View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15856_low_4 (Length: 493)

Name: NF15856_low_4
Description: NF15856
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15856_low_4
NF15856_low_4
[»] chr6 (5 HSPs)
chr6 (1-184)||(6127508-6127691)
chr6 (127-189)||(8978604-8978666)
chr6 (127-195)||(8508317-8508385)
chr6 (127-191)||(16338167-16338231)
chr6 (142-195)||(3358960-3359013)
[»] chr3 (10 HSPs)
chr3 (1-130)||(13220680-13220808)
chr3 (127-195)||(47733749-47733817)
chr3 (127-195)||(20044720-20044788)
chr3 (127-195)||(105907-105975)
chr3 (138-195)||(550395-550452)
chr3 (127-180)||(53293276-53293329)
chr3 (147-195)||(19861171-19861219)
chr3 (127-195)||(25135183-25135251)
chr3 (127-195)||(33605110-33605178)
chr3 (147-195)||(40013164-40013212)
[»] chr7 (13 HSPs)
chr7 (1-130)||(13107067-13107195)
chr7 (127-195)||(21954682-21954750)
chr7 (127-195)||(38277033-38277101)
chr7 (127-191)||(46881372-46881436)
chr7 (128-195)||(10623987-10624054)
chr7 (148-189)||(40016746-40016787)
chr7 (127-195)||(14657715-14657783)
chr7 (127-195)||(29352415-29352483)
chr7 (127-191)||(9137149-9137213)
chr7 (128-188)||(31724816-31724876)
chr7 (151-195)||(32571736-32571780)
chr7 (127-195)||(37714668-37714736)
chr7 (147-195)||(42644861-42644909)
[»] chr8 (6 HSPs)
chr8 (45-130)||(34190233-34190318)
chr8 (127-195)||(6219968-6220036)
chr8 (127-195)||(10334365-10334433)
chr8 (127-195)||(10633053-10633121)
chr8 (127-191)||(40907885-40907949)
chr8 (127-195)||(32778829-32778897)
[»] scaffold0238 (1 HSPs)
scaffold0238 (127-195)||(15544-15612)
[»] chr4 (11 HSPs)
chr4 (127-189)||(18995481-18995543)
chr4 (128-195)||(22121635-22121702)
chr4 (127-190)||(45756818-45756881)
chr4 (127-195)||(5814535-5814603)
chr4 (127-195)||(8712719-8712787)
chr4 (127-195)||(24789378-24789446)
chr4 (127-195)||(24818813-24818881)
chr4 (128-195)||(41837520-41837587)
chr4 (127-193)||(3159185-3159251)
chr4 (127-188)||(55600401-55600462)
chr4 (127-195)||(56062178-56062246)
[»] scaffold0006 (1 HSPs)
scaffold0006 (127-195)||(35860-35928)
[»] chr5 (10 HSPs)
chr5 (127-189)||(12215327-12215389)
chr5 (128-195)||(25962108-25962175)
chr5 (128-195)||(26905502-26905569)
chr5 (128-195)||(39915682-39915749)
chr5 (127-195)||(7151000-7151068)
chr5 (127-160)||(6639218-6639251)
chr5 (127-195)||(17523386-17523454)
chr5 (167-195)||(26294961-26294989)
chr5 (131-195)||(35275854-35275918)
chr5 (131-195)||(39416119-39416183)
[»] chr2 (11 HSPs)
chr2 (129-195)||(20124635-20124701)
chr2 (127-195)||(13548765-13548833)
chr2 (127-195)||(15920063-15920131)
chr2 (128-195)||(7581952-7582019)
chr2 (127-195)||(5754477-5754545)
chr2 (127-195)||(40039172-40039240)
chr2 (144-195)||(17792663-17792714)
chr2 (127-189)||(45694310-45694372)
chr2 (126-195)||(20598530-20598599)
chr2 (127-195)||(11580994-11581062)
chr2 (127-195)||(34471155-34471223)
[»] scaffold0886 (1 HSPs)
scaffold0886 (127-195)||(3605-3673)
[»] chr1 (12 HSPs)
chr1 (127-195)||(10304767-10304835)
chr1 (127-189)||(3101862-3101924)
chr1 (127-191)||(12871814-12871878)
chr1 (127-195)||(26097869-26097937)
chr1 (127-191)||(47551288-47551352)
chr1 (127-195)||(49772273-49772341)
chr1 (144-191)||(29551630-29551677)
chr1 (128-195)||(32878897-32878964)
chr1 (130-188)||(8960718-8960775)
chr1 (133-195)||(18889293-18889355)
chr1 (128-160)||(8937853-8937885)
chr1 (127-195)||(28399193-28399261)
[»] scaffold1379 (1 HSPs)
scaffold1379 (127-195)||(947-1015)
[»] scaffold0007 (1 HSPs)
scaffold0007 (127-195)||(201915-201983)


