View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15856_low_32 (Length: 241)
Name: NF15856_low_32
Description: NF15856
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15856_low_32 |
 | |
|
| [»] chr6 (2 HSPs) |
| |
|
| [»] chr7 (1 HSPs) |
| |
|
| [»] chr1 (4 HSPs) |
| |
|
| [»] chr4 (1 HSPs) |
| |
|
| [»] chr2 (1 HSPs) |
| |
|
Alignment Details
Target: chr6 (Bit Score: 212; Significance: 1e-116; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 18 - 241
Target Start/End: Original strand, 24892807 - 24893030
Alignment:
| Q |
18 |
ggattgaaggtagctcgatagttgttaacgacttcagctattgagtgaggaagggcggtgtagagtgattcggtgtgttggccattggagcttatcacat |
117 |
Q |
| |
|
||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
24892807 |
ggattgaaggtagctcgatagttattaacggcttcagctattgagtgaggaagggcggtgtagagtgattcggtgtgttgaccattggagcttatcacat |
24892906 |
T |
|
| Q |
118 |
ccttaaccgtaaggtgaatgtcatgaatatcaataatggggaccgaggaaccaaggagaccatggggacaccaattgctaaaccaaaacgaggaggaacc |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24892907 |
ccttaaccgtaaggtgaatgtcatgaatatcaataatggggaccgaggaaccaaggagaccatggggacaccaattgctaaaccaaaacgaggaggaacc |
24893006 |
T |
|
| Q |
218 |
ggagcccggcctccaagaataacc |
241 |
Q |
| |
|
|||||||||||||||||||||||| |
|
|
| T |
24893007 |
ggagcccggcctccaagaataacc |
24893030 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 20 - 241
Target Start/End: Original strand, 24989635 - 24989856
Alignment:
| Q |
20 |
attgaaggtagctcgatagttgttaacgacttcagctattgagtgaggaagggcggtgtagagtgattcggtgtgttggccattggagcttatcacatcc |
119 |
Q |
| |
|
||||||| ||||| |||||||||| || ||| ||||||| || ||||||| |||||||| |||| |||||| || | |||||||||||| |||||| |
|
|
| T |
24989635 |
attgaagctagcttgatagttgtttacagtatcaactattgattgtggaagggaagtgtagagggattgggtgtggtgactattggagcttatgacatcc |
24989734 |
T |
|
| Q |
120 |
ttaaccgtaaggtgaatgtcatgaatatcaataatggggaccgaggaaccaaggagaccatggggacaccaattgctaaaccaaaacgaggaggaaccgg |
219 |
Q |
| |
|
|||||||| ||||||||| ||||||||||||||| || | | | || |||||||| |||||| | ||||||||||| |||||||| ||||| ||||| | |
|
|
| T |
24989735 |
ttaaccgttaggtgaatgacatgaatatcaataaccggaatcaaagacccaaggagtccatggtggcaccaattgctgaaccaaaaggaggatgaacccg |
24989834 |
T |
|
| Q |
220 |
agcccggcctccaagaataacc |
241 |
Q |
| |
|
|||| |||| ||||| |||||| |
|
|
| T |
24989835 |
agcctggccgccaagcataacc |
24989856 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 193; Significance: 1e-105; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 18 - 238
Target Start/End: Complemental strand, 23425680 - 23425460
Alignment:
| Q |
18 |
ggattgaaggtagctcgatagttgttaacgacttcagctattgagtgaggaagggcggtgtagagtgattcggtgtgttggccattggagcttatcacat |
117 |
Q |
| |
|
|||||||||||||||||||| ||||||||| | ||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
23425680 |
ggattgaaggtagctcgataattgttaacggcatcagctattgagtgaggaagggcagtgtagagagattcggtgtgttggccattggagcttatcacat |
23425581 |
T |
|
| Q |
118 |
ccttaaccgtaaggtgaatgtcatgaatatcaataatggggaccgaggaaccaaggagaccatggggacaccaattgctaaaccaaaacgaggaggaacc |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
23425580 |
ccttaaccgtaaggtgaatgtcatgaatatcaataatggggaccgaagaaccaaggagaccatggggacaccaattgcttaaccaaaacgaggaggaacc |
