View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15856_low_8 (Length: 446)
Name: NF15856_low_8
Description: NF15856
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15856_low_8 |
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Alignment Details
Target: chr5 (Bit Score: 161; Significance: 1e-85; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 161; E-Value: 1e-85
Query Start/End: Original strand, 1 - 177
Target Start/End: Original strand, 4808209 - 4808385
Alignment:
| Q |
1 |
tgcaattgcgactgcacctgcaccaatgttttttgcacaggacttaacctcatcgatcaatacttcctcggatggcaatatgccgcagccgtccatctga |
100 |
Q |
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| T |
4808209 |
tgcaattgtgactgcacctgcaccaatgtcttttgcacaggacttaacctcatcgatcaatacttcctcggatggcaatatgccgcaaccgtccatctga |
4808308 |
T |
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| Q |
101 |
ggtgaagccgtttgtatcaaaatatctcaagcaccatatgagaaaggaattgaagtttgtaagaggcacctttgtgg |
177 |
Q |
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| T |
4808309 |
ggtgaagccgtttgtatcaaaatatctcaagcaccatatgagaaaggaattgaagtttgcaagaggcacctttgtgg |
4808385 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 120 - 329
Target Start/End: Original strand, 27504375 - 27504584
Alignment:
| Q |
120 |
aaatatctcaagcaccatatgagaaaggaattgaagtttgtaagaggcacctttgtgggagacttgtattgaataagggcgataaaccgtataccacgaa |
219 |
Q |
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| T |
27504375 |
aaatttctcaagcaccatatgagaagggggtcgaagtctgtaagagaaaccttcgtgagaggctagtcttgagcaagggggataaaccatacaatgcaaa |
27504474 |
T |
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| Q |
220 |
ggatattcagatgaagcttcagaagcaatggaagacaacatgaccatggaccatgtcgtctttaggtaaggggtattacgaattttctttcgccttcgaa |
319 |
Q |
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| T |
27504475 |
ggacatttagctcaagcttcaaaaacagtggaacactgcaagaccatggacactgttgtcattaggtataggctattatgaattctttttcgcctccgaa |
27504574 |
T |
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| Q |
320 |
aatgatttac |
329 |
Q |
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| T |
27504575 |
actgatttac |
27504584 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 382 - 410
Target Start/End: Complemental strand, 22393050 - 22393022
Alignment:
| Q |
382 |
tttgaatggacaaaggattttaatttgca |
410 |
Q |
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| T |
22393050 |
tttgaatggacaaaggattttaatttgca |
22393022 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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