Alignment Details
Target: chr6 (Bit Score: 180; Significance: 5e-97; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 180; E-Value: 5e-97
Query Start/End: Original strand, 1 - 184
Target Start/End: Complemental strand, 6127691 - 6127508
Alignment:
Q  1 tttgtatgaagaagggaaaccaccttcttctatttctacaatccaggatccgacttctatcattgatactaataggaaatgaaccatcatggcaacgaaa 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  6127691 tttgtatgaagaagggaaaccaccttcttctatttctacaatccaggatccgacttctatcattgatactaataggaaatgaaccatcatggcaacaaaa 6127592  T
Q  101 agtttgattgagagggagaagaagaggcaacgttgacgacgctaaagtcattgattgaatatgtatttgctcaaaactaatatt 184  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6127591 agtttgattgagagggagaagaagaggcaacgttgacgacgctaaagtcattgattgaatatgtatttgctcaaaactaatatt 6127508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 127 - 189
Target Start/End: Original strand, 8978604 - 8978666
Alignment:
Q  127 gcaacgttgacgacgctaaagtcattgattgaatatgtatttgctcaaaactaatatttcaac 189  Q
    ||||||||||||| || ||| |||||||||||||||| | ||| ||||||||||| |||||||    
T  8978604 gcaacgttgacgatgcaaaaatcattgattgaatatgcacttgatcaaaactaatctttcaac 8978666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 127 - 195
Target Start/End: Complemental strand, 8508385 - 8508317
Alignment:
Q  127 gcaacgttgacgacgctaaagtcattgattgaatatgtatttgctcaaaactaatatttcaacctgaat 195  Q
    |||||||||||||||| ||||||||||||| ||| || | ||| ||||||||||| ||| || ||||||    
T  8508385 gcaacgttgacgacgcaaaagtcattgattcaatctgcacttgatcaaaactaatcttttaatctgaat 8508317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 127 - 191
Target Start/End: Original strand, 16338167 - 16338231
Alignment:
Q  127 gcaacgttgacgacgctaaagtcattgattgaatatgtatttgctcaaaactaatatttcaacct 191  Q
    ||||||| ||||||| |||||||||||||||||| || |  | |||||||||||| |||||||||    
T  16338167 gcaacgtcgacgacgttaaagtcattgattgaatttgcacctactcaaaactaatctttcaacct 16338231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 142 - 195
Target Start/End: Complemental strand, 3359013 - 3358960
Alignment:
Q  142 ctaaagtcattgattgaatatgtatttgctcaaaactaatatttcaacctgaat 195  Q
    ||||||| |||||||| ||||| ||||| ||||||||| | |||||||||||||    
T  3359013 ctaaagttattgattggatatgcatttgatcaaaactactctttcaacctgaat 3358960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 122; Significance: 2e-62; HSPs: 10)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 1 - 130
Target Start/End: Original strand, 13220680 - 13220808
Alignment:
Q  1 tttgtatgaagaagggaaaccaccttcttctatttctacaatccaggatccgacttctatcattgatactaataggaaatgaaccatcatggcaacgaaa 100  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13220680 tttgtatgaagaagggaaaccaccttcttctatttctaca-tccaggatccgacttctatcattgatactaataggaaatgaaccatcatggcaacgaaa 13220778  T
Q  101 agtttgattgagagggagaagaagaggcaa 130  Q
    ||||||||||||||||||||||||||||||    
T  13220779 agtttgattgagagggagaagaagaggcaa 13220808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 127 - 195
Target Start/End: Original strand, 47733749 - 47733817
Alignment:
Q  127 gcaacgttgacgacgctaaagtcattgattgaatatgtatttgctcaaaactaatatttcaacctgaat 195  Q
    ||||| |||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  47733749 gcaactttgacgacgccaaagtcattgattgaatatgcatttgctcaaaactaatatttcaacctgaat 47733817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 127 - 195
Target Start/End: Original strand, 20044720 - 20044788
Alignment:
Q  127 gcaacgttgacgacgctaaagtcattgattgaatatgtatttgctcaaaactaatatttcaacctgaat 195  Q
    |||||||||||||||  ||| | |||||||||||||| | ||||||||||||||| || ||||||||||    
T  20044720 gcaacgttgacgacgtcaaaatgattgattgaatatgcacttgctcaaaactaatcttccaacctgaat 20044788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 127 - 195
Target Start/End: Original strand, 105907 - 105975
Alignment:
Q  127 gcaacgttgacgacgctaaagtcattgattgaatatgtatttgctcaaaactaatatttcaacctgaat 195  Q
    |||||||||||||| | |||||||||||| | || || | ||||||||| ||||| |||||||||||||    
T  105907 gcaacgttgacgacacaaaagtcattgatcggatttgcacttgctcaaagctaatctttcaacctgaat 105975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 138 - 195
Target Start/End: Complemental strand, 550452 - 550395
Alignment:
Q  138 gacgctaaagtcattgattgaatatgtatttgctcaaaactaatatttcaacctgaat 195  Q
    ||||| |||||||||||||||||||| | ||| | ||| |||||||||||| ||||||    
T  550452 gacgcaaaagtcattgattgaatatgcaattgatgaaagctaatatttcaatctgaat 550395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 127 - 180
Target Start/End: Complemental strand, 53293329 - 53293276
Alignment:
Q  127 gcaacgttgacgacgctaaagtcattgattgaatatgtatttgctcaaaactaa 180  Q
    |||||||||||||||  ||| |||||||||||||||| | ||| ||||||||||    
