View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15856_low_29 (Length: 255)

Name: NF15856_low_29
Description: NF15856
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15856_low_29
NF15856_low_29
[»] chr2 (13 HSPs)
chr2 (19-254)||(32786268-32786505)
chr2 (86-254)||(32799386-32799556)
chr2 (93-254)||(32310767-32310930)
chr2 (93-254)||(32306637-32306800)
chr2 (102-254)||(32792734-32792888)
chr2 (88-254)||(32563886-32564053)
chr2 (105-254)||(28213918-28214069)
chr2 (136-254)||(32813598-32813716)
chr2 (134-254)||(28222215-28222335)
chr2 (171-254)||(28177624-28177707)
chr2 (177-254)||(28158955-28159032)
chr2 (173-254)||(28171795-28171876)
chr2 (214-254)||(28161758-28161798)


Alignment Details
Target: chr2 (Bit Score: 219; Significance: 1e-120; HSPs: 13)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 19 - 254
Target Start/End: Original strand, 32786268 - 32786505
Alignment:
Q  19 ctactggcttaaactaaaagaactaactataacttgtcacaggctttacttttcaaataaaaactaactataatagctgtcactttacatggccaaaacc 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32786268 ctactggcttaaactaaaagaactaactataacttgtcacaggctttacttttcaaataaaaactaactataatagctgtcactttacatggccaaaacc 32786367  T
Q  119 accctaaaatatgtg--agaaacttacatagcaagagaacaaatttgctaaaccagaatgaaatatatgaaccgactcacttaagagcttacaagacggg 216  Q
    |||||||||||||||  |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  32786368 accctaaaatatgtgtgagaaacttacataggaagagaacaaatttgctaaaccagaatgaaatatatgaaccgactcacttaagagcttacaagatggg 32786467  T
Q  217 agcaattcagacgaacctgaccttgatttccagtcaaa 254  Q
    ||||||||||||||||||||||||||||||||||||||    
T  32786468 agcaattcagacgaacctgaccttgatttccagtcaaa 32786505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 86 - 254
Target Start/End: Original strand, 32799386 - 32799556
Alignment:
Q  86 ctataatagctgtcactttacatggccaaaaccaccctaaaatatgt--gagaaacttacatagcaagagaacaaatttgctaaaccagaatgaaatata 183  Q
    |||||||||||||||||||||||||||||||| |||||||||| |||  ||||||||||||||| ||||||||||||||||||||| |||||||||||||    
T  32799386 ctataatagctgtcactttacatggccaaaactaccctaaaatgtgtatgagaaacttacataggaagagaacaaatttgctaaactagaatgaaatata 32799485  T
Q  184 tgaaccgactcacttaagagcttacaagacgggagcaattcagacgaacctgaccttgatttccagtcaaa 254  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32799486 tgaaccaactcacttaagagcttacaagacgggagcaattcagacgaacctgaccttgatttccagtcaaa 32799556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 129; E-Value: 7e-67
Query Start/End: Original strand, 93 - 254
Target Start/End: Complemental strand, 32310930 - 32310767
Alignment:
Q  93 agctgtcactttacatggccaaaaccaccctaaaatatgt--gagaaacttacatagcaagagaacaaatttgctaaaccagaatgaaatatatgaaccg 190  Q
    ||||||||||||||||||||||||| ||||| |||| |||  ||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||     
T  32310930 agctgtcactttacatggccaaaactaccctcaaatgtgtatgagaaacttacataggaagagaacaaatttgctaaactagaatgaaatatatgaacca 32310831  T
Q  191 actcacttaagagcttacaagacgggagcaattcagacgaacctgaccttgatttccagtcaaa 254  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32310830 actcacttaagagcttacaagacgggagcaattcagacgaacctgaccttgatttccagtcaaa 32310767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 93 - 254
Target Start/End: Complemental strand, 32306800 - 32306637
Alignment:
Q  93 agctgtcactttacatggccaaaaccaccctaaaatatgt--gagaaacttacatagcaagagaacaaatttgctaaaccagaatgaaatatatgaaccg 190  Q
    |||||| |||||||||||||||||| |||||||||| |||  ||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||     
T  32306800 agctgtaactttacatggccaaaactaccctaaaatgtgtatgagaaacttacataggaagagaacaaatttgctaaactagaatgaaatatatgaacca 32306701  T
Q  191 actcacttaagagcttacaagacgggagcaattcagacgaacctgaccttgatttccagtcaaa 254  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32306700 actcacttaagagtttacaagacgggagcaattcagacgaacctgaccttgatttccagtcaaa 32306637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 102 - 254
Target Start/End: Original strand, 32792734 - 32792888
Alignment:
Q  102 tttacatggccaaaaccaccctaaaatatgt--gagaaacttacatagcaagagaacaaatttgctaaaccagaatgaaatatatgaaccgactcactta 199  Q
    |||||||||||||||| ||||| |||| |||  ||||||||||||||| ||||||||||||||| ||||| ||||||||||||||||||| |||||||||    
T  32792734 tttacatggccaaaactaccctcaaatgtgtatgagaaacttacataggaagagaacaaatttgataaactagaatgaaatatatgaaccaactcactta 32792833  T
