtctggtgtctctgtctgtatccgtgcttcata 221  Q
    ||||||||||||||||||||||||| |  | | || || |||||||||||  |||  ||||  |||||  |||||||||||||||||||||    
T  10339150 tgaattatgtgattttctcaaattaatcgcggtgtcggcgtgtcagtgttcatgtcgtgtcctgtgtccatgtctgtatccgtgcttcata 10339240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #28
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 109 - 159
Target Start/End: Original strand, 11784218 - 11784268
Alignment:
Q  109 acaccgacatgtataactacattgaattatgtgattttctcaaattattat 159  Q
    |||||||||| ||||| |||| ||| | |||||||||||||||||||||||    
T  11784218 acaccgacatatataattacactgattcatgtgattttctcaaattattat 11784268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #29
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 120 - 158
Target Start/End: Complemental strand, 19040398 - 19040360
Alignment:
Q  120 tataactacattgaattatgtgattttctcaaattatta 158  Q
    ||||| |||| ||||||||||||||||||||||||||||    
T  19040398 tataattacactgaattatgtgattttctcaaattatta 19040360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #30
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 109 - 175
Target Start/End: Original strand, 33001291 - 33001357
Alignment:
Q  109 acaccgacatgtataactacattgaattatgtgattttctcaaattattatcagggttggtgtgtca 175  Q
    |||||||||  ||||| |||||| |||||||||||||| ||||||||||| ||| || || ||||||    
T  33001291 acaccgacacatataattacatttaattatgtgattttttcaaattattagcagtgtcggcgtgtca 33001357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #31
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 109 - 222
Target Start/End: Complemental strand, 7938173 - 7938060
Alignment:
Q  109 acaccgacatgtataactacattgaattatgtgattttctcaaattattatcagggttggtgtgtcagtgtttgtgttatgtctggtgtctctgtctgta 208  Q
    |||||||||  ||||| |||| | |||||| ||||||| ||||||||||| | | || || ||||||||||   |||  |||| ||||||  |||| |||    
T  7938173 acaccgacacttataattacactaaattatatgattttttcaaattattagctgtgtcggcgtgtcagtgtccatgtcgtgtccggtgtccgtgtccgta 7938074  T
Q  209 tccgtgcttcatag 222  Q
    ||||||||||||||    
T  7938073 tccgtgcttcatag 7938060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #32
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 109 - 222
Target Start/End: Original strand, 9107372 - 9107485
Alignment:
Q  109 acaccgacatgtataactacattgaattatgtgattttctcaaattattatcagggttggtgtgtcagtgtttgtgttatgtctggtgtctctgtctgta 208  Q
    |||||||||  | ||| |||| |||||| ||||||||| ||||||||||| | | || || |||| |||||  ||||  |||| ||||||  |||| |||    
T  9107372 acaccgacacttgtaattacactgaattttgtgattttttcaaattattagctgtgtcggcgtgttagtgtccgtgtcgtgtccggtgtccgtgtcagta 9107471  T
Q  209 tccgtgcttcatag 222  Q
    ||||||||||||||    
T  9107472 tccgtgcttcatag 9107485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #33
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 109 - 158
Target Start/End: Original strand, 20371112 - 20371161
Alignment:
Q  109 acaccgacatgtataactacattgaattatgtgattttctcaaattatta 158  Q
    |||||||||  |||||  ||||||| ||||||||||||||||||||||||    
T  20371112 acaccgacacatataatcacattgagttatgtgattttctcaaattatta 20371161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #34
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 112 - 157
Target Start/End: Original strand, 26314639 - 26314684
Alignment:
Q  112 ccgacatgtataactacattgaattatgtgattttctcaaattatt 157  Q
    ||||||| ||||| ||||||||||||| ||||||| ||||||||||    
T  26314639 ccgacatatataattacattgaattatatgattttttcaaattatt 26314684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #35
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 126 - 159
Target Start/End: Complemental strand, 29049925 - 29049892
Alignment:
Q  126 tacattgaattatgtgattttctcaaattattat 159  Q
    ||||||||||||||| ||||||||||||||||||    
T  29049925 tacattgaattatgtaattttctcaaattattat 29049892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #36
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 109 - 221
Target Start/End: Complemental strand, 16766754 - 16766642
Alignment:
Q  109 acaccgacatgtataactacattgaattatgtgattttctcaaattattatcagggttggtgtgtcagtgtttgtgttatgtctggtgtctctgtctgta 208  Q
    |||||||||  | ||| |||| |||||||||||||||| ||||||||||| | | || || ||||||||||   |||  |||| ||||||  |||| |||    
T  16766754 acaccgacacttgtaattacactgaattatgtgattttttcaaattattagctgtgtcggcgtgtcagtgtccatgtcgtgtccggtgtccgtgtccgta 16766655  T
Q  209 tccgtgcttcata 221  Q
    ||| |||||||||    
T  16766654 tccatgcttcata 16766642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #37
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 120 - 180
Target Start/End: Complemental strand, 26562735 - 26562675
Alignment:
Q  120 tataactacattgaattatgtgattttctcaaattattatcagggttggtgtgtcagtgtt 180  Q
    ||||| |||| |||||||||||||||||||||||| ||| ||| || || ||||| |||||    
T  26562735 tataattacactgaattatgtgattttctcaaatttttagcagtgtcggcgtgtccgtgtt 26562675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 52; Significance: 7e-21; HSPs: 34)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 109 - 224
Target Start/End: Complemental strand, 33950193 - 33950078
Alignment:
Q  109 acaccgacatgtataactacattgaattatgtgattttctcaaattattatcagggttggtgtgtcagtgtttgtgttatgtctggtgtctctgtctgta 208  Q
    |||||||||  ||| | |||||| |||||||||||||||||||||||||| | | ||||  ||||||||||| |||||||||||||||||  |||  |||    
T  33950193 acaccgacacatatgattacattaaattatgtgattttctcaaattattagcggcgttgaagtgtcagtgttcgtgttatgtctggtgtccgtgttcgta 33950094  T
Q  209 tccgtgcttcatagat 224  Q
     |||||||||||||||    
T  33950093 cccgtgcttcatagat 33950078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 120 - 224
Target Start/End: Complemental strand, 903968 - 903864
Alignment:
Q  120 tataactacattgaattatgtgattttctcaaattattatcagggttggtgtgtcagtgtttgtgttatgtctggtgtctctgtctgtatccgtgcttca 219  Q
    ||||| |||| |||||||||||||||||||||||||||| | | |  |||||||||||||  || |||||||||| | |  |||| ||||||||||||||    
T  903968 tataattacactgaattatgtgattttctcaaattattaacggtgccggtgtgtcagtgtccgttttatgtctggcgcccgtgtccgtatccgtgcttca 903869  T
Q  220 tagat 224  Q
    |||||    
T  903868 tagat 903864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 120 - 198
Target Start/End: Original strand, 19230322 - 19230400
Alignment:
Q  120 tataactacattgaattatgtgattttctcaaattattatcagggttggtgtgtcagtgtttgtgttatgtctggtgtc 198  Q
    ||||| ||||||||||||||| |||||||||||||||||||   ||   ||||||||||||||| || |||||||||||    
T  19230322 tataattacattgaattatgttattttctcaaattattatctatgtccatgtgtcagtgtttgtattgtgtctggtgtc 19230400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 109 - 158
Target Start/End: Original strand, 8423720 - 8423769
Alignment:
Q  109 acaccgacatgtataactacattgaattatgtgattttctcaaattatta 158  Q
    |||||||||| ||||| |||| ||||||||||||||||||||||||||||    
T  8423720 acaccgacatttataattacactgaattatgtgattttctcaaattatta 8423769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 120 - 224
Target Start/End: Complemental strand, 36635370 - 36635266
Alignment:
Q  120 tataactacattgaattatgtgattttctcaaattattatcagggttggtgtgtcagtgtttgtgttatgtctggtgtctctgtctgtatccgtgcttca 219  Q
    ||||| |||| ||||||||||||||||||||||||||||   | ||||| ||||||||||  | ||  |||| ||||||| ||||  ||||| |||||||    
T  36635370 tataattacactgaattatgtgattttctcaaattattagtggtgttggcgtgtcagtgtccgagtcgtgtccggtgtctgtgtccttatccatgcttca 36635271  T
Q  220 tagat 224  Q
    |||||    
T  36635270 tagat 36635266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 126 - 185
Target Start/End: Complemental strand, 12077868 - 12077809
Alignment:
Q  126 tacattgaattatgtgattttctcaaattattatcagggttggtgtgtcagtgtttgtgt 185  Q
    ||||||||||||||||||||||||||||||||| |||  |||  ||||||||||| ||||    
T  12077868 tacattgaattatgtgattttctcaaattattaacagtattgacgtgtcagtgttcgtgt 12077809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 101 - 160
Target Start/End: Original strand, 43299965 - 43300024
Alignment:
Q  101 ggtttccaacaccgacatgtataactacattgaattatgtgattttctcaaattattatc 160  Q
    |||||||||||||| ||  ||| | ||||||||||||||| |||||||||||||||||||    
T  43299965 ggtttccaacaccggcagatatgattacattgaattatgtaattttctcaaattattatc 43300024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 101 - 160
Target Start/End: Complemental strand, 43300681 - 43300622
Alignment:
Q  101 ggtttccaacaccgacatgtataactacattgaattatgtgattttctcaaattattatc 160  Q
    ||||||||||| |||||  ||| | ||||||||||||||| |||||||||||||||||||    
T  43300681 ggtttccaacagcgacaaatatgattacattgaattatgtaattttctcaaattattatc 43300622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 128 - 186
Target Start/End: Complemental strand, 8820446 - 8820388
Alignment:
Q  128 cattgaattatgtgattttctcaaattattatcagggttggtgtgtcagtgtttgtgtt 186  Q
    ||||||||||||||||||| |||||||||||||   ||||  |||||||||||||||||    
T  8820446 cattgaattatgtgattttatcaaattattatcgatgttgacgtgtcagtgtttgtgtt 8820388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 132 - 222
Target Start/End: Complemental strand, 19482702 - 19482612
Alignment:
Q  132 gaattatgtgattttctcaaattattatcagggttggtgtgtcagtgtttgtgttatgtctggtgtctctgtctgtatccgtgcttcatag 222  Q
    |||||||||||| || |||||||||||   | || || |||||||||| |||||  |||||||||||| |||  |||||||||||||||||    
T  19482702 gaattatgtgatattttcaaattattagttgtgtcggcgtgtcagtgtctgtgtcgtgtctggtgtctgtgttcgtatccgtgcttcatag 19482612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 120 - 222
Target Start/End: Complemental strand, 24343553 - 24343451
Alignment:
Q  120 tataactacattgaattatgtgattttctcaaattattatcagggttggtgtgtcagtgtttgtgttatgtctggtgtctctgtctgtatccgtgcttca 219  Q
    ||||| |||| |||||||||| ||||||||||||||||||| | || || ||||| | ||  ||||  |||| ||||||  ||||||| |||||||||||    
T  24343553 tataattacactgaattatgtaattttctcaaattattatccgtgtcggcgtgtcggcgtccgtgtcgtgtccggtgtccgtgtctgtgtccgtgcttca 24343454  T
Q  220 tag 222  Q
    |||    
T  24343453 tag 24343451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 128 - 181
Target Start/End: Complemental strand, 43188650 - 43188597
Alignment:
Q  128 cattgaattatgtgattttctcaaattattatcagggttggtgtgtcagtgttt 181  Q
    ||||||||||||| ||||||||||||||||||||| ||  ||||||| ||||||    
T  43188650 cattgaattatgtcattttctcaaattattatcagtgtctgtgtgtctgtgttt 43188597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 120 - 157
Target Start/End: Original strand, 46715487 - 46715524
Alignment:
Q  120 tataactacattgaattatgtgattttctcaaattatt 157  Q
    ||||||||||||||||||||||||| ||||||||||||    
T  46715487 tataactacattgaattatgtgattgtctcaaattatt 46715524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 126 - 162
Target Start/End: Original strand, 5654610 - 5654646
Alignment:
Q  126 tacattgaattatgtgattttctcaaattattatcag 162  Q
    ||||||||||||||| |||||||||||||||||||||    
T  5654610 tacattgaattatgtcattttctcaaattattatcag 5654646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 126 - 158
Target Start/End: Original strand, 24613720 - 24613752
Alignment:
Q  126 tacattgaattatgtgattttctcaaattatta 158  Q
    |||||||||||||||||||||||||||||||||    
T  24613720 tacattgaattatgtgattttctcaaattatta 24613752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 121 - 156
Target Start/End: Complemental strand, 2234295 - 2234260
Alignment:
Q  121 ataactacattgaattatgtgattttctcaaattat 156  Q
    |||| |||||||||||||||||||||||||||||||    
T  2234295 ataattacattgaattatgtgattttctcaaattat 2234260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 126 - 161
Target Start/End: Complemental strand, 10546188 - 10546153
Alignment:
Q  126 tacattgaattatgtgattttctcaaattattatca 161  Q
    ||||||||||||||| ||||||||||||||||||||    
T  10546188 tacattgaattatgtcattttctcaaattattatca 10546153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 169 - 223
Target Start/End: Complemental strand, 4157155 - 4157101
Alignment:
Q  169 tgtgtcagtgtttgtgttatgtctggtgtctctgtctgtatccgtgcttcataga 223  Q
    ||||||||||| |||||  |||||||||||  |||| ||||||||||||||||||    
T  4157155 tgtgtcagtgtctgtgtcgtgtctggtgtccgtgtccgtatccgtgcttcataga 4157101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 120 - 158
Target Start/End: Original strand, 7214535 - 7214573
Alignment:
Q  120 tataactacattgaattatgtgattttctcaaattatta 158  Q
    ||||| |||||| ||||||||||||||||||||||||||    
T  7214535 tataattacattaaattatgtgattttctcaaattatta 7214573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 126 - 160
Target Start/End: Original strand, 18513260 - 18513294
Alignment:
Q  126 tacattgaattatgtgattttctcaaattattatc 160  Q
    ||||||||||||||| |||||||||||||||||||    
T  18513260 tacattgaattatgtcattttctcaaattattatc 18513294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 128 - 198
Target Start/End: Original strand, 20521870 - 20521940
Alignment:
Q  128 cattgaattatgtgattttctcaaattattatcagggttggtgtgtcagtgtttgtgttatgtctggtgtc 198  Q
    ||||||||||||||||||| ||||||||||||| |  | || ||||||||||  ||||  |||||||||||    
T  20521870 cattgaattatgtgattttatcaaattattatcggtatcggcgtgtcagtgtccgtgtcgtgtctggtgtc 20521940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 126 - 180
Target Start/End: Original strand, 20743297 - 20743351
Alignment:
Q  126 tacattgaattatgtgattttctcaaattattatcagggttggtgtgtcagtgtt 180  Q
    |||| |||||||||| ||||||||||||||||||| | || || |||||||||||    
T  20743297 tacactgaattatgtcattttctcaaattattatccgtgtcggcgtgtcagtgtt 20743351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 120 - 158
Target Start/End: Original strand, 22440613 - 22440651
Alignment:
Q  120 tataactacattgaattatgtgattttctcaaattatta 158  Q
    ||||| |||| ||||||||||||||||||||||||||||    
T  22440613 tataattacactgaattatgtgattttctcaaattatta 22440651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 105 - 171
Target Start/End: Complemental strand, 29205505 - 29205439
