View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15856_low_6 (Length: 475)
Name: NF15856_low_6
Description: NF15856
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15856_low_6 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 434; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 434; E-Value: 0
Query Start/End: Original strand, 12 - 457
Target Start/End: Original strand, 30886525 - 30886970
Alignment:
| Q |
12 |
atgaatcacatacagaatttcacatttaactctgaaataaagtatactggtaagagaaacaagcagtttatacctctccagtaaattgcacagttgtgaa |
111 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30886525 |
atgaatcacatacagaatttcacatttaactctgaaataaagtatactggtaagagaaacaagcagtttatacctctccagtaaattgcacagttgtgaa |
30886624 |
T |
|
| Q |
112 |
tttattgtcaatcccagatgtaccttcaaaaacctaggcaatggtacaaaaagctaaattaatataagccaagtttttgttattagaaccaatacaacaa |
211 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
30886625 |
tttattgtcaatcccagatgtaccttcaaaaacctaggcaatggtacaaaaagctaaattaatataagccaagtttttgttattagaaccaacacaacaa |
30886724 |
T |
|
| Q |
212 |
catgaacaaagtaaagacaacaccaaaggcttttacttaacaactcataaaatcatagaaacatgaaaatcttataaatttcggttacatgttgaatata |
311 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30886725 |
catgaacaaagtaaagacaacaccaaaggcttttacttaacaactcataaaatctgagaaacatgaaaatcttataaatttcggttacatgttgaatata |
30886824 |
T |
|
| Q |
312 |
gaggtaattatctcctcataatatatccaactacatatgattccgaatgcaccatagagttgggcagtatacactgactcacctgaacaacagctttttc |
411 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30886825 |
gaggtaattatctcctcataatatatccaactacatatgattccgaatgcaccatagagttgggcagtatacactgactcacctgaacaacagctttttc |
30886924 |
T |
|
| Q |
412 |
gccatcaacttctagaacttgtccacgcctagtcgttccatctcct |
457 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30886925 |
gccatcaacttctagaacttgtccacgcctagtcgttccatctcct |
30886970 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 389 - 453
Target Start/End: Complemental strand, 51174622 - 51174558
Alignment:
| Q |
389 |
ctcacctgaacaacagctttttcgccatcaacttctagaacttgtccacgcctagtcgttccatc |
453 |
Q |
| |
|
||||||||||||||||| |||||||||||||| || |||||||||||||||| || |||||||| |
|
|
| T |
51174622 |
ctcacctgaacaacagccttttcgccatcaacctcgagaacttgtccacgccgggtagttccatc |
51174558 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 82 - 146
Target Start/End: Complemental strand, 51174963 - 51174899
Alignment:
| Q |
82 |
tacctctccagtaaattgcacagttgtgaatttattgtcaatcccagatgtaccttcaaaaacct |
146 |
Q |
| |
|
||||||||||||||| || || || || |||||||||||||||||||||||||||||||| |||| |
|
|
| T |
51174963 |
tacctctccagtaaactgtacggtcgtaaatttattgtcaatcccagatgtaccttcaaatacct |
51174899 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University