Q  200 agagcttacaagacgggagcaattcagacgaacctgaccttgatttccagtcaaa 254  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32792834 agagcttacaagacgggagcaattcagacgaacctgaccttgatttccagtcaaa 32792888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 88 - 254
Target Start/End: Original strand, 32563886 - 32564053
Alignment:
Q  88 ataatagctgtcactttacatggccaaaaccaccctaaaatatgt--gagaaacttacatagcaagagaacaaatttgctaaaccagaatgaaatatatg 185  Q
    |||| ||||||||||||||||||||||||| ||||| |||| |||  ||||||||||||| | || | ||||||||| ||||||||||||||||||||||    
T  32563886 ataacagctgtcactttacatggccaaaactaccctcaaatgtgtatgagaaacttacattggaaaa-aacaaattttctaaaccagaatgaaatatatg 32563984  T
Q  186 aaccgactcacttaagagcttacaagacgggagcaattcagacgaacctgaccttgatttccagtcaaa 254  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  32563985 aaccaactcacttaagagcttacaagacgggagcaattcagacgaacctgaccttgatttcaagtcaaa 32564053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 105 - 254
Target Start/End: Original strand, 28213918 - 28214069
Alignment:
Q  105 acatggccaaaaccaccctaaaatatgtg--agaaacttacatagcaagagaacaaatttgctaaaccagaatgaaatatatgaaccgactcacttaaga 202  Q
    ||||||||||||| ||||| |||| ||||  |||||||||||||  ||||||||||||||||||||||||||||||||||||||||| |||| |||||||    
T  28213918 acatggccaaaactaccctcaaatgtgtgtgagaaacttacataagaagagaacaaatttgctaaaccagaatgaaatatatgaaccaactcgcttaaga 28214017  T
Q  203 gcttacaagacgggagcaattcagacgaacctgaccttgatttccagtcaaa 254  Q
    |||||| | |||||||||||||||||||||||||||||||||||||||||||    
T  28214018 gcttacgacacgggagcaattcagacgaacctgaccttgatttccagtcaaa 28214069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 99; E-Value: 6e-49
Query Start/End: Original strand, 136 - 254
Target Start/End: Original strand, 32813598 - 32813716
Alignment:
Q  136 aaacttacatagcaagagaacaaatttgctaaaccagaatgaaatatatgaaccgactcacttaagagcttacaagacgggagcaattcagacgaacctg 235  Q
    |||||| ||||| |||||||||||||| ||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  32813598 aaacttgcataggaagagaacaaattttctaaaccagaatgaattatatgaaccaactcacttaagagcttacaagacgggagcaattcagacgaacctg 32813697  T
Q  236 accttgatttccagtcaaa 254  Q
    |||||||||||||||||||    
T  32813698 accttgatttccagtcaaa 32813716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 134 - 254
Target Start/End: Complemental strand, 28222335 - 28222215
Alignment:
Q  134 agaaacttacatagcaagagaacaaatttgctaaaccagaatgaaatatatgaaccgactcacttaagagcttacaagacgggagcaattcagacgaacc 233  Q
    |||||||||||||| |||||||| |||||||||| ||||||||||||||||||||| |||| ||||||||||||| | ||||||||||||||||||||||    
T  28222335 agaaacttacataggaagagaaccaatttgctaagccagaatgaaatatatgaaccaactcgcttaagagcttacgacacgggagcaattcagacgaacc 28222236  T
Q  234 tgaccttgatttccagtcaaa 254  Q
    |||||||||||||||||||||    
T  28222235 tgaccttgatttccagtcaaa 28222215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 171 - 254
Target Start/End: Complemental strand, 28177707 - 28177624
Alignment:
Q  171 agaatgaaatatatgaaccgactcacttaagagcttacaagacgggagcaattcagacgaacctgaccttgatttccagtcaaa 254  Q
    ||||| |||||||| |||| ||||| |||||| |||| ||   |||| ||||||||||||||||||||||||||||||||||||    
T  28177707 agaattaaatatatcaaccaactcagttaagaacttataatttgggaacaattcagacgaacctgaccttgatttccagtcaaa 28177624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 177 - 254
Target Start/End: Complemental strand, 28159032 - 28158955
Alignment:
Q  177 aaatatatgaaccgactcacttaagagcttacaagacgggagcaattcagacgaacctgaccttgatttccagtcaaa 254  Q
    |||||||| |||| ||||| |||||| |||| ||    ||| |||||||||||||||||||||| |||||||||||||    
T  28159032 aaatatatcaaccaactcagttaagaacttataatttcggaacaattcagacgaacctgacctttatttccagtcaaa 28158955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 173 - 254
Target Start/End: Complemental strand, 28171876 - 28171795
Alignment:
Q  173 aatgaaatatatgaaccgactcacttaagagcttacaagacgggagcaattcagacgaacctgaccttgatttccagtcaaa 254  Q
    |||||||||||| |||| || || || ||| |||| ||   |||| ||||||||| ||||||||||||||||||||||||||    
T  28171876 aatgaaatatatcaaccaacgcagttcagaacttataatttgggaacaattcagatgaacctgaccttgatttccagtcaaa 28171795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 214 - 254
Target Start/End: Complemental strand, 28161798 - 28161758
Alignment:
Q  214 gggagcaattcagacgaacctgaccttgatttccagtcaaa 254  Q
    |||| |||||||||| |||||||||||||||||||||||||    
T  28161798 gggaacaattcagacaaacctgaccttgatttccagtcaaa 28161758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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