Alignment:
Q  105 tccaacaccgacatgtataactacattgaattatgtgattttctcaaattattatcagggttggtgt 171  Q
    |||||||||||||  | ||| |||| |||||||||||||||| ||||||||||| | | ||||||||    
T  29205505 tccaacaccgacacttgtaattacactgaattatgtgattttttcaaattattagccgtgttggtgt 29205439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 126 - 175
Target Start/End: Complemental strand, 5177024 - 5176975
Alignment:
Q  126 tacattgaattatgtgattttctcaaattattatcagggttggtgtgtca 175  Q
    ||||||||||||||| ||||||||||| ||||||||  ||||||| ||||    
T  5177024 tacattgaattatgttattttctcaaaatattatcaatgttggtgcgtca 5176975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 109 - 158
Target Start/End: Original strand, 5775360 - 5775409
Alignment:
Q  109 acaccgacatgtataactacattgaattatgtgattttctcaaattatta 158  Q
    |||||||||  ||||| |||| | ||||||||||||||||||||||||||    
T  5775360 acaccgacacatataattacacttaattatgtgattttctcaaattatta 5775409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 129 - 158
Target Start/End: Original strand, 34200293 - 34200322
Alignment:
Q  129 attgaattatgtgattttctcaaattatta 158  Q
    ||||||||||||||||||||||||||||||    
T  34200293 attgaattatgtgattttctcaaattatta 34200322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 109 - 158
Target Start/End: Original strand, 54580025 - 54580074
Alignment:
Q  109 acaccgacatgtataactacattgaattatgtgattttctcaaattatta 158  Q
    |||||||||  ||||| |||| |||||||||||||||| |||||||||||    
T  54580025 acaccgacacttataattacactgaattatgtgattttttcaaattatta 54580074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 131 - 219
Target Start/End: Complemental strand, 847986 - 847898
Alignment:
Q  131 tgaattatgtgattttctcaaattattatcagggttggtgtgtcagtgtttgtgttatgtctggtgtctctgtctgtatccgtgcttca 219  Q
    |||||||||| ||||||||||||||||| | |  | || |||||||||| |||||  |||| || |||  |||| ||||||||||||||    
T  847986 tgaattatgtaattttctcaaattattagcggcatcggcgtgtcagtgtctgtgtcgtgtccggggtccatgtccgtatccgtgcttca 847898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 131 - 171
Target Start/End: Complemental strand, 9996875 - 9996835
Alignment:
Q  131 tgaattatgtgattttctcaaattattatcagggttggtgt 171  Q
    ||||||||||||||||||||||||||| |||| || |||||    
T  9996875 tgaattatgtgattttctcaaattattgtcagtgtcggtgt 9996835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 120 - 220
Target Start/End: Original strand, 14126124 - 14126224
Alignment:
Q  120 tataactacattgaattatgtgattttctcaaattattatcagggttggtgtgtcagtgtttgtgttatgtctggtgtctctgtctgtatccgtgcttca 219  Q
    ||||| |||| |||||||||||| ||| ||||||||||| ||| || || |||| ||||| |||||  ||||   ||||| ||||||||||  |||||||    
T  14126124 tataattacactgaattatgtgactttatcaaattattaacagtgtcggcgtgttagtgtctgtgtcgtgtccactgtctgtgtctgtatctatgcttca 14126223  T
Q  220 t 220  Q
    |    
T  14126224 t 14126224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 126 - 158
Target Start/End: Original strand, 14465094 - 14465126
Alignment:
Q  126 tacattgaattatgtgattttctcaaattatta 158  Q
    ||||||||||||||||||||| |||||||||||    
T  14465094 tacattgaattatgtgattttttcaaattatta 14465126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 126 - 222
Target Start/End: Original strand, 34515893 - 34515989
Alignment:
Q  126 tacattgaattatgtgattttctcaaattattatcagggttggtgtgtcagtgtttgtgttatgtctggtgtctctgtctgtatccgtgcttcatag 222  Q
    |||| |||||||||| |||||||  |||||||||| | || |  ||||||||||| ||||| |||||| ||| | ||||||| ||||| || |||||    
T  34515893 tacactgaattatgtcattttcttgaattattatccgtgtcgacgtgtcagtgttcgtgttgtgtctgatgtttgtgtctgtgtccgtactgcatag 34515989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 120 - 179
Target Start/End: Original strand, 35723397 - 35723457
Alignment:
Q  120 tataactacattgaattatgtg-attttctcaaattattatcagggttggtgtgtcagtgt 179  Q
    ||||| |||||||||||||||| ||||||||||||||||| | | || || ||||||||||    
T  35723397 tataattacattgaattatgtgtattttctcaaattattagcggtgtcggcgtgtcagtgt 35723457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 46; Significance: 3e-17; HSPs: 41)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 109 - 222
Target Start/End: Original strand, 2896123 - 2896236
Alignment:
Q  109 acaccgacatgtataactacattgaattatgtgattttctcaaattattatcagggttggtgtgtcagtgtttgtgttatgtctggtgtctctgtctgta 208  Q
    |||||||||| |||| ||||| |||||||||||||||||||||||||||| | | || || ||||||||||  ||||| |||| | ||||  || |||||    
T  2896123 acaccgacatatatagctacactgaattatgtgattttctcaaattattagcggtgtcggcgtgtcagtgtccgtgttgtgtccgttgtccgtgactgta 2896222  T
Q  209 tccgtgcttcatag 222  Q
    ||||| ||||||||    
T  2896223 tccgttcttcatag 2896236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 120 - 179
Target Start/End: Complemental strand, 6427396 - 6427337
Alignment:
Q  120 tataactacattgaattatgtgattttctcaaattattatcagggttggtgtgtcagtgt 179  Q
    ||||| ||||||||||||||||||||||||||||||||| | | ||||| ||||||||||    
T  6427396 tataattacattgaattatgtgattttctcaaattattagcggtgttggcgtgtcagtgt 6427337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 109 - 219
Target Start/End: Complemental strand, 9709877 - 9709767
Alignment:
Q  109 acaccgacatgtataactacattgaattatgtgattttctcaaattattatcagggttggtgtgtcagtgtttgtgttatgtctggtgtctctgtctgta 208  Q
    |||||||||  ||||| ||||  ||||||||||||||||||||||||||| | | || ||  |||||||||  ||||  |||||| ||||  ||||||||    
T  9709877 acaccgacacatataattacaacgaattatgtgattttctcaaattattagcggtgtaggcatgtcagtgtccgtgtcgtgtctgatgtccatgtctgta 9709778  T
Q  209 tccgtgcttca 219  Q
    |||||||||||    
T  9709777 tccgtgcttca 9709767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 105 - 158
Target Start/End: Original strand, 1864878 - 1864931
Alignment:
Q  105 tccaacaccgacatgtataactacattgaattatgtgattttctcaaattatta 158  Q
    |||||||||||||  ||||| |||| ||||||||||||||||||||||||||||    
T  1864878 tccaacaccgacacatataattacactgaattatgtgattttctcaaattatta 1864931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 119 - 222
Target Start/End: Complemental strand, 34298483 - 34298380
Alignment:
Q  119 gtataactacattgaattatgtgattttctcaaattattatcagggttggtgtgtcagtgtttgtgttatgtctggtgtctctgtctgtatccgtgcttc 218  Q
    |||||| |||| ||||||||||||||||||||||||||||   | || ||||||||||| |  ||||  ||||||||||   |||||||||| ||| |||    
T  34298483 gtataattacactgaattatgtgattttctcaaattattagtggtgtcggtgtgtcagtttccgtgtcgtgtctggtgtacgtgtctgtatcggtgtttc 34298384  T
Q  219 atag 222  Q
    ||||    
T  34298383 atag 34298380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 124 - 179
Target Start/End: Original strand, 40285671 - 40285726
Alignment:
Q  124 actacattgaattatgtgattttctcaaattattatcagggttggtgtgtcagtgt 179  Q
    |||||| ||||||||| |||||||||||||||||| | | ||||||||||||||||    
T  40285671 actacactgaattatgcgattttctcaaattattagcggtgttggtgtgtcagtgt 40285726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 120 - 222
Target Start/End: Original strand, 398778 - 398880
Alignment:
Q  120 tataactacattgaattatgtgattttctcaaattattatcagggttggtgtgtcagtgtttgtgttatgtctggtgtctctgtctgtatccgtgcttca 219  Q
    ||||| |||| |||||||||||||||| ||||||||||| | | || || ||||||||||  ||||  |||| ||||||   ||| ||||||||||||||    
T  398778 tataattacactgaattatgtgattttttcaaattattagcggtgtcggcgtgtcagtgtccgtgtcgtgtccggtgtccgcgtccgtatccgtgcttca 398877  T
Q  220 tag 222  Q
    |||    
T  398878 tag 398880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 109 - 179
Target Start/End: Complemental strand, 36878518 - 36878448
Alignment:
Q  109 acaccgacatgtataactacattgaattatgtgattttctcaaattattatcagggttggtgtgtcagtgt 179  Q
    |||||||||  ||||| |||| |||||||||||||||||||||||||||| | | || || ||||||||||    
T  36878518 acaccgacacctataattacactgaattatgtgattttctcaaattattagcggtgtcggcgtgtcagtgt 36878448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 131 - 188
Target Start/End: Original strand, 9449032 - 9449089
Alignment:
Q  131 tgaattatgtgattttctcaaattattatcagggttggtgtgtcagtgtttgtgttat 188  Q
    |||||||||||||||| |||||||||||   | ||||||||||| |||||||||||||    
T  9449032 tgaattatgtgattttttcaaattattaatggtgttggtgtgtctgtgtttgtgttat 9449089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 121 - 218
Target Start/End: Original strand, 25452162 - 25452259
Alignment:
Q  121 ataactacattgaattatgtgattttctcaaattattatcagggttggtgtgtcagtgtttgtgttatgtctggtgtctctgtctgtatccgtgcttc 218  Q
    |||| |||| ||||||||| |||||||||||||||||| ||| |||||  |||| |||| | ||| |||||   ||||| ||||| ||||||||||||    
T  25452162 ataattacactgaattatgagattttctcaaattattagcagtgttggcatgtcggtgtctttgtcatgtccaatgtctgtgtctatatccgtgcttc 25452259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 109 - 222
Target Start/End: Complemental strand, 38503377 - 38503264
Alignment:
Q  109 acaccgacatgtataactacattgaattatgtgattttctcaaattattatcagggttggtgtgtcagtgtttgtgttatgtctggtgtctctgtctgta 208  Q
    |||||||||  ||||| |||| |||| ||| ||||||||||||||||||| | | || ||||||| |||||  |||| |||||  |||||  |||| |||    
T  38503377 acaccgacacatataattacactgaaatatatgattttctcaaattattagcggtgtcggtgtgttagtgtccgtgtcatgtcccgtgtccgtgtccgta 38503278  T
Q  209 tccgtgcttcatag 222  Q
    ||||||| ||||||    
T  38503277 tccgtgcatcatag 38503264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 109 - 222
Target Start/End: Complemental strand, 47989554 - 47989442
Alignment:
Q  109 acaccgacatgtataactacattgaattatgtgattttctcaaattattatcagggttggtgtgtcagtgtttgtgttatgtctggtgtctctgtctgta 208  Q
    |||||||||  | ||| |||| |||||||||||||||| | ||||||||||  | || || |||||||||| |||||  |||||||| ||  ||||||||    
T  47989554 acaccgacacttgtaattacactgaattatgtgatttttttaaattattatt-gtgtcggcgtgtcagtgtctgtgtcgtgtctggtatccgtgtctgta 47989456  T
Q  209 tccgtgcttcatag 222  Q
    ||| ||||||||||    
T  47989455 tccatgcttcatag 47989442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 120 - 160
Target Start/End: Original strand, 17425106 - 17425146
Alignment:
Q  120 tataactacattgaattatgtgattttctcaaattattatc 160  Q
    ||||| ||||||||||||||||||||| |||||||||||||    
T  17425106 tataattacattgaattatgtgattttatcaaattattatc 17425146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 131 - 179
Target Start/End: Complemental strand, 36906032 - 36905984
Alignment:
Q  131 tgaattatgtgattttctcaaattattatcagggttggtgtgtcagtgt 179  Q
    |||||||||||||||||||| ||||||| | | ||||||||||||||||    
T  36906032 tgaattatgtgattttctcagattattagcggtgttggtgtgtcagtgt 36905984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 120 - 160
Target Start/End: Original strand, 40747786 - 40747826
Alignment:
Q  120 tataactacattgaattatgtgattttctcaaattattatc 160  Q
    ||||| ||||||||||||||| |||||||||||||||||||    
T  40747786 tataattacattgaattatgtcattttctcaaattattatc 40747826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 126 - 174
Target Start/End: Complemental strand, 42325600 - 42325552
Alignment:
Q  126 tacattgaattatgtgattttctcaaattattatcagggttggtgtgtc 174  Q
    |||| |||||||||| ||||||||||||||||||| | |||||||||||    
T  42325600 tacactgaattatgtcattttctcaaattattatcggtgttggtgtgtc 42325552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 126 - 185
Target Start/End: Original strand, 27471585 - 27471644
Alignment:
Q  126 tacattgaattatgtgattttctcaaattattatcagggttggtgtgtcagtgtttgtgt 185  Q
    |||| ||||||||||| |||||||||||||||| | |  | |||||||||||||||||||    
T  27471585 tacactgaattatgtgcttttctcaaattattagcggtatcggtgtgtcagtgtttgtgt 27471644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 109 - 156
Target Start/End: Complemental strand, 44482287 - 44482240
Alignment:
Q  109 acaccgacatgtataactacattgaattatgtgattttctcaaattat 156  Q
    |||||||||  ||||| |||| ||||||||||||||||||||||||||    
T  44482287 acaccgacacatataattacactgaattatgtgattttctcaaattat 44482240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 121 - 159
Target Start/End: Original strand, 2288181 - 2288219
Alignment:
Q  121 ataactacattgaattatgtgattttctcaaattattat 159  Q
    |||| ||||||||||||||||||||||| ||||||||||    
T  2288181 ataattacattgaattatgtgattttcttaaattattat 2288219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 120 - 158
Target Start/End: Original strand, 7918224 - 7918262
Alignment:
Q  120 tataactacattgaattatgtgattttctcaaattatta 158  Q
    ||||| |||| ||||||||||||||||||||||||||||    
T  7918224 tataattacactgaattatgtgattttctcaaattatta 7918262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 126 - 160
Target Start/End: Complemental strand, 11571625 - 11571591
Alignment:
Q  126 tacattgaattatgtgattttctcaaattattatc 160  Q
    ||||||||||||||| |||||||||||||||||||    
T  11571625 tacattgaattatgtcattttctcaaattattatc 11571591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 120 - 158
Target Start/End: Complemental strand, 40181917 - 40181879
Alignment:
Q  120 tataactacattgaattatgtgattttctcaaattatta 158  Q
    ||||| |||| ||||||||||||||||||||||||||||    
T  40181917 tataattacactgaattatgtgattttctcaaattatta 40181879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 109 - 167
Target Start/End: Original strand, 41017406 - 41017464
Alignment:
Q  109 acaccgacatgtataactacattgaattatgtgattttctcaaattattatcagggttg 167  Q
    ||||| |||| ||||| |||||| |||||||| |||||||||||||||||  |||||||    
T  41017406 acaccaacatatataattacattaaattatgtcattttctcaaattattactagggttg 41017464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 105 - 222
Target Start/End: Original strand, 609456 - 609573
Alignment:
Q  105 tccaacaccgacatgtataactacattgaattatgtgattttctcaaattattatcagggttggtgtgtcagtgtttgtgttatgtctggtgtctctgtc 204  Q
    ||||| |||||||| ||| | ||  ||||||||||| |||||||||||||||||   | || || |||||||||||  |||  |||| | ||||| ||||    
T  609456 tccaataccgacatatatgattatgttgaattatgtaattttctcaaattattagtggtgtcggcgtgtcagtgttgatgtcgtgtccgatgtctgtgtc 609555  T
Q  205 tgtatccgtgcttcatag 222  Q
     |||| ||||||||||||    