T  53293329 gcaacgttgacgacgtcaaaatcattgattgaatatgcacttgatcaaaactaa 53293276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 147 - 195
Target Start/End: Original strand, 19861171 - 19861219
Alignment:
Q  147 gtcattgattgaatatgtatttgctcaaaactaatatttcaacctgaat 195  Q
    ||||||||| ||||||| | |||||||||  ||||||||||||||||||    
T  19861171 gtcattgatcgaatatgcacttgctcaaagttaatatttcaacctgaat 19861219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 127 - 195
Target Start/End: Original strand, 25135183 - 25135251
Alignment:
Q  127 gcaacgttgacgacgctaaagtcattgattgaatatgtatttgctcaaaactaatatttcaacctgaat 195  Q
    ||||||||||||| |  ||| ||||||||||| | || | ||||||||| ||||||||||||| |||||    
T  25135183 gcaacgttgacgatgtcaaaatcattgattgattttgcacttgctcaaatctaatatttcaacttgaat 25135251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 127 - 195
Target Start/End: Original strand, 33605110 - 33605178
Alignment:
Q  127 gcaacgttgacgacgctaaagtcattgattgaatatgtatttgctcaaaactaatatttcaacctgaat 195  Q
    |||||||||||||| | |||||||||||||  || |||| ||| ||||||||||| ||| || ||||||    
T  33605110 gcaacgttgacgacacaaaagtcattgatttgatttgtacttgttcaaaactaatcttttaagctgaat 33605178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 147 - 195
Target Start/End: Original strand, 40013164 - 40013212
Alignment:
Q  147 gtcattgattgaatatgtatttgctcaaaactaatatttcaacctgaat 195  Q
    |||||||||||||| || | ||||||||| ||||| |||||||||||||    
T  40013164 gtcattgattgaatctgcacttgctcaaagctaatctttcaacctgaat 40013212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 91; Significance: 7e-44; HSPs: 13)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 91; E-Value: 7e-44
Query Start/End: Original strand, 1 - 130
Target Start/End: Original strand, 13107067 - 13107195
Alignment:
Q  1 tttgtatgaagaagggaaaccaccttcttctatttctacaatccaggatccgacttctatcattgatactaataggaaatgaaccatcatggc-aacgaa 99  Q
    ||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||| |||| ||||||||||| ||  ||    
T  13107067 tttgtatgaagaagggaaaccaccttcttctatttctacatcccaggatccgacttctatcattgatactaatagg-aatg-accatcatggcaaaaaaa 13107164  T
Q  100 aagtttgattgagagggagaagaagaggcaa 130  Q
    |||||||||||||||||||||||||||||||    
T  13107165 aagtttgattgagagggagaagaagaggcaa 13107195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 127 - 195
Target Start/End: Original strand, 21954682 - 21954750
Alignment:
Q  127 gcaacgttgacgacgctaaagtcattgattgaatatgtatttgctcaaaactaatatttcaacctgaat 195  Q
    |||||||||||||||| |||||||||||| | || || | ||||||||| ||||| |||||||||||||    
T  21954682 gcaacgttgacgacgccaaagtcattgatcggatttgcacttgctcaaagctaatctttcaacctgaat 21954750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 127 - 195
Target Start/End: Complemental strand, 38277101 - 38277033
Alignment:
Q  127 gcaacgttgacgacgctaaagtcattgattgaatatgtatttgctcaaaactaatatttcaacctgaat 195  Q
    |||||||||||||||| |||||||||||| | || || | ||||||||| ||||||||||||| |||||    
T  38277101 gcaacgttgacgacgccaaagtcattgatcggatttgaacttgctcaaagctaatatttcaacatgaat 38277033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 127 - 191
Target Start/End: Complemental strand, 46881436 - 46881372
Alignment:
Q  127 gcaacgttgacgacgctaaagtcattgattgaatatgtatttgctcaaaactaatatttcaacct 191  Q
    ||||||||||||| || ||| ||||||||||||| || | ||| |||||||||||||||||||||    
T  46881436 gcaacgttgacgatgcaaaaatcattgattgaatttgaacttgatcaaaactaatatttcaacct 46881372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 128 - 195
Target Start/End: Complemental strand, 10624054 - 10623987
Alignment:
Q  128 caacgttgacgacgctaaagtcattgattgaatatgtatttgctcaaaactaatatttcaacctgaat 195  Q
    ||||||||||||| | ||||||||||||||||| |||| ||| ||||| ||||| ||||||| |||||    
T  10624054 caacgttgacgacacaaaagtcattgattgaatttgtacttgatcaaagctaatctttcaacttgaat 10623987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 148 - 189
Target Start/End: Original strand, 40016746 - 40016787
Alignment:
Q  148 tcattgattgaatatgtatttgctcaaaactaatatttcaac 189  Q
    |||||||||||||||| ||||| |||||||||||||||||||    
T  40016746 tcattgattgaatatgcatttgttcaaaactaatatttcaac 40016787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 127 - 195
Target Start/End: Original strand, 14657715 - 14657783
Alignment:
Q  127 gcaacgttgacgacgctaaagtcattgattgaatatgtatttgctcaaaactaatatttcaacctgaat 195  Q
    ||||| |||| ||||| |||||||||||| ||||||| |||||||||||  |||| |||||| ||||||    
T  14657715 gcaacattgatgacgccaaagtcattgatcgaatatgcatttgctcaaagttaatctttcaatctgaat 14657783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 127 - 195
Target Start/End: Complemental strand, 29352483 - 29352415