23425481 |
T |
|
| Q |
218 |
ggagcccggcctccaagaata |
238 |
Q |
| |
|
||||||||||||||||||||| |
|
|
| T |
23425480 |
ggagcccggcctccaagaata |
23425460 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 74 - 214
Target Start/End: Original strand, 38646206 - 38646346
Alignment:
| Q |
74 |
ggtgtagagtgattcggtgtgttggccattggagcttatcacatccttaaccgtaaggtgaatgtcatgaatatcaataatggggaccgaggaaccaagg |
173 |
Q |
| |
|
||||||||| | ||| |||||||| ||| || | ||| |||||| ||||| || |||||| ||| ||||| |||||||| ||||| | |||||||| |
|
|
| T |
38646206 |
ggtgtagagggcttcagtgtgttgtccagtgaaagttaacacatctttaactgtgaggtgagcgtcgtgaatgtcaataatagggactaaagaaccaaga |
38646305 |
T |
|
| Q |
174 |
agaccatggggacaccaattgctaaaccaaaacgaggagga |
214 |
Q |
| |
|
||||| | |||||||||||| |||||||| |||||||| |
|
|
| T |
38646306 |
tacccatgagaacaccaattgctgaaccaaaaggaggagga |
38646346 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 144; Significance: 8e-76; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 144; E-Value: 8e-76
Query Start/End: Original strand, 18 - 241
Target Start/End: Original strand, 23206837 - 23207060
Alignment:
| Q |
18 |
ggattgaaggtagctcgatagttgttaacgacttcagctattgagtgaggaagggcggtgtagagtgattcggtgtgttggccattggagcttatcacat |
117 |
Q |
| |
|
|||||||||||||||| |||| |||| ||| ||||||||||| ||||||||||||||||| || | || ||||||||||||||| ||||||||||||| |
|
|
| T |
23206837 |
ggattgaaggtagctctataggtgttgacggtgtcagctattgattgaggaagggcggtgtatagagcttgggtgtgttggccatttgagcttatcacat |
23206936 |
T |
|
| Q |
118 |
ccttaaccgtaaggtgaatgtcatgaatatcaataatggggaccgaggaaccaaggagaccatggggacaccaattgctaaaccaaaacgaggaggaacc |
217 |
Q |
| |
|
| || ||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||| ||||||||| |||||||| ||||||||||| |
|
|
| T |
23206937 |
cttttaccgtaaggtgaatgtcatgaatatcaataatggggaccaaagaaccaaggagaccatggggatgccaattgctgaaccaaaaagaggaggaacc |
23207036 |
T |
|
| Q |
218 |
ggagcccggcctccaagaataacc |
241 |
Q |
| |
|
|||||||||||||||||||||||| |
|
|
| T |
23207037 |
ggagcccggcctccaagaataacc |
23207060 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 48; Significance: 1e-18; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 74 - 241
Target Start/End: Complemental strand, 50453021 - 50452854
Alignment:
| Q |
74 |
ggtgtagagtgattcggtgtgttggccattggagcttatcacatccttaaccgtaaggtgaatgtcatgaatatcaataatggggaccgaggaaccaagg |
173 |
Q |
| |
|
||||||||| |||| ||| |||| || ||| || |||||||||| ||||||| || || | |||||||||||||||| ||||| | ||||||||| |
|
|
| T |
50453021 |
ggtgtagagggattgcgtgcgttgtccgttgaagtttatcacatctctaaccgtgagctggacatcatgaatatcaataacagggactaaagaaccaagg |
50452922 |
T |
|
| Q |
174 |
agaccatggggacaccaattgctaaaccaaaacgaggaggaaccggagcccggcctccaagaataacc |
241 |
Q |
| |
|
| |||||| |||||||||| ||||||||||| ||||| ||||| || || ||||||||||| ||||| |
|
|
| T |
50452921 |
ggcccatggtgacaccaattactaaaccaaaaagaggaagaacccgaacctggcctccaagagtaacc |
50452854 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 75 - 211
Target Start/End: Original strand, 10102714 - 10102842
Alignment:
| Q |
75 |
gtgtagagtgattcggtgtgttggccattggagcttatcacatccttaaccgtaaggtgaatgtcatgaatatcaataatggggaccgaggaaccaagga |
174 |