T  609556 cgtatacgtgcttcatag 609573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 129 - 158
Target Start/End: Complemental strand, 1262921 - 1262892
Alignment:
Q  129 attgaattatgtgattttctcaaattatta 158  Q
    ||||||||||||||||||||||||||||||    
T  1262921 attgaattatgtgattttctcaaattatta 1262892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 109 - 158
Target Start/End: Original strand, 1486711 - 1486760
Alignment:
Q  109 acaccgacatgtataactacattgaattatgtgattttctcaaattatta 158  Q
    |||||||||  ||||| |||| |||||||||||||||| |||||||||||    
T  1486711 acaccgacacttataattacactgaattatgtgattttttcaaattatta 1486760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 126 - 159
Target Start/End: Complemental strand, 3921707 - 3921674
Alignment:
Q  126 tacattgaattatgtgattttctcaaattattat 159  Q
    ||||||||||||||| ||||||||||||||||||    
T  3921707 tacattgaattatgtcattttctcaaattattat 3921674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 76 - 160
Target Start/End: Original strand, 11412736 - 11412821
Alignment:
Q  76 gcatgtcctagtgtaggacatg-gtcggtttccaacaccgacatgtataactacattgaattatgtgattttctcaaattattatc 160  Q
    |||||||||||||| |||||   || ||| |||||||||||||  ||| |  |||||||||||||| ||||||||| |||||||||    
T  11412736 gcatgtcctagtgtcggacacatgttggtgtccaacaccgacacctatgatcacattgaattatgtcattttctcatattattatc 11412821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 120 - 185
Target Start/End: Original strand, 19562634 - 19562699
Alignment:
Q  120 tataactacattgaattatgtgattttctcaaattattatcagggttggtgtgtcagtgtttgtgt 185  Q
    ||||| |||| |||| |||| |||||||||||||||||| ||| || || ||||||||||| ||||    
T  19562634 tataattacactgaactatgagattttctcaaattattagcagtgtcggcgtgtcagtgttcgtgt 19562699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 109 - 158
Target Start/End: Original strand, 38078663 - 38078712
Alignment:
Q  109 acaccgacatgtataactacattgaattatgtgattttctcaaattatta 158  Q
    |||||||||  | ||| ||||||||||||||||||||| |||||||||||    
T  38078663 acaccgacacttgtaattacattgaattatgtgattttttcaaattatta 38078712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 133 - 222
Target Start/End: Original strand, 41877496 - 41877585
Alignment:
Q  133 aattatgtgattttctcaaattattatcagggttggtgtgtcagtgtttgtgttatgtctggtgtctctgtctgtatccgtgcttcatag 222  Q
    |||||||| ||||||||||||||||| | | || || ||  |||||| |||||  |||||||| ||  |||| |||||||||||||||||    
T  41877496 aattatgtaattttctcaaattattagcggtgtcggcgtaccagtgtctgtgtcgtgtctggtatccatgtccgtatccgtgcttcatag 41877585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 111 - 152
Target Start/End: Original strand, 46914043 - 46914084
Alignment:
Q  111 accgacatgtataactacattgaattatgtgattttctcaaa 152  Q
    |||||||| ||||| ||||||||||||||| |||||||||||    
T  46914043 accgacatttataattacattgaattatgttattttctcaaa 46914084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #33
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 128 - 160
Target Start/End: Original strand, 351105 - 351137
Alignment:
Q  128 cattgaattatgtgattttctcaaattattatc 160  Q
    ||||||||||||||||||| |||||||||||||    
T  351105 cattgaattatgtgattttatcaaattattatc 351137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #34
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 106 - 174
Target Start/End: Complemental strand, 10233313 - 10233245
Alignment:
Q  106 ccaacaccgacatgtataactacattgaattatgtgattttctcaaattattatcagggttggtgtgtc 174  Q
    ||||||| ||||  ||||| |||| ||||||||||||||||||||| ||||||   | |||||||||||    
T  10233313 ccaacacagacacatataattacactgaattatgtgattttctcaatttattagtggtgttggtgtgtc 10233245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #35
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 126 - 158
Target Start/End: Original strand, 12443479 - 12443511
Alignment:
Q  126 tacattgaattatgtgattttctcaaattatta 158  Q
    |||| ||||||||||||||||||||||||||||    
T  12443479 tacactgaattatgtgattttctcaaattatta 12443511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #36
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 131 - 179
Target Start/End: Complemental strand, 16812578 - 16812530
Alignment:
Q  131 tgaattatgtgattttctcaaattattatcagggttggtgtgtcagtgt 179  Q
    |||||||||||||||| ||||||||||||  | || |||||||||||||    
T  16812578 tgaattatgtgattttgtcaaattattattggtgtcggtgtgtcagtgt 16812530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #37
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 120 - 156
Target Start/End: Complemental strand, 19324608 - 19324572
Alignment:
Q  120 tataactacattgaattatgtgattttctcaaattat 156  Q
    ||||| |||| ||||||||||||||||||||||||||    
T  19324608 tataattacactgaattatgtgattttctcaaattat 19324572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #38
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 120 - 156
Target Start/End: Original strand, 25098568 - 25098604
Alignment:
Q  120 tataactacattgaattatgtgattttctcaaattat 156  Q
    ||||| |||| ||||||||||||||||||||||||||    
T  25098568 tataattacactgaattatgtgattttctcaaattat 25098604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #39
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 120 - 156
Target Start/End: Complemental strand, 25361932 - 25361896
Alignment:
Q  120 tataactacattgaattatgtgattttctcaaattat 156  Q
    ||||| |||| ||||||||||||||||||||||||||    
T  25361932 tataattacactgaattatgtgattttctcaaattat 25361896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #40
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 126 - 158
Target Start/End: Complemental strand, 31015083 - 31015051
Alignment:
Q  126 tacattgaattatgtgattttctcaaattatta 158  Q
    |||| ||||||||||||||||||||||||||||    
T  31015083 tacactgaattatgtgattttctcaaattatta 31015051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #41
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 124 - 160
Target Start/End: Original strand, 48785281 - 48785317
Alignment:
Q  124 actacattgaattatgtgattttctcaaattattatc 160  Q
    |||| |||||||||||| |||||||||||||||||||    
T  48785281 actatattgaattatgttattttctcaaattattatc 48785317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 28)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 120 - 222
Target Start/End: Complemental strand, 44067562 - 44067460
Alignment:
Q  120 tataactacattgaattatgtgattttctcaaattattatcagggttggtgtgtcagtgtttgtgttatgtctggtgtctctgtctgtatccgtgcttca 219  Q
    ||||| |||| || ||||||| ||||||||||||||||||| | || || ||||||||||  ||||  |||||||||||  ||||||| |||||||||||    
T  44067562 tataattacactgtattatgtcattttctcaaattattatccgtgtcggcgtgtcagtgtcggtgtggtgtctggtgtccgtgtctgtgtccgtgcttca 44067463  T
Q  220 tag 222  Q
    |||    
T  44067462 tag 44067460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 109 - 159
Target Start/End: Complemental strand, 12985449 - 12985399
Alignment:
Q  109 acaccgacatgtataactacattgaattatgtgattttctcaaattattat 159  Q
    |||||||||| ||| | ||||||||||||||||||||||||||||||||||    
T  12985449 acaccgacatatatgattacattgaattatgtgattttctcaaattattat 12985399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 109 - 158
Target Start/End: Complemental strand, 14134756 - 14134707
Alignment:
Q  109 acaccgacatgtataactacattgaattatgtgattttctcaaattatta 158  Q
    |||||||||| ||||| |||| ||||||||||||||||||||||||||||    
T  14134756 acaccgacatatataattacactgaattatgtgattttctcaaattatta 14134707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 110 - 158
Target Start/End: Original strand, 31236580 - 31236628
Alignment:
Q  110 caccgacatgtataactacattgaattatgtgattttctcaaattatta 158  Q
    ||||||||  ||||| |||||||||||||||||||||||||||||||||    
T  31236580 caccgacacatataattacattgaattatgtgattttctcaaattatta 31236628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 107 - 221
Target Start/End: Complemental strand, 11803318 - 11803204
Alignment:
Q  107 caacaccgacatgtataactacattgaattatgtgattttctcaaattattatcagggttggtgtgtcagtgtttgtgttatgtctggtgtctctgtctg 206  Q
    ||||||| |||  ||||| |||| |||||||||||||||||| ||||||||| ||| ||  |||| |||||||| ||||  ||| ||||||   ||||||    
T  11803318 caacaccaacacatataattacactgaattatgtgattttcttaaattattaacagtgtcagtgtatcagtgttcgtgtcgtgtttggtgttcgtgtctg 11803219  T
Q  207 tatccgtgcttcata 221  Q
    ||| |||| ||||||    
T  11803218 tattcgtgtttcata 11803204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 105 - 158
Target Start/End: Complemental strand, 7658524 - 7658471
Alignment:
Q  105 tccaacaccgacatgtataactacattgaattatgtgattttctcaaattatta 158  Q
    |||||||||||||  ||||| |||| |||||||||| |||||||||||||||||    
T  7658524 tccaacaccgacaaatataattacactgaattatgtaattttctcaaattatta 7658471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 109 - 158
Target Start/End: Original strand, 12606831 - 12606880
Alignment:
Q  109 acaccgacatgtataactacattgaattatgtgattttctcaaattatta 158  Q
    |||||||||  ||||| ||||||||||||| |||||||||||||||||||    
T  12606831 acaccgacacatataattacattgaattatatgattttctcaaattatta 12606880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 129 - 222
Target Start/End: Complemental strand, 22652013 - 22651920
Alignment:
Q  129 attgaattatgtgattttctcaaattattatcagggttggtgtgtcagtgtttgtgttatgtctggtgtctctgtctgtatccgtgcttcatag 222  Q
    |||||||||||||||||| ||||||||||| | | || || ||||||||||  ||||  |||| ||||||  |||| |||||||| ||||||||    
T  22652013 attgaattatgtgattttttcaaattattagctgtgtcggcgtgtcagtgtccgtgtcgtgtccggtgtcagtgtccgtatccgtacttcatag 22651920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 109 - 221
Target Start/End: Original strand, 926790 - 926902
Alignment:
Q  109 acaccgacatgtataactacattgaattatgtgattttctcaaattattatcagggttggtgtgtcagtgtttgtgttatgtctggtgtctctgtctgta 208  Q
    |||||||||  ||||| |||| ||||  ||| ||||||||||||||||||  || ||||| ||||||||||  ||||  |||| ||||||  |||  |||    
T  926790 acaccgacacttataattacactgaacaatgagattttctcaaattattaggagtgttggcgtgtcagtgtccgtgtcgtgtccggtgtccgtgttcgta 926889  T
Q  209 tccgtgcttcata 221  Q
    |||||||||||||    
T  926890 tccgtgcttcata 926902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 126 - 162
Target Start/End: Complemental strand, 3508092 - 3508056
Alignment:
Q  126 tacattgaattatgtgattttctcaaattattatcag 162  Q
    ||||||||||||||| |||||||||||||||||||||    
T  3508092 tacattgaattatgttattttctcaaattattatcag 3508056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 126 - 158
Target Start/End: Original strand, 29447129 - 29447161
Alignment:
Q  126 tacattgaattatgtgattttctcaaattatta 158  Q
    |||||||||||||||||||||||||||||||||    
T  29447129 tacattgaattatgtgattttctcaaattatta 29447161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 131 - 222
Target Start/End: Original strand, 29510328 - 29510419
Alignment:
Q  131 tgaattatgtgattttctcaaattattatcagggttggtgtgtcagtgtttgtgttatgtctggtgtctctgtctgtatccgtgcttcatag 222  Q
    |||||| ||||||||| ||||||||||| | | || || ||||||||||  ||||  |||| ||||||  |||| |||||||||||||||||    
T  29510328 tgaattttgtgattttttcaaattattagctgtgtcggcgtgtcagtgtccgtgtcgtgtccggtgtccatgtcagtatccgtgcttcatag 29510419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 120 - 159
Target Start/End: Original strand, 34201059 - 34201098
Alignment:
Q  120 tataactacattgaattatgtgattttctcaaattattat 159  Q
    ||||| ||||||||||||||| ||||||||||||||||||    
T  34201059 tataattacattgaattatgtcattttctcaaattattat 34201098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 120 - 158
Target Start/End: Complemental strand, 3025597 - 3025559
Alignment:
Q  120 tataactacattgaattatgtgattttctcaaattatta 158  Q
    ||||| |||| ||||||||||||||||||||||||||||    
T  3025597 tataattacactgaattatgtgattttctcaaattatta 3025559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 109 - 179
Target Start/End: Original strand, 13844598 - 13844668
Alignment:
Q  109 acaccgacatgtataactacattgaattatgtgattttctcaaattattatcagggttggtgtgtcagtgt 179  Q
    |||||||||  ||||| |||| | |||||||||||||||||||||||||| ||| || || ||||| ||||    
T  13844598 acaccgacacatataattacactcaattatgtgattttctcaaattattagcagtgtcggcgtgtccgtgt 13844668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 109 - 179
Target Start/End: Original strand, 33405386 - 33405456
Alignment:
Q  109 acaccgacatgtataactacattgaattatgtgattttctcaaattattatcagggttggtgtgtcagtgt 179  Q
    |||||||||  ||||| |||| | ||||||||| |||||||||||||||| |||||   ||||||||||||    
T  33405386 acaccgacacatataattacactaaattatgtgtttttctcaaattattaacagggccagtgtgtcagtgt 33405456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 120 - 158
Target Start/End: Complemental strand, 34897131 - 34897093
Alignment:
Q  120 tataactacattgaattatgtgattttctcaaattatta 158  Q
    ||||| |||| ||||||||||||||||||||||||||||    
T  34897131 tataattacactgaattatgtgattttctcaaattatta 34897093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 109 - 158
Target Start/End: Original strand, 4786340 - 4786389
Alignment:
Q  109 acaccgacatgtataactacattgaattatgtgattttctcaaattatta 158  Q
    |||||||||  ||||| |||| |||||||||||||||||| |||||||||    
T  4786340 acaccgacacatataattacactgaattatgtgattttcttaaattatta 4786389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 109 - 158
Target Start/End: Original strand, 11927088 - 11927137
Alignment:
Q  109 acaccgacatgtataactacattgaattatgtgattttctcaaattatta 158  Q
    |||||||||  ||||| |||| |||||||||||||||| |||||||||||    
T  11927088 acaccgacacatataattacactgaattatgtgattttatcaaattatta 11927137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 126 - 159
Target Start/End: Complemental strand, 14227262 - 14227229
Alignment:
Q  126 tacattgaattatgtgattttctcaaattattat 159  Q
    ||||||||||||||| ||||||||||||||||||    
T  14227262 tacattgaattatgttattttctcaaattattat 14227229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 109 - 158