Alignment:
Q  127 gcaacgttgacgacgctaaagtcattgattgaatatgtatttgctcaaaactaatatttcaacctgaat 195  Q
    |||||||||||||||| |||||||||||| |||| |  | |||| |||| ||||| |||||||||||||    
T  29352483 gcaacgttgacgacgcaaaagtcattgatcgaatctacacttgcacaaagctaatctttcaacctgaat 29352415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 127 - 191
Target Start/End: Complemental strand, 9137213 - 9137149
Alignment:
Q  127 gcaacgttgacgacgctaaagtcattgattgaatatgtatttgctcaaaactaatatttcaacct 191  Q
    |||||||||||||||| ||||||| |||| ||||||| | || |||||| ||||| ||| |||||    
T  9137213 gcaacgttgacgacgccaaagtcaatgatcgaatatgcactttctcaaagctaatcttttaacct 9137149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 128 - 188
Target Start/End: Complemental strand, 31724876 - 31724816
Alignment:
Q  128 caacgttgacgacgctaaagtcattgattgaatatgtatttgctcaaaactaatatttcaa 188  Q
    |||||||||| |||| ||| ||||||||||||| || ||||  ||||||||| ||||||||    
T  31724876 caacgttgacaacgcaaaattcattgattgaatctgcatttaatcaaaactattatttcaa 31724816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 151 - 195
Target Start/End: Original strand, 32571736 - 32571780
Alignment:
Q  151 ttgattgaatatgtatttgctcaaaactaatatttcaacctgaat 195  Q
    |||||||||| || ||||||||||||||||| ||| |||||||||    
T  32571736 ttgattgaatctgcatttgctcaaaactaattttttaacctgaat 32571780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 127 - 195
Target Start/End: Complemental strand, 37714736 - 37714668
Alignment:
Q  127 gcaacgttgacgacgctaaagtcattgattgaatatgtatttgctcaaaactaatatttcaacctgaat 195  Q
    |||||||||||||||  || || ||||||||||| || | ||| |||||| |||| |||||||||||||    
T  37714736 gcaacgttgacgacgtaaatgttattgattgaatctgcacttgatcaaaattaatctttcaacctgaat 37714668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 147 - 195
Target Start/End: Complemental strand, 42644909 - 42644861
Alignment:
Q  147 gtcattgattgaatatgtatttgctcaaaactaatatttcaacctgaat 195  Q
    ||||||||| | || |||| ||||||||| |||||||||||||||||||    
T  42644909 gtcattgatcggatctgtacttgctcaaagctaatatttcaacctgaat 42644861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 86; Significance: 7e-41; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 86; E-Value: 7e-41
Query Start/End: Original strand, 45 - 130
Target Start/End: Original strand, 34190233 - 34190318
Alignment:
Q  45 aggatccgacttctatcattgatactaataggaaatgaaccatcatggcaacgaaaagtttgattgagagggagaagaagaggcaa 130  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34190233 aggatccgacttctatcattgatactaataggaaatgaaccatcatggcaacgaaaagtttgattgagagggagaagaagaggcaa 34190318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 127 - 195
Target Start/End: Original strand, 6219968 - 6220036
Alignment:
Q  127 gcaacgttgacgacgctaaagtcattgattgaatatgtatttgctcaaaactaatatttcaacctgaat 195  Q
    |||||||||| ||||| ||| ||||||||||||| || | |||||||| |||||| |||||||||||||    
T  6219968 gcaacgttgaagacgccaaaatcattgattgaatctgcacttgctcaagactaatctttcaacctgaat 6220036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 127 - 195
Target Start/End: Complemental strand, 10334433 - 10334365
Alignment:
Q  127 gcaacgttgacgacgctaaagtcattgattgaatatgtatttgctcaaaactaatatttcaacctgaat 195  Q
    ||||||||||||| || |||||||||||| | || || ||||||||||| |||||||||||| ||||||    
T  10334433 gcaacgttgacgatgccaaagtcattgatcggatctgcatttgctcaaagctaatatttcaatctgaat 10334365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 127 - 195
Target Start/End: Original strand, 10633053 - 10633121
Alignment:
Q  127 gcaacgttgacgacgctaaagtcattgattgaatatgtatttgctcaaaactaatatttcaacctgaat 195  Q
    |||||||||||||||| ||| ||||||||||||| |  | ||| ||||| ||||| |||||||||||||    
T  10633053 gcaacgttgacgacgcaaaaatcattgattgaatctacacttgatcaaagctaatctttcaacctgaat 10633121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 127 - 191
Target Start/End: Complemental strand, 40907949 - 40907885
Alignment:
Q  127 gcaacgttgacgacgctaaagtcattgattgaatatgtatttgctcaaaactaatatttcaacct 191  Q
    |||| ||||||||||  ||||| ||||||||||| |||||||| ||||||||||| || ||||||    
T  40907949 gcaatgttgacgacgtcaaagttattgattgaatttgtatttgatcaaaactaattttacaacct 40907885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 127 - 195
Target Start/End: Original strand, 32778829 - 32778897
Alignment:
Q  127 gcaacgttgacgacgctaaagtcattgattgaatatgtatttgctcaaaactaatatttcaacctgaat 195  Q
    |||| ||||||||||| |||||||||||| | || || | |||||||||  |||| |||||||||||||    
T  32778829 gcaaagttgacgacgcaaaagtcattgatcggatctgcacttgctcaaagttaatctttcaacctgaat 32778897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0238 (Bit Score: 45; Significance: 2e-16; HSPs: 1)
Name: scaffold0238
Description:

Target: scaffold0238; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 127 - 195
Target Start/End: Original strand, 15544 - 15612
Alignment:
Q  127 gcaacgttgacgacgctaaagtcattgattgaatatgtatttgctcaaaactaatatttcaacctgaat 195  Q
    |||||||||||||||| ||| |||||| |||||| |||| ||| |||||||||||||||||||||||||    
T  15544 gcaacgttgacgacgcaaaactcattggttgaatctgtacttgatcaaaactaatatttcaacctgaat 15612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 11)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 127 - 189
Target Start/End: Complemental strand, 18995543 - 18995481
Alignment:
Q  127 gcaacgttgacgacgctaaagtcattgattgaatatgtatttgctcaaaactaatatttcaac 189  Q
    |||||||||||||||| ||||||||||||||||| |||| ||| ||||||||||| |||||||    
T  18995543 gcaacgttgacgacgcaaaagtcattgattgaatctgtacttgatcaaaactaatctttcaac 18995481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 128 - 195
Target Start/End: Complemental strand, 22121702 - 22121635
Alignment:
Q  128 caacgttgacgacgctaaagtcattgattgaatatgtatttgctcaaaactaatatttcaacctgaat 195  Q
    |||||||||| |||| ||||||||||||| |||||| | ||||||||| ||||||||||||| |||||    
T  22121702 caacgttgacaacgcaaaagtcattgattaaatatgcacttgctcaaagctaatatttcaacttgaat 22121635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 127 - 190
Target Start/End: Complemental strand, 45756881 - 45756818
Alignment:
Q  127 gcaacgttgacgacgctaaagtcattgattgaatatgtatttgctcaaaactaatatttcaacc 190  Q
    |||| ||||||||  | ||||||||||||||||| || ||||||||||||||||||||||||||    
T  45756881 gcaatgttgacgataccaaagtcattgattgaatctgaatttgctcaaaactaatatttcaacc 45756818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 127 - 195
Target Start/End: Complemental strand, 5814603 - 5814535
Alignment:
Q  127 gcaacgttgacgacgctaaagtcattgattgaatatgtatttgctcaaaactaatatttcaacctgaat 195  Q
    |||||||||| ||||| |||||||||||| |||| || | ||||||||| ||||| |||||||||||||    
T  5814603 gcaacgttgatgacgccaaagtcattgatcgaatctgcacttgctcaaagctaatctttcaacctgaat 5814535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 127 - 195
Target Start/End: Complemental strand, 8712787 - 8712719
Alignment:
Q  127 gcaacgttgacgacgctaaagtcattgattgaatatgtatttgctcaaaactaatatttcaacctgaat 195  Q
    |||||||||||||||| |||||||||||| | || || | ||||||||| ||||| |||||||||||||    
T  8712787 gcaacgttgacgacgccaaagtcattgatcggatctgcacttgctcaaagctaatctttcaacctgaat 8712719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 127 - 195
Target Start/End: Complemental strand, 24789446 - 24789378
Alignment:
Q  127 gcaacgttgacgacgctaaagtcattgattgaatatgtatttgctcaaaactaatatttcaacctgaat 195  Q
    ||||||||||||| |  |||||||||| |||||| || ||||| ||||| ||||| |||||||||||||    
T  24789446 gcaacgttgacgaagtaaaagtcattggttgaatctgcatttgatcaaagctaatctttcaacctgaat 24789378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 127 - 195
Target Start/End: Original strand, 24818813 - 24818881
Alignment:
Q  127 gcaacgttgacgacgctaaagtcattgattgaatatgtatttgctcaaaactaatatttcaacctgaat 195  Q
    ||||||||||||| |  |||||||||| |||||| || ||||| ||||| ||||| |||||||||||||    
T  24818813 gcaacgttgacgaagtaaaagtcattggttgaatctgcatttgatcaaagctaatctttcaacctgaat 24818881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 128 - 195
Target Start/End: Complemental strand, 41837587 - 41837520
Alignment:
Q  128 caacgttgacgacgctaaagtcattgattgaatatgtatttgctcaaaactaatatttcaacctgaat 195  Q
    ||||||||||||||| ||| |||||||||||||||  | ||||| ||| |||| |||| |||||||||    
T  41837587 caacgttgacgacgccaaaatcattgattgaatatccacttgctaaaagctaacattttaacctgaat 41837520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 127 - 193
Target Start/End: Complemental strand, 3159251 - 3159185
Alignment:
Q  127 gcaacgttgacgacgctaaagtcattgattgaatatgtatttgctcaaaactaatatttcaacctga 193  Q
    |||||||||| ||||||||| |||||||| | ||||| | ||||||||| ||||  |||||||||||    
T  3159251 gcaacgttgatgacgctaaaatcattgatcggatatgcacttgctcaaagctaacctttcaacctga 3159185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 127 - 188
Target Start/End: Original strand, 55600401 - 55600462
Alignment:
Q  127 gcaacgttgacgacgctaaagtcattgattgaatatgtatttgctcaaaactaatatttcaa 188  Q
    |||||||||||||||||||| |||||||||| || ||   ||||||||| ||||| ||||||    
T  55600401 gcaacgttgacgacgctaaaatcattgattggatctgcgcttgctcaaagctaatctttcaa 55600462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 127 - 195
Target Start/End: Complemental strand, 56062246 - 56062178
Alignment:
Q  127 gcaacgttgacgacgctaaagtcattgattgaatatgtatttgctcaaaactaatatttcaacctgaat 195  Q
    |||||||||||||||  |||  |||||||||||| |||| |||||||||  |||||| ||||| |||||    
T  56062246 gcaacgttgacgacgtcaaatacattgattgaatctgtacttgctcaaagataatatgtcaacttgaat 56062178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0006 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 1)
Name: scaffold0006
Description:

Target: scaffold0006; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 127 - 195
Target Start/End: Complemental strand, 35928 - 35860
Alignment:
Q  127 gcaacgttgacgacgctaaagtcattgattgaatatgtatttgctcaaaactaatatttcaacctgaat 195  Q
    |||||||| |||| || ||| ||||||||||||| |||| ||| |||||||||||||||||||||||||    
T  35928 gcaacgttaacgatgcaaaaatcattgattgaatctgtacttgatcaaaactaatatttcaacctgaat 35860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 10)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 127 - 189
Target Start/End: Complemental strand, 12215389 - 12215327
Alignment:
Q  127 gcaacgttgacgacgctaaagtcattgattgaatatgtatttgctcaaaactaatatttcaac 189  Q
    |||||||||||||||| |||||||||||| | ||||| | ||||||||||||||| |||||||    
T  12215389 gcaacgttgacgacgcaaaagtcattgatcggatatgcacttgctcaaaactaatctttcaac 12215327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 128 - 195
Target Start/End: Complemental strand, 25962175 - 25962108
Alignment:
Q  128 caacgttgacgacgctaaagtcattgattgaatatgtatttgctcaaaactaatatttcaacctgaat 195  Q
    ||||||||||||||| ||||||||||||   || || | ||||||||||||||| |||||||||||||    
T  25962175 caacgttgacgacgcaaaagtcattgatcagatctgcacttgctcaaaactaatctttcaacctgaat 25962108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 128 - 195
Target Start/End: Original strand, 26905502 - 26905569
Alignment:
Q  128 caacgttgacgacgctaaagtcattgattgaatatgtatttgctcaaaactaatatttcaacctgaat 195  Q
    |||||||||| || ||||||||||||||||||| || |||| ||||||  ||||||||| ||||||||    
T  26905502 caacgttgacaacactaaagtcattgattgaatctgcatttcctcaaagataatatttccacctgaat 26905569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 128 - 195
Target Start/End: Complemental strand, 39915749 - 39915682
Alignment:
Q  128 caacgttgacgacgctaaagtcattgattgaatatgtatttgctcaaaactaatatttcaacctgaat 195  Q
    ||||||||||||||  ||||| |||||||| ||||| | ||||||||| ||||| |||||||||||||    
T  39915749 caacgttgacgacgtcaaagttattgattggatatgcacttgctcaaagctaatctttcaacctgaat 39915682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 127 - 195
Target Start/End: Complemental strand, 7151068 - 7151000
Alignment:
Q  127 gcaacgttgacgacgctaaagtcattgattgaatatgtatttgctcaaaactaatatttcaacctgaat 195  Q
    |||||||||| ||||| |||||||||||| |||| |||| || |||||||| | | |||||||||||||    
T  7151068 gcaacgttgatgacgccaaagtcattgatcgaatttgtacttactcaaaaccagtctttcaacctgaat 7151000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 127 - 160
Target Start/End: Complemental strand, 6639251 - 6639218
Alignment:
Q  127 gcaacgttgacgacgctaaagtcattgattgaat 160  Q
    |||||||||||||||| |||||||||||||||||    
T  6639251 gcaacgttgacgacgcaaaagtcattgattgaat 6639218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 127 - 195
Target Start/End: Original strand, 17523386 - 17523454
Alignment:
Q  127 gcaacgttgacgacgctaaagtcattgattgaatatgtatttgctcaaaactaatatttcaacctgaat 195  Q
    ||||||||||| | || ||||||||| ||||||| || | ||| ||||||||||| |||| ||||||||    
T  17523386 gcaacgttgacaatgcaaaagtcattaattgaatttgcacttgatcaaaactaatctttcgacctgaat 17523454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 167 - 195
Target Start/End: Original strand, 26294961 - 26294989
Alignment:
Q  167 ttgctcaaaactaatatttcaacctgaat 195  Q
    |||||||||||||||||||||||||||||    
T  26294961 ttgctcaaaactaatatttcaacctgaat 26294989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 131 - 195
Target Start/End: Original strand, 35275854 - 35275918
Alignment:
Q  131 cgttgacgacgctaaagtcattgattgaatatgtatttgctcaaaactaatatttcaacctgaat 195  Q
    |||||||||||| ||||| |||||||| || |||| ||||||||| ||||  |||||||| ||||    
T  35275854 cgttgacgacgccaaagttattgattggatctgtacttgctcaaagctaacctttcaaccggaat 35275918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 131 - 195
Target Start/End: Original strand, 39416119 - 39416183
Alignment:
Q  131 cgttgacgacgctaaagtcattgattgaatatgtatttgctcaaaactaatatttcaacctgaat 195  Q
    |||||||||||| ||| ||||||||||||| |  |||||  |||| ||||| |||||||||||||    
T  39416119 cgttgacgacgcaaaaatcattgattgaatttacatttgaacaaagctaatctttcaacctgaat 39416183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 11)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 129 - 195
Target Start/End: Original strand, 20124635 - 20124701
Alignment:
Q  129 aacgttgacgacgctaaagtcattgattgaatatgtatttgctcaaaactaatatttcaacctgaat 195  Q
    |||||||||||||| |||||||||||| |||| || | ||||||||| ||||| |||||||||||||    
T  20124635 aacgttgacgacgccaaagtcattgatcgaatttgcacttgctcaaagctaatctttcaacctgaat 20124701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 127 - 195
Target Start/End: Original strand, 13548765 - 13548833
Alignment:
Q  127 gcaacgttgacgacgctaaagtcattgattgaatatgtatttgctcaaaactaatatttcaacctgaat 195  Q
    ||||||||||| | || ||||||||||||||||| || ||||| ||||| ||||| |||||||||||||    
T  13548765 gcaacgttgacaatgcaaaagtcattgattgaatctgcatttgatcaaagctaatctttcaacctgaat 13548833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 127 - 195
Target Start/End: Complemental strand, 15920131 - 15920063
Alignment:
Q  127 gcaacgttgacgacgctaaagtcattgattgaatatgtatttgctcaaaactaatatttcaacctgaat 195  Q
    |||||||||||||||| |||||||||||| | || || | |||| |||| |||||||||||||||||||    
T  15920131 gcaacgttgacgacgccaaagtcattgatcggatctgcacttgcacaaagctaatatttcaacctgaat 15920063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 128 - 195
Target Start/End: Original strand, 7581952 - 7582019
Alignment:
Q  128 caacgttgacgacgctaaagtcattgattgaatatgtatttgctcaaaactaatatttcaacctgaat 195  Q
    ||||||||||||||  |||||| |||||||||| || | |||||||||  ||||||||||||||||||    
T  7581952 caacgttgacgacgtcaaagtcgttgattgaatttgcacttgctcaaagataatatttcaacctgaat 7582019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 127 - 195
Target Start/End: Complemental strand, 5754545 - 5754477
Alignment:
Q  127 gcaacgttgacgacgctaaagtcattgattgaatatgtatttgctcaaaactaatatttcaacctgaat 195  Q
    |||||||||||||| | |||||||||||| | || || | ||||||||| ||||| |||||||||||||    
T  5754545 gcaacgttgacgacaccaaagtcattgatcggatctgcacttgctcaaagctaatctttcaacctgaat 5754477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 127 - 195
Target Start/End: Original strand, 40039172 - 40039240
Alignment:
Q  127 gcaacgttgacgacgctaaagtcattgattgaatatgtatttgctcaaaactaatatttcaacctgaat 195  Q
    |||||||||| || || ||||||||||||||||| || | ||| |||| |||||| |||||||||||||    
T  40039172 gcaacgttgatgatgcaaaagtcattgattgaatctgcacttgatcaatactaatttttcaacctgaat 40039240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 144 - 195
Target Start/End: Complemental strand, 17792714 - 17792663
Alignment:
Q  144 aaagtcattgattgaatatgtatttgctcaaaactaatatttcaacctgaat 195  Q
    ||||||||||||||||| || ||||| ||||||||||| ||||||| |||||    
T  17792714 aaagtcattgattgaatctgcatttgatcaaaactaatctttcaacatgaat 17792663  T