Q |
| |
|
|||||||| |||| |||||||||||||||| |||||||||||| ||||||| ||||| || ||||| || |||||| ||| ||||||||||| |
|
|
| T |
10102714 |
gtgtagagggattgggtgtgttggccattgaagcttatcacatatctaaccgttaggtggatatcatggatgtcaata------acc--ggaaccaagga |
10102805 |
T |
|
| Q |
175 |
gaccatggggacaccaattgctaaaccaaaacgagga |
211 |
Q |
| |
|
| |||||||||||||||||| | |||||||| ||||| |
|
|
| T |
10102806 |
ggccatggggacaccaattgttgaaccaaaaggagga |
10102842 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 129 - 223
Target Start/End: Complemental strand, 43299404 - 43299310
Alignment:
| Q |
129 |
aggtgaatgtcatgaatatcaataatggggaccgaggaaccaaggagaccatggggacaccaattgctaaaccaaaacgaggaggaaccggagcc |
223 |
Q |
| |
|
|||||||||||||| ||||||||||| || ||| | |||||||| | ||| || || ||||||||||| |||||||| ||||||||||| ||||| |
|
|
| T |
43299404 |
aggtgaatgtcatggatatcaataataggaaccaaagaaccaagaaaaccttgagggcaccaattgctgaaccaaaaggaggaggaacccgagcc |
43299310 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 74 - 214
Target Start/End: Complemental strand, 32891538 - 32891398
Alignment:
| Q |
74 |
ggtgtagagtgattcggtgtgttggccattggagcttatcacatccttaaccgtaaggtgaatgtcatgaatatcaataatggggaccgaggaaccaagg |
173 |
Q |
| |
|
||||||||| | ||| |||||||| ||| || | ||| |||||| ||||| || |||||| ||| ||||| |||||||| ||||| | |||||||| |
|
|
| T |
32891538 |
ggtgtagagggcttcagtgtgttgtccagtgaaagttaacacatctttaactgtgaggtgagcgtcgtgaatgtcaataatagggactaaagaaccaaga |
32891439 |
T |
|
| Q |
174 |
agaccatggggacaccaattgctaaaccaaaacgaggagga |
214 |
Q |
| |
|
||||| | |||||||||||| |||||||| |||||||| |
|
|
| T |
32891438 |
tacccatgagaacaccaattgctgaaccaaaaggaggagga |
32891398 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 44; Significance: 4e-16; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 74 - 241
Target Start/End: Complemental strand, 3882841 - 3882674
Alignment:
| Q |
74 |
ggtgtagagtgattcggtgtgttggccattggagcttatcacatccttaaccgtaaggtgaatgtcatgaatatcaataatggggaccgaggaaccaagg |
173 |
Q |
| |
|
||||||||| |||| ||| |||| || ||| || |||||||||| ||||||| || || | |||||||||||||||| ||||| | || |||||| |
|
|
| T |
3882841 |
ggtgtagagggattgcgtgcgttgtccgttgaagtttatcacatctctaaccgtgagctggacatcatgaatatcaataacagggactaaagagccaagg |
3882742 |
T |
|
| Q |
174 |
agaccatggggacaccaattgctaaaccaaaacgaggaggaaccggagcccggcctccaagaataacc |
241 |
Q |
| |
|
| |||||| |||||||||| ||||||||||| ||||| ||||| || || ||||||||||| ||||| |
|
|
| T |
3882741 |
gggccatggtgacaccaattactaaaccaaaaagaggaagaacccgaacctggcctccaagagtaacc |
3882674 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 129 - 241
Target Start/End: Complemental strand, 575485 - 575373
Alignment:
| Q |
129 |
aggtgaatgtcatgaatatcaataatggggaccgaggaaccaaggagaccatggggacaccaattgctaaaccaaaacgaggaggaaccggagcccggcc |
228 |
Q |
| |
|
|||||||| |||||||| || ||||| || ||| ||||||| || | ||||||| | ||||||||| | |||||||| ||||||||||| || || || | |
|
|
| T |
575485 |
aggtgaatatcatgaatgtctataataggaaccaaggaaccgagaaaaccatggtggcaccaattgttgaaccaaaaggaggaggaacctgaacctggtc |
575386 |
T |
|
| Q |
229 |
tccaagaataacc |
241 |
Q |
| |
|
|||||||||||| |
|
|
| T |
575385 |
gccaagaataacc |
575373 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University