Target Start/End: Original strand, 20679397 - 20679446
Alignment:
Q  109 acaccgacatgtataactacattgaattatgtgattttctcaaattatta 158  Q
    |||||||||  ||||| |||| |||| |||||||||||||||||||||||    
T  20679397 acaccgacacttataattacactgaactatgtgattttctcaaattatta 20679446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 133 - 222
Target Start/End: Original strand, 22197768 - 22197857
Alignment:
Q  133 aattatgtgattttctcaaattattatcagggttggtgtgtcagtgtttgtgttatgtctggtgtctctgtctgtatccgtgcttcatag 222  Q
    |||||||||| ||| ||||||||||| | | ||||| |||| ||||| |||||  |||| ||||||  |||||  |||||||||||||||    
T  22197768 aattatgtgaatttttcaaattattagctgtgttggcgtgttagtgtctgtgtcgtgtccggtgtccgtgtctagatccgtgcttcatag 22197857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 105 - 158
Target Start/End: Complemental strand, 26434241 - 26434188
Alignment:
Q  105 tccaacaccgacatgtataactacattgaattatgtgattttctcaaattatta 158  Q
    |||||||||||||  | ||| || |||||||||||||||||||||||| |||||    
T  26434241 tccaacaccgacacttttaattatattgaattatgtgattttctcaaactatta 26434188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 126 - 159
Target Start/End: Original strand, 37225762 - 37225795
Alignment:
Q  126 tacattgaattatgtgattttctcaaattattat 159  Q
    ||||||||||||||| ||||||||||||||||||    
T  37225762 tacattgaattatgttattttctcaaattattat 37225795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 105 - 158
Target Start/End: Original strand, 38278173 - 38278226
Alignment:
Q  105 tccaacaccgacatgtataactacattgaattatgtgattttctcaaattatta 158  Q
    ||||||||||| | |||||| || ||| |||||||||||||||| |||||||||    
T  38278173 tccaacaccgatacgtataattatattaaattatgtgattttcttaaattatta 38278226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 126 - 158
Target Start/End: Original strand, 29198498 - 29198530
Alignment:
Q  126 tacattgaattatgtgattttctcaaattatta 158  Q
    ||||||||||||||| |||||||||||||||||    
T  29198498 tacattgaattatgtcattttctcaaattatta 29198530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 124 - 160
Target Start/End: Original strand, 34739078 - 34739114
Alignment:
Q  124 actacattgaattatgtgattttctcaaattattatc 160  Q
    ||||||||||||||||| ||||||||| |||||||||    
T  34739078 actacattgaattatgtcattttctcatattattatc 34739114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #28
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 109 - 157
Target Start/End: Complemental strand, 40332248 - 40332200
Alignment:
Q  109 acaccgacatgtataactacattgaattatgtgattttctcaaattatt 157  Q
    |||||||||  | ||| |||| |||||||||||||||||||||||||||    
T  40332248 acaccgacacttgtaattacactgaattatgtgattttctcaaattatt 40332200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 26)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 107 - 177
Target Start/End: Original strand, 18420434 - 18420504
Alignment:
Q  107 caacaccgacatgtataactacattgaattatgtgattttctcaaattattatcagggttggtgtgtcagt 177  Q
    |||||||||||  ||||| | ||||||||||||||||||||||||||||||| ||| ||||| ||||||||    
T  18420434 caacaccgacacttataattgcattgaattatgtgattttctcaaattattagcagtgttggcgtgtcagt 18420504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 105 - 222
Target Start/End: Complemental strand, 31284110 - 31283992
Alignment:
Q  105 tccaacaccgacatgta-taactacattgaattatgtgattttctcaaattattatcagggttggtgtgtcagtgtttgtgttatgtctggtgtctctgt 203  Q
    |||||||||||||  || ||| |||| || ||||||||||||||||||||||||| ||| || || |||| |||||  |||||||||| ||||||  |||    
T  31284110 tccaacaccgacacataataattacaatggattatgtgattttctcaaattattagcagtgtcggcgtgtaagtgtacgtgttatgtccggtgtccgtgt 31284011  T
Q  204 ctgtatccgtgcttcatag 222  Q
    | ||||| |||||||||||    
T  31284010 ccgtatctgtgcttcatag 31283992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 121 - 185
Target Start/End: Original strand, 21782832 - 21782896
Alignment:
Q  121 ataactacattgaattatgtgattttctcaaattattatcagggttggtgtgtcagtgtttgtgt 185  Q
    |||| |||| |||||||||||||||||||||||||||| ||| || || ||||||||||||||||    
T  21782832 ataattacactgaattatgtgattttctcaaattattagcagtgtcggcgtgtcagtgtttgtgt 21782896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 120 - 185
Target Start/End: Complemental strand, 35449559 - 35449494
Alignment:
Q  120 tataactacattgaattatgtgattttctcaaattattatcagggttggtgtgtcagtgtttgtgt 185  Q
    ||||| |||| |||||| ||||||||||||||||||||| ||| |||||  |||||||||||||||    
T  35449559 tataattacactgaattctgtgattttctcaaattattaacagtgttggcttgtcagtgtttgtgt 35449494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 120 - 220
Target Start/End: Complemental strand, 21616808 - 21616708
Alignment:
Q  120 tataactacattgaattatgtgattttctcaaattattatcagggttggtgtgtcagtgtttgtgttatgtctggtgtctctgtctgtatccgtgcttca 219  Q
    ||||| |||| |||||||||||||||||||||||||||| | | || || ||||| ||||  ||||  ||||  |||||| |||| ||||||||||||||    
T  21616808 tataattacactgaattatgtgattttctcaaattattagcggtgtcggcgtgtccgtgtccgtgtcgtgtcatgtgtctgtgtccgtatccgtgcttca 21616709  T
Q  220 t 220  Q
    |    
T  21616708 t 21616708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 110 - 222
Target Start/End: Complemental strand, 23718082 - 23717977
Alignment:
Q  110 caccgacatgtataactacattgaattatgtgattttctcaaattattatcagggttggtgtgtcagtgtttgtgttatgtctggtgtctctgtctgtat 209  Q
    ||||||||  ||||| |||| |||||||||||| ||||||||||||||| | | || |||||||||||||  |||| ||||| |       |||||||||    
T  23718082 caccgacacatataattacactgaattatgtgactttctcaaattattagcggtgtcggtgtgtcagtgtccgtgtcatgtccg-------tgtctgtat 23717990  T
Q  210 ccgtgcttcatag 222  Q
    |||||||||||||    
T  23717989 ccgtgcttcatag 23717977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 110 - 222
Target Start/End: Complemental strand, 24105754 - 24105649
Alignment:
Q  110 caccgacatgtataactacattgaattatgtgattttctcaaattattatcagggttggtgtgtcagtgtttgtgttatgtctggtgtctctgtctgtat 209  Q
    ||||||||  ||||| |||| |||||||||||| ||||||||||||||| | | || |||||||||||||  |||| ||||| |       |||||||||    
T  24105754 caccgacacatataattacactgaattatgtgactttctcaaattattagcggtgtcggtgtgtcagtgtccgtgtcatgtccg-------tgtctgtat 24105662  T
Q  210 ccgtgcttcatag 222  Q
    |||||||||||||    
T  24105661 ccgtgcttcatag 24105649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 109 - 183
Target Start/End: Complemental strand, 37497177 - 37497103
Alignment:
Q  109 acaccgacatgtataactacattgaattatgtgattttctcaaattattatcagggttggtgtgtcagtgtttgt 183  Q
    |||||||||  ||| | ||||||||||| ||  ||||||||||||||||||||| || | |||||||||||||||    
T  37497177 acaccgacagatattattacattgaattgtggcattttctcaaattattatcagtgtcgatgtgtcagtgtttgt 37497103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 121 - 162
Target Start/End: Complemental strand, 4332971 - 4332930
Alignment:
Q  121 ataactacattgaattatgtgattttctcaaattattatcag 162  Q
    |||| |||||||||||||||||||||| ||||||||||||||    
T  4332971 ataattacattgaattatgtgattttcccaaattattatcag 4332930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 121 - 221
Target Start/End: Complemental strand, 18276566 - 18276466
Alignment:
Q  121 ataactacattgaattatgtgattttctcaaattattatcagggttggtgtgtcagtgtttgtgttatgtctggtgtctctgtctgtatccgtgcttcat 220  Q
    |||| |||| ||||||| |||||||||||||||||||| | | || ||  | ||||||| ||| |  |||| ||||||  ||||||||||||||||||||    
T  18276566 ataattacactgaattaagtgattttctcaaattattagcggtgtcggcatatcagtgtctgtatcgtgtccggtgtccgtgtctgtatccgtgcttcat 18276467  T
Q  221 a 221  Q
    |    
T  18276466 a 18276466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 111 - 179
Target Start/End: Original strand, 30527599 - 30527667
Alignment:
Q  111 accgacatgtataactacattgaattatgtgattttctcaaattattatcagggttggtgtgtcagtgt 179  Q
    |||||||  ||||| |||| | |||||| ||||||||||||||||||| ||| || |||||||||||||    
T  30527599 accgacacatataattacactaaattatatgattttctcaaattattaacagtgtgggtgtgtcagtgt 30527667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 109 - 160
Target Start/End: Complemental strand, 31026752 - 31026701
Alignment:
Q  109 acaccgacatgtataactacattgaattatgtgattttctcaaattattatc 160  Q
    |||||||||| ||| | ||||||||||||||| ||||||| |||||||||||    
T  31026752 acaccgacatatatgattacattgaattatgtcattttcttaaattattatc 31026701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 108 - 159
Target Start/End: Original strand, 44605140 - 44605191
Alignment:
Q  108 aacaccgacatgtataactacattgaattatgtgattttctcaaattattat 159  Q
    ||||||||||  | ||| ||||||||||||||| ||||||||||||||||||    
T  44605140 aacaccgacacatgtaattacattgaattatgttattttctcaaattattat 44605191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 126 - 160
Target Start/End: Complemental strand, 18571012 - 18570978
Alignment:
Q  126 tacattgaattatgtgattttctcaaattattatc 160  Q
    ||||||||||||||| |||||||||||||||||||    
T  18571012 tacattgaattatgtcattttctcaaattattatc 18570978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 126 - 160
Target Start/End: Complemental strand, 30563449 - 30563415
Alignment:
Q  126 tacattgaattatgtgattttctcaaattattatc 160  Q
    ||||||||||||||| |||||||||||||||||||    
T  30563449 tacattgaattatgtcattttctcaaattattatc 30563415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 108 - 158
Target Start/End: Complemental strand, 39026876 - 39026826
Alignment:
Q  108 aacaccgacatgtataactacattgaattatgtgattttctcaaattatta 158  Q
    ||||||||||| ||||| |||||| || |||||||||||||||| ||||||    
T  39026876 aacaccgacatttataattacattaaaatatgtgattttctcaagttatta 39026826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 106 - 176
Target Start/End: Complemental strand, 39279735 - 39279665
Alignment:
Q  106 ccaacaccgacatgtataactacattgaattatgtgattttctcaaattattatcagggttggtgtgtcag 176  Q
    ||||||||||||  ||||| |||| |||||||| ||||||||||| ||||||| | | ||||| |||||||    
T  39279735 ccaacaccgacacatataattacactgaattatttgattttctcatattattaacggtgttggcgtgtcag 39279665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 126 - 160
Target Start/End: Complemental strand, 40682022 - 40681988
Alignment:
Q  126 tacattgaattatgtgattttctcaaattattatc 160  Q
    ||||||||||||||| |||||||||||||||||||    
T  40682022 tacattgaattatgtcattttctcaaattattatc 40681988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 126 - 179
Target Start/End: Complemental strand, 896251 - 896198
Alignment:
Q  126 tacattgaattatgtgattttctcaaattattatcagggttggtgtgtcagtgt 179  Q
    ||||||||| ||||||||||||||||| ||||| ||| || || ||||||||||    
T  896251 tacattgaaatatgtgattttctcaaactattagcagtgtcggcgtgtcagtgt 896198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 121 - 158
Target Start/End: Complemental strand, 2331839 - 2331802
Alignment:
Q  121 ataactacattgaattatgtgattttctcaaattatta 158  Q
    |||| |||| ||||||||||||||||||||||||||||    
T  2331839 ataaatacactgaattatgtgattttctcaaattatta 2331802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 109 - 158
Target Start/End: Complemental strand, 5367249 - 5367200
Alignment:
Q  109 acaccgacatgtataactacattgaattatgtgattttctcaaattatta 158  Q
    |||||||||  ||||| |||| ||||||||||||||| ||||||||||||    
T  5367249 acaccgacacatataattacactgaattatgtgatttcctcaaattatta 5367200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 126 - 159
Target Start/End: Original strand, 19613632 - 19613665
Alignment:
Q  126 tacattgaattatgtgattttctcaaattattat 159  Q
    ||||||||||||||| ||||||||||||||||||    
T  19613632 tacattgaattatgttattttctcaaattattat 19613665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 126 - 179
Target Start/End: Complemental strand, 27084302 - 27084249
Alignment:
Q  126 tacattgaattatgtgattttctcaaattattatcagggttggtgtgtcagtgt 179  Q
    ||||||||||||| ||||||||||||||||||| ||| || || ||||| ||||    
T  27084302 tacattgaattatatgattttctcaaattattagcagtgtcggagtgtccgtgt 27084249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 121 - 222
Target Start/End: Complemental strand, 28412395 - 28412294
Alignment:
Q  121 ataactacattgaattatgtgattttctcaaattattatcagggttggtgtgtcagtgtttgtgttatgtctggtgtctctgtctgtatccgtgcttcat 220  Q
    |||| |||| |||||||||||||||| ||||||||||| | | ||||  |||| |||||  ||||  |||||||||||  ||||  ||| ||||||||||    
T  28412395 ataattacactgaattatgtgattttatcaaattattaacggtgttgacgtgttagtgtccgtgtcgtgtctggtgtccgtgtccatattcgtgcttcat 28412296  T
Q  221 ag 222  Q
    ||    
T  28412295 ag 28412294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 109 - 158
Target Start/End: Complemental strand, 44860377 - 44860328
Alignment:
Q  109 acaccgacatgtataactacattgaattatgtgattttctcaaattatta 158  Q
    |||||||||  ||||| |||| ||||||||| ||||||||||||||||||    
T  44860377 acaccgacacatataattacactgaattatgcgattttctcaaattatta 44860328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 107 - 179
Target Start/End: Complemental strand, 31808136 - 31808064
Alignment:
Q  107 caacaccgacatgtataactacattgaattatgtgattttctcaaattattatcagggttggtgtgtcagtgt 179  Q
    |||||| ||||  ||||| |||| |||||||||||||||| | ||||||||| | | || |||||||||||||    
T  31808136 caacactgacacatataattacactgaattatgtgattttgttaaattattagcggtgtcggtgtgtcagtgt 31808064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 28)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 109 - 177
Target Start/End: Complemental strand, 6326754 - 6326686
Alignment:
Q  109 acaccgacatgtataactacattgaattatgtgattttctcaaattattatcagggttggtgtgtcagt 177  Q
    |||||||||| ||||| |||||| | |||| ||||||| | ||||||||||||||||||||||||||||    
T  6326754 acaccgacatatataattacatttatttatatgatttttttaaattattatcagggttggtgtgtcagt 6326686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 109 - 185
Target Start/End: Complemental strand, 20549848 - 20549772
Alignment:
Q  109 acaccgacatgtataactacattgaattatgtgattttctcaaattattatcagggttggtgtgtcagtgtttgtgt 185  Q
    |||||||||  ||||| |||| ||||||| |||||||||||||||||||| | | || ||||||||||||| |||||    