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Target: chr2; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 127 - 189
Target Start/End: Original strand, 45694310 - 45694372
Alignment:
Q  127 gcaacgttgacgacgctaaagtcattgattgaatatgtatttgctcaaaactaatatttcaac 189  Q
    ||||||||||||||| ||||||||||||||  || || |||||||||||  |||| |||||||    
T  45694310 gcaacgttgacgacgttaaagtcattgattagatctgcatttgctcaaagataatctttcaac 45694372  T

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Target: chr2; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 126 - 195
Target Start/End: Original strand, 20598530 - 20598599
Alignment:
Q  126 ggcaacgttgacgacgctaaagtcattgattgaatatgtatttgctcaaaactaatatttcaacctgaat 195  Q
    ||||||||| ||||||| |||||||||| |||||| |  | ||| | ||||||||| |||||||||||||    
T  20598530 ggcaacgttaacgacgcaaaagtcattggttgaatctacacttgattaaaactaatctttcaacctgaat 20598599  T

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Target: chr2; HSP #10
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 127 - 195
Target Start/End: Original strand, 11580994 - 11581062
Alignment:
Q  127 gcaacgttgacgacgctaaagtcattgattgaatatgtatttgctcaaaactaatatttcaacctgaat 195  Q
    |||||||||||||| | ||| ||||||||||||| || | ||| | ||| ||||| |||||||||||||    
T  11580994 gcaacgttgacgacacaaaaatcattgattgaatttgcacttgatgaaacctaatctttcaacctgaat 11581062  T

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Target: chr2; HSP #11
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 127 - 195
Target Start/End: Complemental strand, 34471223 - 34471155
Alignment:
Q  127 gcaacgttgacgacgctaaagtcattgattgaatatgtatttgctcaaaactaatatttcaacctgaat 195  Q
    ||||||||||| |||| |||||||||||||| || || | |||||||||  |||| ||||||| |||||    
T  34471223 gcaacgttgacaacgccaaagtcattgattggatctgcacttgctcaaagttaatctttcaacatgaat 34471155  T

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Target: scaffold0886 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: scaffold0886
Description:

Target: scaffold0886; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 127 - 195
Target Start/End: Original strand, 3605 - 3673
Alignment:
Q  127 gcaacgttgacgacgctaaagtcattgattgaatatgtatttgctcaaaactaatatttcaacctgaat 195  Q
    |||||||| || | || ||| ||||||||||||| |||| ||| |||||||||||||||||||||||||    
T  3605 gcaacgttaacaatgcaaaaatcattgattgaatctgtacttgatcaaaactaatatttcaacctgaat 3673  T

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Target: chr1 (Bit Score: 37; Significance: 0.00000000001; HSPs: 12)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 127 - 195
Target Start/End: Complemental strand, 10304835 - 10304767
Alignment:
Q  127 gcaacgttgacgacgctaaagtcattgattgaatatgtatttgctcaaaactaatatttcaacctgaat 195  Q
    ||||||||||||| |||||||||||||||||||| |  | || |||||| ||||||||||||| |||||    
T  10304835 gcaacgttgacgatgctaaagtcattgattgaatctccactttctcaaagctaatatttcaacttgaat 10304767  T

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Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 127 - 189
Target Start/End: Complemental strand, 3101924 - 3101862
Alignment:
Q  127 gcaacgttgacgacgctaaagtcattgattgaatatgtatttgctcaaaactaatatttcaac 189  Q
    |||| ||||||||||| ||||||||| |||||||||| | |||||||||  ||||||||||||    
T  3101924 gcaatgttgacgacgccaaagtcattaattgaatatgcacttgctcaaagttaatatttcaac 3101862  T

