View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15856_low_3 (Length: 540)
Name: NF15856_low_3
Description: NF15856
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15856_low_3 |
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| [»] scaffold0202 (1 HSPs) |
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| [»] scaffold0016 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 79; Significance: 1e-36; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 81 - 175
Target Start/End: Original strand, 31093208 - 31093302
Alignment:
| Q |
81 |
ttaaaatgctttcccggaactggatgagatcaaaatcatcggggtcaggatatgcaatatcacattagtggactaaccctctagcttgtttagga |
175 |
Q |
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| T |
31093208 |
ttaaaatgctttcccggaactggatgagatcaaaatcattgggatatggatatgcaatatcacattagtggactaaccctctagcttgtttagga |
31093302 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 355 - 489
Target Start/End: Complemental strand, 31074093 - 31073966
Alignment:
| Q |
355 |
ttttgtgcctagtgaaaaaatgtatgatggagtcccataacaccacttagttcatacagttttgtcatgtaatgtactatgacctaaataatttaaccac |
454 |
Q |
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| T |
31074093 |
ttttgtgggtagtgaagtaatgtatgatggagtcccataacaccacttagttcattcaattttgtcttataatgtactatggccaaaataatttaaccac |
31073994 |
T |
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| Q |
455 |
cctcttcccccttcatcatactttaaattattcca |
489 |
Q |
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| T |
31073993 |
cct-------cttcatcatactttaaattattcca |
31073966 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 84 - 176
Target Start/End: Complemental strand, 31034026 - 31033934
Alignment:
| Q |
84 |
aaatgctttcccggaactggatgagatcaaaatcatcggggtcaggatatgcaatatcacattagtggactaaccctctagcttgtttaggag |
176 |
Q |
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| T |
31034026 |
aaatgctttcctgaaactggataaggtcataatcatcagggtttggatattcaatatcgaagtcgtggactaaccctttaccttttttaggag |
31033934 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0202 (Bit Score: 52; Significance: 1e-20; HSPs: 1)
Name: scaffold0202
Description:
Target: scaffold0202; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 37 - 176
Target Start/End: Original strand, 1899 - 2020
Alignment:
| Q |
37 |
tcacgatataagtgtttcgactgatactattttagaactgcattttaaaatgctttcccggaactggatgagatcaaaatcatcggggtcaggatatgca |
136 |
Q |
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| T |
1899 |
tcacgatataagtgtttcgactgatactatttcagaacagg---ttaaaatgctttcctggaaccggatgagatct---------------ggatatgca |
1980 |
T |
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| Q |
137 |
atatcacattagtggactaaccctctagcttgtttaggag |
176 |
Q |
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| T |
1981 |
atatcacattagtggactaaccctctagcttgtttaggag |
2020 |
T |
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Target: scaffold0016 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: scaffold0016
Description:
Target: scaffold0016; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 87 - 176
Target Start/End: Original strand, 30980 - 31069
Alignment:
| Q |
87 |
tgctttcccggaactggatgagatcaaaatcatcggggtcaggatatgcaatatcacattagtggactaaccctctagcttgtttaggag |
176 |
Q |
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| T |
30980 |
tgctttcctgaaactggataaggtcaaaatcatcgaggtttggatatgcaatatcaaagttgtggactaaccctctaccttttttaggag |
31069 |
T |
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