T  20549848 acaccgacacatataattacactgaattacgtgattttctcaaattattagcggtgtcggtgtgtcagtgtatgtgt 20549772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 126 - 224
Target Start/End: Complemental strand, 25481942 - 25481844
Alignment:
Q  126 tacattgaattatgtgattttctcaaattattatcagggttggtgtgtcagtgtttgtgttatgtctggtgtctctgtctgtatccgtgcttcatagat 224  Q
    |||| |||||||||||||||| ||||||||||| | | || || |||||| |||   |||| |||| | ||||  ||||||||||||||||||||||||    
T  25481942 tacactgaattatgtgattttttcaaattattagctgtgtcggcgtgtcattgtccatgttgtgtccgatgtccgtgtctgtatccgtgcttcatagat 25481844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 47 - 158
Target Start/End: Complemental strand, 21880271 - 21880160
Alignment:
Q  47 ctatgaagcacggacatttctctaaataagcatgtcctagtgtaggacatg-gtcggtttccaacaccgacatgtataactacattgaattatgtgattt 145  Q
    |||||||||||||||| |||||  | || || |||||| |||| ||||||| |||| | ||| |||||||||  | ||| |||| |||||||||| ||||    
T  21880271 ctatgaagcacggacacttctcggattaggcgtgtcctggtgtcggacatgtgtcg-tgtccgacaccgacacttgtaattacactgaattatgtaattt 21880173  T
Q  146 tctcaaattatta 158  Q
    |||||||||||||    
T  21880172 tctcaaattatta 21880160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 126 - 222
Target Start/End: Complemental strand, 30731077 - 30730981
Alignment:
Q  126 tacattgaattatgtgattttctcaaattattatcagggttggtgtgtcagtgtttgtgttatgtctggtgtctctgtctgtatccgtgcttcatag 222  Q
    |||| |||||||||||||||||||||||||||  | | || || ||| || ||| |||||  |||||||||||  |||| ||||| |||||||||||    
T  30731077 tacactgaattatgtgattttctcaaattattcgcggtgtcggcgtgccactgtatgtgtcgtgtctggtgtccgtgtccgtatctgtgcttcatag 30730981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 131 - 179
Target Start/End: Original strand, 45056925 - 45056973
Alignment:
Q  131 tgaattatgtgattttctcaaattattatcagggttggtgtgtcagtgt 179  Q
    |||||||||||||||||||||||||||| ||| ||||| ||||| ||||    
T  45056925 tgaattatgtgattttctcaaattattagcagtgttggagtgtccgtgt 45056973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 120 - 171
Target Start/End: Complemental strand, 12278881 - 12278830
Alignment:
Q  120 tataactacattgaattatgtgattttctcaaattattatcagggttggtgt 171  Q
    ||||| |||| |||||||||| ||||||| ||||||||||||| ||||||||    
T  12278881 tataattacactgaattatgtcattttcttaaattattatcagtgttggtgt 12278830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 101 - 160
Target Start/End: Complemental strand, 44021040 - 44020981
Alignment:
Q  101 ggtttccaacaccgacatgtataactacattgaattatgtgattttctcaaattattatc 160  Q
    |||||||||||||||||  |||   ||||||||||||||| ||||| |||||||||||||    
T  44021040 ggtttccaacaccgacagatatggttacattgaattatgtaattttttcaaattattatc 44020981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 126 - 161
Target Start/End: Original strand, 44172909 - 44172944
Alignment:
Q  126 tacattgaattatgtgattttctcaaattattatca 161  Q
    ||||||||||||||| ||||||||||||||||||||    
T  44172909 tacattgaattatgtcattttctcaaattattatca 44172944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 110 - 160
Target Start/End: Original strand, 3520345 - 3520395
Alignment:
Q  110 caccgacatgtataactacattgaattatgtgattttctcaaattattatc 160  Q
    ||||||||  ||||| ||||||||||||| |||||||||||||| ||||||    
T  3520345 caccgacacatataattacattgaattatatgattttctcaaatgattatc 3520395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 120 - 162
Target Start/End: Complemental strand, 16341542 - 16341500
Alignment:
Q  120 tataactacattgaattatgtgattttctcaaattattatcag 162  Q
    ||||| |||| | ||||||||||||||||||||||||||||||    
T  16341542 tataattacacttaattatgtgattttctcaaattattatcag 16341500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 120 - 222
Target Start/End: Original strand, 26329395 - 26329497
Alignment:
Q  120 tataactacattgaattatgtgattttctcaaattattatcagggttggtgtgtcagtgtttgtgttatgtctggtgtctctgtctgtatccgtgcttca 219  Q
    ||||| |||| |||||| |||| |||||||||||||||| |   || || |||||||||| |||||  ||||  |||||  ||||||||| |||||||||    
T  26329395 tataattacactgaattgtgtgtttttctcaaattattaacgatgtcggcgtgtcagtgtctgtgtcgtgtccagtgtccgtgtctgtattcgtgcttca 26329494  T
Q  220 tag 222  Q
    |||    
T  26329495 tag 26329497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 126 - 160
Target Start/End: Original strand, 38134425 - 38134459
Alignment:
Q  126 tacattgaattatgtgattttctcaaattattatc 160  Q
    ||||||||||||||| |||||||||||||||||||    
T  38134425 tacattgaattatgtcattttctcaaattattatc 38134459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 109 - 198
Target Start/End: Complemental strand, 598265 - 598176
Alignment:
Q  109 acaccgacatgtataactacattgaattatgtgattttctcaaattattatcagggttggtgtgtcagtgtttgtgttatgtctggtgtc 198  Q
    |||||||||  || || |||||| ||||| |||||||||| ||||||||| | | || | |||||||||||  |||| ||||||||||||    
T  598265 acaccgacacttacaattacatttaattacgtgattttcttaaattattagcggtgtcgatgtgtcagtgtccgtgtcatgtctggtgtc 598176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 121 - 158
Target Start/End: Complemental strand, 2424659 - 2424622
Alignment:
Q  121 ataactacattgaattatgtgattttctcaaattatta 158  Q
    |||| |||| ||||||||||||||||||||||||||||    
T  2424659 ataattacactgaattatgtgattttctcaaattatta 2424622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 109 - 158
Target Start/End: Complemental strand, 7438763 - 7438714
Alignment:
Q  109 acaccgacatgtataactacattgaattatgtgattttctcaaattatta 158  Q
    |||||||||  | ||| ||||||||||||||||||||| |||||||||||    
T  7438763 acaccgacacttgtaattacattgaattatgtgattttttcaaattatta 7438714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 121 - 158
Target Start/End: Complemental strand, 11700848 - 11700811
Alignment:
Q  121 ataactacattgaattatgtgattttctcaaattatta 158  Q
    |||| ||||||||||||||||||||| |||||||||||    
T  11700848 ataattacattgaattatgtgattttgtcaaattatta 11700811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 109 - 158
Target Start/End: Complemental strand, 19206107 - 19206058
Alignment:
Q  109 acaccgacatgtataactacattgaattatgtgattttctcaaattatta 158  Q
    |||||||||  ||||| || | ||||||||||||||||||||||||||||    
T  19206107 acaccgacacatataattataatgaattatgtgattttctcaaattatta 19206058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 109 - 158
Target Start/End: Complemental strand, 19992058 - 19992009
Alignment:
Q  109 acaccgacatgtataactacattgaattatgtgattttctcaaattatta 158  Q
    |||||||||  ||||| |||| |||| |||||||||||||||||||||||    
T  19992058 acaccgacacttataattacactgaaatatgtgattttctcaaattatta 19992009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 109 - 158
Target Start/End: Complemental strand, 24146873 - 24146824
Alignment:
Q  109 acaccgacatgtataactacattgaattatgtgattttctcaaattatta 158  Q
    |||||||||  ||||| || |||||||||||||||||||| |||||||||    
T  24146873 acaccgacacatataattatattgaattatgtgattttctaaaattatta 24146824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 121 - 158
Target Start/End: Original strand, 29787383 - 29787420
Alignment:
Q  121 ataactacattgaattatgtgattttctcaaattatta 158  Q
    |||| |||| ||||||||||||||||||||||||||||    
T  29787383 ataattacactgaattatgtgattttctcaaattatta 29787420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 126 - 179
Target Start/End: Complemental strand, 32308160 - 32308107
Alignment:
Q  126 tacattgaattatgtgattttctcaaattattatcagggttggtgtgtcagtgt 179  Q
    |||| |||||||||||||||||||||||||||| | | || || ||||||||||    
T  32308160 tacactgaattatgtgattttctcaaattattagcggtgtcggcgtgtcagtgt 32308107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 107 - 159
Target Start/End: Complemental strand, 15902881 - 15902829
Alignment:
Q  107 caacaccgacatgtataactacattgaattatgtgattttctcaaattattat 159  Q
    |||||||||||  ||||| |||| | |||||||||||||| ||||||||||||    
T  15902881 caacaccgacacatataattacactaaattatgtgattttatcaaattattat 15902829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 126 - 162
Target Start/End: Original strand, 21247755 - 21247791
Alignment:
Q  126 tacattgaattatgtgattttctcaaattattatcag 162  Q
    |||||||||||| || |||||||||||||||||||||    
T  21247755 tacattgaattacgtcattttctcaaattattatcag 21247791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 109 - 153
Target Start/End: Original strand, 22602712 - 22602756
Alignment:
Q  109 acaccgacatgtataactacattgaattatgtgattttctcaaat 153  Q
    |||||||||  ||||| |||| |||||||||||||||||||||||    
T  22602712 acaccgacacatataattacactgaattatgtgattttctcaaat 22602756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 109 - 185
Target Start/End: Complemental strand, 25791709 - 25791634
Alignment:
Q  109 acaccgacatgtataactacattgaattatgtgattttctcaaattattatcagggttggtgtgtcagtgtttgtgt 185  Q
    |||||||||  ||||||||||||| ||||||||| |||||||||| |||| | | || || |||||||||| |||||    
T  25791709 acaccgacacatataactacattg-attatgtgaatttctcaaataattagcggtgtcggcgtgtcagtgtctgtgt 25791634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 126 - 158
Target Start/End: Complemental strand, 35862004 - 35861972
Alignment:
Q  126 tacattgaattatgtgattttctcaaattatta 158  Q
    ||||||||||||||||||||| |||||||||||    
T  35862004 tacattgaattatgtgattttttcaaattatta 35861972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 126 - 162
Target Start/End: Complemental strand, 41360950 - 41360914
Alignment:
Q  126 tacattgaattatgtgattttctcaaattattatcag 162  Q
    ||||||||||||||| |||||||||||||| ||||||    
T  41360950 tacattgaattatgttattttctcaaattaatatcag 41360914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 29)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 111 - 158
Target Start/End: Complemental strand, 30098381 - 30098334
Alignment:
Q  111 accgacatgtataactacattgaattatgtgattttctcaaattatta 158  Q
    |||||||| ||||| |||||||||||||||||||||||||||||||||    
T  30098381 accgacatctataattacattgaattatgtgattttctcaaattatta 30098334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 109 - 158
Target Start/End: Original strand, 22423814 - 22423863
Alignment:
Q  109 acaccgacatgtataactacattgaattatgtgattttctcaaattatta 158  Q
    |||||||||| ||||| || ||||||||||||||||||||||||||||||    
T  22423814 acaccgacatatataattatattgaattatgtgattttctcaaattatta 22423863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 126 - 159
Target Start/End: Complemental strand, 9449509 - 9449476
Alignment:
Q  126 tacattgaattatgtgattttctcaaattattat 159  Q
    ||||||||||||||||||||||||||||||||||    
T  9449509 tacattgaattatgtgattttctcaaattattat 9449476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 105 - 158
Target Start/End: Original strand, 23012406 - 23012459
Alignment:
Q  105 tccaacaccgacatgtataactacattgaattatgtgattttctcaaattatta 158  Q
    |||||||||||||  ||||| |||||| |||||| |||||||||||||||||||    
T  23012406 tccaacaccgacacatataattacattaaattatatgattttctcaaattatta 23012459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 126 - 222
Target Start/End: Original strand, 24906320 - 24906416
Alignment:
Q  126 tacattgaattatgtgattttctcaaattattatcagggttggtgtgtcagtgtttgtgttatgtctggtgtctc-tgtctgtatccgtgcttcatag 222  Q
    |||| |||||||||| ||||| ||||||||||||| | ||||| ||||||||||| ||||  |||| |||| ||| |||||||||| ||| |||||||    
T  24906320 tacactgaattatgtcattttttcaaattattatctgtgttggcgtgtcagtgttcgtgtcgtgtccggtg-ctcgtgtctgtatcggtgtttcatag 24906416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 109 - 158
Target Start/End: Original strand, 28588676 - 28588725
Alignment:
Q  109 acaccgacatgtataactacattgaattatgtgattttctcaaattatta 158  Q
    |||||||||  ||||| |||| ||||||||||||||||||||||||||||    
T  28588676 acaccgacacctataattacactgaattatgtgattttctcaaattatta 28588725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 126 - 226
Target Start/End: Complemental strand, 39342494 - 39342396
Alignment:
Q  126 tacattgaattatgtgattttctcaaattattatcagggttggtgtgtcagtgtttgtgttatgtctggtgtctctgtctgtatccgtgcttcatagatg 225  Q
    ||||||||||||||| | ||| ||||||||||||| | ||||  ||||| ||||  ||||  |||||||||||| || || || ||||||||||||||||    
T  39342494 tacattgaattatgtcaatttttcaaattattatcggagttgacgtgtctgtgt--gtgtcgtgtctggtgtctgtggctatacccgtgcttcatagatg 39342397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 76 - 219
Target Start/End: Original strand, 30502357 - 30502500
Alignment:
Q  76 gcatgtcctagtgtaggacatg-gtcggtttccaacaccgacatgtataactacattgaattatgtgattttctcaaattattatcagggttggtgtgtc 174  Q
    |||||||| ||||| ||||||| |||| | ||| |||||||||  ||||| |||| ||||||| |||||||||||||||||||| | | ||| | || ||    
T  30502357 gcatgtcccagtgtcggacatgtgtcg-tgtccgacaccgacacatataattacactgaattaagtgattttctcaaattattagcggtgtttgggtttc 30502455  T
Q  175 agtgtttgtgttatgtctggtgtctctgtctgtatccgtgcttca 219  Q
    || || ||||   |||| ||||||  ||| |||||||||||||||    
T  30502456 agcgtatgtgacgtgtccggtgtccgtgtttgtatccgtgcttca 30502500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 76 - 219
Target Start/End: Original strand, 30542700 - 30542843
Alignment:
Q  76 gcatgtcctagtgtaggacatg-gtcggtttccaacaccgacatgtataactacattgaattatgtgattttctcaaattattatcagggttggtgtgtc 174  Q
    |||||||| ||||| ||||||| |||| | ||| |||||||||  ||||| |||| ||||||| |||||||||||||||||||| | | ||| | || ||    
T  30542700 gcatgtcccagtgtcggacatgtgtcg-tgtccgacaccgacacatataattacactgaattaagtgattttctcaaattattagcggtgtttgggtttc 30542798  T
Q  175 agtgtttgtgttatgtctggtgtctctgtctgtatccgtgcttca 219  Q
    || || ||||   |||| ||||||  ||| |||||||||||||||    
T  30542799 agcgtatgtgacgtgtccggtgtccgtgtttgtatccgtgcttca 30542843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 122 - 162
Target Start/End: Original strand, 32428941 - 32428981
Alignment:
Q  122 taactacattgaattatgtgattttctcaaattattatcag 162  Q
    ||||||||||||||||||| | |||||||||||||||||||    
T  32428941 taactacattgaattatgtcactttctcaaattattatcag 32428981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 120 - 224