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Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 127 - 191
Target Start/End: Complemental strand, 12871878 - 12871814
Alignment:
Q  127 gcaacgttgacgacgctaaagtcattgattgaatatgtatttgctcaaaactaatatttcaacct 191  Q
    ||||||||||||| || |||||||||||| |||| || | ||||||||| ||||| |||||||||    
T  12871878 gcaacgttgacgatgccaaagtcattgatcgaatctgcacttgctcaaagctaatctttcaacct 12871814  T

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Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 127 - 195
Target Start/End: Original strand, 26097869 - 26097937
Alignment:
Q  127 gcaacgttgacgacgctaaagtcattgattgaatatgtatttgctcaaaactaatatttcaacctgaat 195  Q
    |||| ||||||||||| ||||||||| || |||| || | ||||||||| ||||| |||||||||||||    
T  26097869 gcaatgttgacgacgcaaaagtcattaatggaatctgcacttgctcaaagctaatttttcaacctgaat 26097937  T

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Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 127 - 191
Target Start/End: Complemental strand, 47551352 - 47551288
Alignment:
Q  127 gcaacgttgacgacgctaaagtcattgattgaatatgtatttgctcaaaactaatatttcaacct 191  Q
    |||||||||||||||  |||||||||||||| || || | ||||||||| ||||| |||||||||    
T  47551352 gcaacgttgacgacgtcaaagtcattgattggatctgcacttgctcaaagctaatctttcaacct 47551288  T

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Target: chr1; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 127 - 195
Target Start/End: Complemental strand, 49772341 - 49772273
Alignment:
Q  127 gcaacgttgacgacgctaaagtcattgattgaatatgtatttgctcaaaactaatatttcaacctgaat 195  Q
    ||||| |||||||||| |||||||||  |||||| || ||||| ||||| ||||||||||||| |||||    
T  49772341 gcaacattgacgacgcaaaagtcattagttgaatctgcatttgatcaaagctaatatttcaacgtgaat 49772273  T

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Target: chr1; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 144 - 191
Target Start/End: Original strand, 29551630 - 29551677
Alignment:
Q  144 aaagtcattgattgaatatgtatttgctcaaaactaatatttcaacct 191  Q
    |||||| ||||||||||||| | ||| |||||||||||||||||||||    
T  29551630 aaagtctttgattgaatatgcacttgatcaaaactaatatttcaacct 29551677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 128 - 195
Target Start/End: Complemental strand, 32878964 - 32878897
Alignment:
Q  128 caacgttgacgacgctaaagtcattgattgaatatgtatttgctcaaaactaatatttcaacctgaat 195  Q
    ||||||||||||| | |||||||||||| | || || | ||||||||| ||||| |||||||||||||    
T  32878964 caacgttgacgacaccaaagtcattgatcggatctgcacttgctcaaagctaatctttcaacctgaat 32878897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 130 - 188
Target Start/End: Complemental strand, 8960775 - 8960718
Alignment:
Q  130 acgttgacgacgctaaagtcattgattgaatatgtatttgctcaaaactaatatttcaa 188  Q
    ||||||||||||  |||||||||||||||||||||   ||||| |||||||||||||||    
T  8960775 acgttgacgacgtcaaagtcattgattgaatatgtcaatgctc-aaactaatatttcaa 8960718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 133 - 195
Target Start/End: Complemental strand, 18889355 - 18889293
Alignment:
Q  133 ttgacgacgctaaagtcattgattgaatatgtatttgctcaaaactaatatttcaacctgaat 195  Q
    ||||||| || |||||||||||||||||||| | ||| ||||||||||| |||  ||||||||    
T  18889355 ttgacgatgcaaaagtcattgattgaatatgcacttgatcaaaactaatcttttgacctgaat 18889293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 128 - 160
Target Start/End: Complemental strand, 8937885 - 8937853
Alignment:
Q  128 caacgttgacgacgctaaagtcattgattgaat 160  Q
    ||||||||||||||| |||||||||||||||||    
T  8937885 caacgttgacgacgccaaagtcattgattgaat 8937853  T

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Target: chr1; HSP #12
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 127 - 195
Target Start/End: Original strand, 28399193 - 28399261
Alignment:
Q  127 gcaacgttgacgacgctaaagtcattgattgaatatgtatttgctcaaaactaatatttcaacctgaat 195  Q
    |||| |||||| | || |||||||||||||| || || | ||||||||| ||||||||||||| |||||    
T  28399193 gcaatgttgacaatgcaaaagtcattgattggatctgcacttgctcaaagctaatatttcaacatgaat 28399261  T

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Target: scaffold1379 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: scaffold1379
Description:

Target: scaffold1379; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 127 - 195
Target Start/End: Original strand, 947 - 1015
Alignment:
Q  127 gcaacgttgacgacgctaaagtcattgattgaatatgtatttgctcaaaactaatatttcaacctgaat 195  Q
    |||||||||| ||| | |||||||||||| |||| || | || |||||| ||||| |||||||||||||    
T  947 gcaacgttgatgacaccaaagtcattgatcgaatctgcagtttctcaaagctaatctttcaacctgaat 1015  T

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Target: scaffold0007 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 127 - 195
Target Start/End: Original strand, 201915 - 201983
Alignment:
Q  127 gcaacgttgacgacgctaaagtcattgattgaatatgtatttgctcaaaactaatatttcaacctgaat 195  Q
    |||| |||||| |||| ||| ||||||||||||| |  | ||| ||||| |||||||||||||||||||    
T  201915 gcaatgttgacaacgccaaaatcattgattgaattttcacttgttcaaagctaatatttcaacctgaat 201983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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