Target Start/End: Original strand, 6471902 - 6471998
Alignment:
Q  120 tataactacattgaattatgtgattttctcaaattattatcagggttggtgtgtcagtgtttgtgttatgtctggtgtctctgtctgtatccgtgcttca 219  Q
    ||||| |||| ||||||||||||||||||||||||||||        |  ||||||||||  |||| ||||| ||| ||| |||||||| ||||||||||    
T  6471902 tataattacactgaattatgtgattttctcaaattatta--------gccgtgtcagtgtccgtgtcatgtccggtttctgtgtctgtaaccgtgcttca 6471993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 126 - 160
Target Start/End: Original strand, 11596474 - 11596508
Alignment:
Q  126 tacattgaattatgtgattttctcaaattattatc 160  Q
    ||||||||||||||| |||||||||||||||||||    
T  11596474 tacattgaattatgtcattttctcaaattattatc 11596508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 105 - 179
Target Start/End: Complemental strand, 17123109 - 17123035
Alignment:
Q  105 tccaacaccgacatgtataactacattgaattatgtgattttctcaaattattatcagggttggtgtgtcagtgt 179  Q
    |||||||||||||| ||||| |  | |  ||||||||||||||||||||||||| | | ||||| ||||||||||    
T  17123109 tccaacaccgacatatataattgtacttgattatgtgattttctcaaattattagcggtgttggcgtgtcagtgt 17123035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 108 - 222
Target Start/End: Original strand, 17177024 - 17177138
Alignment:
Q  108 aacaccgacatgtataactacattgaattatgtgattttctcaaattattatcagggttggtgtgtcagtgtttgtgttatgtctggtgtctctgtctgt 207  Q
    ||||||||||  | ||| |||| |||||| | ||||||| ||||||||||| | | ||||| || |||||||  | ||  | |||||||||| |||| ||    
T  17177024 aacaccgacacttgtaattacaatgaattttttgattttttcaaattattagctgtgttggcgtatcagtgtccgagtcgtatctggtgtctgtgtccgt 17177123  T
Q  208 atccgtgcttcatag 222  Q
    |||||||||||||||    
T  17177124 atccgtgcttcatag 17177138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 109 - 159
Target Start/End: Original strand, 17925174 - 17925224
Alignment:
Q  109 acaccgacatgtataactacattgaattatgtgattttctcaaattattat 159  Q
    |||||||||  ||| | ||||||||||||||||||||||| ||||||||||    
T  17925174 acaccgacacatattattacattgaattatgtgattttcttaaattattat 17925224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 126 - 160
Target Start/End: Original strand, 18607116 - 18607150
Alignment:
Q  126 tacattgaattatgtgattttctcaaattattatc 160  Q
    ||||||||||||||| |||||||||||||||||||    
T  18607116 tacattgaattatgttattttctcaaattattatc 18607150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 126 - 160
Target Start/End: Complemental strand, 28296368 - 28296334
Alignment:
Q  126 tacattgaattatgtgattttctcaaattattatc 160  Q
    ||||||||||||||| |||||||||||||||||||    
T  28296368 tacattgaattatgtcattttctcaaattattatc 28296334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 109 - 158
Target Start/End: Complemental strand, 3966560 - 3966511
Alignment:
Q  109 acaccgacatgtataactacattgaattatgtgattttctcaaattatta 158  Q
    |||||||||  ||||| |||| |||||| |||||||||||||||||||||    
T  3966560 acaccgacacatataattacactgaattgtgtgattttctcaaattatta 3966511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 121 - 222
Target Start/End: Complemental strand, 6770588 - 6770487
Alignment:
Q  121 ataactacattgaattatgtgattttctcaaattattatcagggttggtgtgtcagtgtttgtgttatgtctggtgtctctgtctgtatccgtgcttcat 220  Q
    |||| |||| |||||||||||||||||| |||||||||   | ||  ||||||||||||  |||| ||||  ||||||  | || |||||||||||||||    
T  6770588 ataagtacactgaattatgtgattttcttaaattattagttgtgtcagtgtgtcagtgtccgtgtcatgttcggtgtccgtatccgtatccgtgcttcat 6770489  T
Q  221 ag 222  Q
    ||    
T  6770488 ag 6770487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 109 - 210
Target Start/End: Original strand, 16203797 - 16203898
Alignment:
Q  109 acaccgacatgtataactacattgaattatgtgattttctcaaattattatcagggttggtgtgtcagtgtttgtgttatgtctggtgtctctgtctgta 208  Q
    |||||||||  ||||| |||| | ||||||| |||||||||||||||||| ||| || ||  ||| |||||  |||| ||||  ||||||| ||||||||    
T  16203797 acaccgacacatataattacactaaattatgagattttctcaaattattagcagtgtcggcatgttagtgtccgtgtcatgttcggtgtctgtgtctgta 16203896  T
Q  209 tc 210  Q
    ||    
T  16203897 tc 16203898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 133 - 222
Target Start/End: Complemental strand, 19579734 - 19579645
Alignment:
Q  133 aattatgtgattttctcaaattattatcagggttggtgtgtcagtgtttgtgttatgtctggtgtctctgtctgtatccgtgcttcatag 222  Q
    |||||||||||||||||||||||||| | | || || || |||||||  ||||| | || ||||||  |||  |||||||||||||||||    
T  19579734 aattatgtgattttctcaaattattagctgtgtcggcgtatcagtgtccgtgttgtatccggtgtcggtgtacgtatccgtgcttcatag 19579645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 126 - 179
Target Start/End: Complemental strand, 31084363 - 31084310
Alignment:
Q  126 tacattgaattatgtgattttctcaaattattatcagggttggtgtgtcagtgt 179  Q
    ||||||||||||||||||||| ||||||||||| | | || || ||||||||||    
T  31084363 tacattgaattatgtgattttttcaaattattagctgtgtcggcgtgtcagtgt 31084310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 107 - 160
Target Start/End: Original strand, 38749563 - 38749616
Alignment:
Q  107 caacaccgacatgtataactacattgaattatgtgattttctcaaattattatc 160  Q
    ||||||| |||  ||||| ||||||||||||||| ||||| |||||||||||||    
T  38749563 caacaccaacacatataattacattgaattatgtcattttttcaaattattatc 38749616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 126 - 175
Target Start/End: Original strand, 43208293 - 43208342
Alignment:
Q  126 tacattgaattatgtgattttctcaaattattatcagggttggtgtgtca 175  Q
    ||||||||||||||| |||||||||||||| |||| | |||| |||||||    
T  43208293 tacattgaattatgtcattttctcaaattactatcggtgttgatgtgtca 43208342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 120 - 160
Target Start/End: Original strand, 5467991 - 5468031
Alignment:
Q  120 tataactacattgaattatgtgattttctcaaattattatc 160  Q
    ||||| |||| |||||||||||||||| |||||||||||||    
T  5467991 tataattacactgaattatgtgattttatcaaattattatc 5468031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 120 - 180
Target Start/End: Original strand, 7997179 - 7997239
Alignment:
Q  120 tataactacattgaattatgtgattttctcaaattattatcagggttggtgtgtcagtgtt 180  Q
    ||||| |||| || ||||| | ||||||||||||||||||| | ||||| |||||||||||    
T  7997179 tataattacactgtattatatcattttctcaaattattatccgtgttggcgtgtcagtgtt 7997239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 110 - 158
Target Start/End: Original strand, 17593725 - 17593773
Alignment:
Q  110 caccgacatgtataactacattgaattatgtgattttctcaaattatta 158  Q
    |||| |||| ||||| |||| ||||||| ||||||||||||||||||||    
T  17593725 caccaacatatataattacactgaattacgtgattttctcaaattatta 17593773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #28
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 128 - 160
Target Start/End: Original strand, 19737503 - 19737535
Alignment:
Q  128 cattgaattatgtgattttctcaaattattatc 160  Q
    ||||||||||||| |||||||||||||||||||    
T  19737503 cattgaattatgtaattttctcaaattattatc 19737535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #29
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 120 - 160
Target Start/End: Original strand, 32630748 - 32630788
Alignment:
Q  120 tataactacattgaattatgtgattttctcaaattattatc 160  Q
    ||||| ||||||||||||| | |||||||||||||||||||    
T  32630748 tataattacattgaattatataattttctcaaattattatc 32630788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 26)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 109 - 224
Target Start/End: Complemental strand, 25093559 - 25093444
Alignment:
Q  109 acaccgacatgtataactacattgaattatgtgattttctcaaattattatcagggttggtgtgtcagtgtttgtgttatgtctggtgtctctgtctgta 208  Q
    |||||||||  ||||| |||| |||||| |||||||||||||||| |||| ||| || || |||| |||||  ||||  |||| ||||||| ||| ||||    
T  25093559 acaccgacacatataattacactgaattgtgtgattttctcaaatcattaacagtgtcggcgtgttagtgtcagtgtcgtgtccggtgtctgtgtttgta 25093460  T
Q  209 tccgtgcttcatagat 224  Q
    ||||| ||||||||||    
T  25093459 tccgtacttcatagat 25093444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 129 - 207
Target Start/End: Complemental strand, 13807206 - 13807128
Alignment:
Q  129 attgaattatgtgattttctcaaattattatcagggttggtgtgtcagtgtttgtgttatgtctggtgtctctgtctgt 207  Q
    |||||||||||||||||||||||||| ||||||| ||||| |||| ||| || |||| |||||  |||||| |||||||    
T  13807206 attgaattatgtgattttctcaaattgttatcagtgttggcgtgttagttttcgtgtcatgtccagtgtctgtgtctgt 13807128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 120 - 222
Target Start/End: Original strand, 24205054 - 24205156
Alignment:
Q  120 tataactacattgaattatgtgattttctcaaattattatcagggttggtgtgtcagtgtttgtgttatgtctggtgtctctgtctgtatccgtgcttca 219  Q
    ||||| |||| || ||||||| ||||||||||||||||||| | || || ||||||||||  ||||  |||| ||||||  ||||||| |||||||||||    
T  24205054 tataattacactgtattatgtcattttctcaaattattatccgtgtcggcgtgtcagtgtccgtgtcgtgtccggtgtccgtgtctgtgtccgtgcttca 24205153  T
Q  220 tag 222  Q
    |||    
T  24205154 tag 24205156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 74 - 160
Target Start/End: Original strand, 15304569 - 15304656
Alignment:
Q  74 aagcatgtcctagtgtaggacatg-gtcggtttccaacaccgacatgtataactacattgaattatgtgattttctcaaattattatc 160  Q
    ||||||||| |||||| ||||| | |||||| ||| |||||||||  ||||||||||||||| |||||  |||||| |||||||||||    
T  15304569 aagcatgtcatagtgttggacacgcgtcggtatccgacaccgacacatataactacattgaaatatgttgttttctaaaattattatc 15304656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 120 - 158
Target Start/End: Complemental strand, 9624687 - 9624649
Alignment:
Q  120 tataactacattgaattatgtgattttctcaaattatta 158  Q
    ||||| |||||||||||||||||||||||||||||||||    
T  9624687 tataattacattgaattatgtgattttctcaaattatta 9624649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 120 - 197
Target Start/End: Original strand, 25652044 - 25652121
Alignment:
Q  120 tataactacattgaattatgtgattttctcaaattattatcagggttggtgtgtcagtgtttgtgttatgtctggtgt 197  Q
    |||||||||| |||||||| | ||||||||||||||||||| | ||||| |||| |||||  ||||  ||||||||||    
T  25652044 tataactacactgaattatatcattttctcaaattattatccgtgttggcgtgttagtgtccgtgtcgtgtctggtgt 25652121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 122 - 198
Target Start/End: Complemental strand, 11610565 - 11610489
Alignment:
Q  122 taactacattgaattatgtgattttctcaaattattatcagggttggtgtgtcagtgtttgtgttatgtctggtgtc 198  Q
    |||||||| |||||||||||||||| | ||||||||| | | ||||| |||||||| | |||||| |||||| ||||    
T  11610565 taactacactgaattatgtgatttttttaaattattagcggtgttggcgtgtcagtatctgtgttgtgtctgatgtc 11610489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 126 - 221
Target Start/End: Complemental strand, 4469890 - 4469795
Alignment:
Q  126 tacattgaattatgtgattttctcaaattattatcagggttggtgtgtcagtgtttgtgttatgtctggtgtctctgtctgtatccgtgcttcata 221  Q
    |||| |||||||||||||||||| ||||||||  | |  |||| |||||| ||| |||||  |||  ||||| | |||||||||||||||||||||    
T  4469890 tacactgaattatgtgattttcttaaattattggcggtattggcgtgtcaatgtctgtgtcttgttaggtgtttgtgtctgtatccgtgcttcata 4469795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 131 - 218
Target Start/End: Complemental strand, 11658850 - 11658764
Alignment:
Q  131 tgaattatgtgattttctcaaattattatcagggttggtgtgtcagtgtttgtgttatgtctggtgtctctgtctgtatccgtgcttc 218  Q
    ||||||||| |||||||||||||||||| |   |||||||||||||||| |||||  ||||  |||||| |||  |||||||||||||    
T  11658850 tgaattatgcgattttctcaaattattaacgatgttggtgtgtcagtgtctgtgtcgtgtc-cgtgtctgtgttcgtatccgtgcttc 11658764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 120 - 198
Target Start/End: Original strand, 4466613 - 4466691
Alignment:
Q  120 tataactacattgaattatgtgattttctcaaattattatcagggttggtgtgtcagtgtttgtgttatgtctggtgtc 198  Q
    |||| ||||| |||||||| ||||||||| ||||||||| | | || || ||||||||||| |||| ||||| ||||||    
T  4466613 tatagctacactgaattatatgattttcttaaattattaccggtgtcggagtgtcagtgttcgtgtcatgtccggtgtc 4466691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 109 - 179
Target Start/End: Complemental strand, 39002089 - 39002019
Alignment:
Q  109 acaccgacatgtataactacattgaattatgtgattttctcaaattattatcagggttggtgtgtcagtgt 179  Q
    |||| ||||| ||||| ||||||||||||||||||||| |||||||  ||||   || |||||||||||||    
T  39002089 acactgacatatataattacattgaattatgtgattttttcaaattcctatccatgtcggtgtgtcagtgt 39002019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 126 - 160
Target Start/End: Complemental strand, 52369815 - 52369781
Alignment:
Q  126 tacattgaattatgtgattttctcaaattattatc 160  Q
    ||||||||||||||| |||||||||||||||||||    
T  52369815 tacattgaattatgtaattttctcaaattattatc 52369781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 109 - 158
Target Start/End: Original strand, 7614417 - 7614466
Alignment:
Q  109 acaccgacatgtataactacattgaattatgtgattttctcaaattatta 158  Q
    |||||||||| ||||| || | |||||||||||||||||| |||||||||    
T  7614417 acaccgacatatataattatactgaattatgtgattttcttaaattatta 7614466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 109 - 158
Target Start/End: Complemental strand, 7928507 - 7928458
Alignment:
Q  109 acaccgacatgtataactacattgaattatgtgattttctcaaattatta 158  Q
    |||||||||  ||||| |||| |||||||||||||||| |||||||||||    
T  7928507 acaccgacacatataattacactgaattatgtgattttttcaaattatta 7928458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 109 - 158
Target Start/End: Complemental strand, 8383314 - 8383265
Alignment:
Q  109 acaccgacatgtataactacattgaattatgtgattttctcaaattatta 158  Q
    |||||||||  ||||| |||| |||||||| |||||||||||||||||||    
T  8383314 acaccgacacttataattacactgaattatatgattttctcaaattatta 8383265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 121 - 158
Target Start/End: Complemental strand, 11252023 - 11251986
Alignment:
Q  121 ataactacattgaattatgtgattttctcaaattatta 158  Q
    |||| |||| ||||||||||||||||||||||||||||    
T  11252023 ataattacactgaattatgtgattttctcaaattatta 11251986  T

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Target: chr3; HSP #17
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 134 - 199
Target Start/End: Original strand, 12674528 - 12674593
Alignment:
Q  134 attatgtgattttctcaaattattatcagggttggtgtgtcagtgtttgtgttatgtctggtgtct 199  Q
    ||||| ||||||||||||||||||| ||| || ||||||||| |||  ||||  ||||||||||||    
T  12674528 attatttgattttctcaaattattagcagtgtcggtgtgtcaatgtccgtgtcgtgtctggtgtct 12674593  T

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Target: chr3; HSP #18
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 126 - 155
Target Start/End: Complemental strand, 12704085 - 12704056
Alignment:
Q  126 tacattgaattatgtgattttctcaaatta 155  Q
    ||||||||||||||||||||||||||||||    
T  12704085 tacattgaattatgtgattttctcaaatta 12704056  T

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Target: chr3; HSP #19
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 109 - 162
Target Start/End: Complemental strand, 20691376 - 20691323
Alignment:
Q  109 acaccgacatgtataactacattgaattatgtgattttctcaaattattatcag 162  Q
    |||||||||  ||| | |||| |||||||||| |||||||||||||||||||||    
T  20691376 acaccgacacatatgattacactgaattatgtcattttctcaaattattatcag 20691323  T

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Target: chr3; HSP #20
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 105 - 158
Target Start/End: Original strand, 24633399 - 24633452
Alignment:
Q  105 tccaacaccgacatgtataactacattgaattatgtgattttctcaaattatta 158  Q
    |||||||||||||  ||||| |||||||||||| ||||||||  ||||||||||    
T  24633399 tccaacaccgacacatataattacattgaattacgtgatttttccaaattatta 24633452  T

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Target: chr3; HSP #21
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 109 - 158
Target Start/End: Complemental strand, 38731275 - 38731226
Alignment:
Q  109 acaccgacatgtataactacattgaattatgtgattttctcaaattatta 158  Q
    |||||||||  |||||||||| |||||||||||||||| | |||||||||    
T  38731275 acaccgacacatataactacactgaattatgtgattttttaaaattatta 38731226  T

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Target: chr3; HSP #22
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 126 - 159
Target Start/End: Original strand, 46191364 - 46191397
Alignment:
Q  126 tacattgaattatgtgattttctcaaattattat 159  Q
    |||||| |||||||||||||||||||||||||||    
T  46191364 tacatttaattatgtgattttctcaaattattat 46191397  T

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Target: chr3; HSP #23
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 109 - 158
Target Start/End: Complemental strand, 47362619 - 47362570
Alignment:
Q  109 acaccgacatgtataactacattgaattatgtgattttctcaaattatta 158  Q
    |||| ||||||||||| |||||| |||||||| ||||||| |||||||||    
T  47362619 acactgacatgtataattacattcaattatgtaattttcttaaattatta 47362570  T

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Target: chr3; HSP #24
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 126 - 158
Target Start/End: Complemental strand, 5339148 - 5339116
Alignment:
Q  126 tacattgaattatgtgattttctcaaattatta 158  Q
    |||||| ||||||||||||||||||||||||||    
T  5339148 tacattaaattatgtgattttctcaaattatta 5339116  T

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Target: chr3; HSP #25
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 128 - 160
Target Start/End: Original strand, 9210846 - 9210878
Alignment:
Q  128 cattgaattatgtgattttctcaaattattatc 160  Q
    ||||||||||||| |||||||||||||||||||    
T  9210846 cattgaattatgtcattttctcaaattattatc 9210878  T

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Target: chr3; HSP #26
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 107 - 179
Target Start/End: Original strand, 17005619 - 17005691
Alignment:
Q  107 caacaccgacatgtataactacattgaattatgtgattttctcaaattattatcagggttggtgtgtcagtgt 179  Q
    |||||||||||  ||||| |||| |||||||| ||||||| |||||||||||   | ||||||| ||||||||    
T  17005619 caacaccgacacttataattacactgaattatatgattttatcaaattattagtggtgttggtgagtcagtgt 17005691  T

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Target: scaffold0007 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 120 - 222
Target Start/End: Original strand, 225281 - 225383
Alignment:
Q  120 tataactacattgaattatgtgattttctcaaattattatcagggttggtgtgtcagtgtttgtgttatgtctggtgtctctgtctgtatccgtgcttca 219  Q
    ||||| ||||||| ||||||| ||||||||||||||||||| | || || ||||||||||  ||||  |||| ||||||  ||||||| |||||| ||||    
T  225281 tataattacattgtattatgtcattttctcaaattattatctgtgtcggcgtgtcagtgtccgtgtcgtgtccggtgtccgtgtctgtgtccgtgtttca 225380  T
Q  220 tag 222  Q
    |||    
T  225381 tag 225383  T

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Target: scaffold0022 (Bit Score: 37; Significance: 0.000000000006; HSPs: 2)
Name: scaffold0022
Description:

Target: scaffold0022; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 113 - 185
Target Start/End: Complemental strand, 90896 - 90824
Alignment:
Q  113 cgacatgtataactacattgaattatgtgattttctcaaattattatcagggttggtgtgtcagtgtttgtgt 185  Q
    |||||| ||||| |||| |||||||| |||||||||||||||||||   | |||||||||||||||| |||||    
T  90896 cgacatatataattacactgaattatatgattttctcaaattattaatggtgttggtgtgtcagtgtctgtgt 90824  T

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Target: scaffold0022; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 120 - 160
Target Start/End: Complemental strand, 99939 - 99899
Alignment:
Q  120 tataactacattgaattatgtgattttctcaaattattatc 160  Q
    ||||| ||||||||||||||| ||||||| |||||||||||    
T  99939 tataattacattgaattatgttattttctaaaattattatc 99899  T

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Target: scaffold0085 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: scaffold0085
Description:

Target: scaffold0085; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 120 - 158
Target Start/End: Complemental strand, 26439 - 26401
Alignment:
Q  120 tataactacattgaattatgtgattttctcaaattatta 158  Q
    |||||| ||||||||||||||||||||||||||||||||    
T  26439 tataacgacattgaattatgtgattttctcaaattatta 26401  T

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Target: scaffold0027 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: scaffold0027
Description:

Target: scaffold0027; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 109 - 222
Target Start/End: Complemental strand, 46739 - 46626
Alignment:
Q  109 acaccgacatgtataactacattgaattatgtgattttctcaaattattatcagggttggtgtgtcagtgtttgtgttatgtctggtgtctctgtctgta 208  Q
    |||||||||| | ||| |||| |||||||||||||||| ||||||||||| | | || || |||||| |||  ||||  |||| | ||||  |||| |||    
T  46739 acaccgacatttgtaattacactgaattatgtgattttttcaaattattaactgtgtcggcgtgtcattgtccgtgtcgtgtccgatgtccgtgtccgta 46640  T
Q  209 tccgtgcttcatag 222  Q
    ||||||||||||||    
T  46639 tccgtgcttcatag 46626  T

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Target: scaffold0020 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0020
Description:

Target: scaffold0020; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 109 - 173
Target Start/End: Original strand, 135314 - 135378
Alignment:
Q  109 acaccgacatgtataactacattgaattatgtgattttctcaaattattatcagggttggtgtgt 173  Q
    |||||||||  ||||| ||||  ||||||||||||||||||||||||||| ||| || |||||||    
T  135314 acaccgacacatataattacacagaattatgtgattttctcaaattattagcagtgtcggtgtgt 135378  T

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Target: scaffold0110 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: scaffold0110
Description:

Target: scaffold0110; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 107 - 158
Target Start/End: Complemental strand, 28909 - 28858
Alignment:
Q  107 caacaccgacatgtataactacattgaattatgtgattttctcaaattatta 158  Q
    |||||||||||  ||||| |||||||||||||| |||||||| |||||||||    
T  28909 caacaccgacacatataattacattgaattatgcgattttcttaaattatta 28858  T

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Target: scaffold0044 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: scaffold0044
Description:

Target: scaffold0044; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 110 - 157
Target Start/End: Complemental strand, 53236 - 53189
Alignment:
Q  110 caccgacatgtataactacattgaattatgtgattttctcaaattatt 157  Q
    ||||||||  ||||| |||| |||||||||||||||||||||||||||    
T  53236 caccgacacttataattacactgaattatgtgattttctcaaattatt 53189  T

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Target: scaffold0571 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0571
Description:

Target: scaffold0571; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 128 - 162
Target Start/End: Complemental strand, 7728 - 7694
Alignment:
Q  128 cattgaattatgtgattttctcaaattattatcag 162  Q
    ||||||||||||| |||||||||||||||||||||    
T  7728 cattgaattatgtcattttctcaaattattatcag 7694  T

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Target: scaffold0154 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0154
Description:

Target: scaffold0154; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 173 - 223
Target Start/End: Complemental strand, 13444 - 13394
Alignment:
Q  173 tcagtgtttgtgttatgtctggtgtctctgtctgtatccgtgcttcataga 223  Q
    ||||||||  ||| ||||||||||||  |||||||||||||||||||||||    
T  13444 tcagtgttcatgtgatgtctggtgtcggtgtctgtatccgtgcttcataga 13394  T

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Target: scaffold0036 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: scaffold0036
Description:

Target: scaffold0036; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 109 - 158
Target Start/End: Original strand, 9749 - 9798
Alignment:
Q  109 acaccgacatgtataactacattgaattatgtgattttctcaaattatta 158  Q
    |||||||||  ||||| |||| ||||||| ||||||||||||||||||||    
T  9749 acaccgacacatataattacactgaattaagtgattttctcaaattatta 9798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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