View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15856_low_9 (Length: 418)

Name: NF15856_low_9
Description: NF15856
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15856_low_9
NF15856_low_9
[»] chr4 (5 HSPs)
chr4 (186-399)||(8498336-8498549)
chr4 (296-351)||(27447495-27447550)
chr4 (296-351)||(27459834-27459889)
chr4 (302-366)||(48708983-48709047)
chr4 (241-372)||(9215940-9216071)
[»] chr5 (2 HSPs)
chr5 (302-397)||(23683530-23683625)
chr5 (302-397)||(23851186-23851281)
[»] chr8 (2 HSPs)
chr8 (302-366)||(14776624-14776688)
chr8 (302-366)||(11304668-11304732)
[»] chr2 (1 HSPs)
chr2 (283-351)||(41215800-41215868)
[»] chr3 (1 HSPs)
chr3 (302-397)||(11965974-11966069)


Alignment Details
Target: chr4 (Bit Score: 198; Significance: 1e-108; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 186 - 399
Target Start/End: Original strand, 8498336 - 8498549
Alignment:
Q  186 ggatcaatctcatgtcagacttgattggtttcaacaaaggttcattgcccttcaattaccttggtgttccgattttcaagggtaagcaaaagagatcaca 285  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  8498336 ggatcaatctcatgtcagacttgattggtttcaacaaaggttcattgcccttcaattaccttggtgttctgattttcaagggtaagcaaaagagatcaca 8498435  T
Q  286 tctttaaccgattgtagataagattaaatctaagcttagtgcttggaaagcttctcttctctctatagcatgaagagtcaccttagtgaaagcaatcatt 385  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  8498436 tcttcaaccgattgtagataagattaaatctaagcttagtgcttggaaagcttctcttctctctatagcaggaagagtcaccttagtgaaagcaatcatt 8498535  T
Q  386 ctaggtatgatggt 399  Q
    | ||||||||||||    
T  8498536 caaggtatgatggt 8498549  T

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Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 296 - 351
Target Start/End: Original strand, 27447495 - 27447550
Alignment:
Q  296 attgtagataagattaaatctaagcttagtgcttggaaagcttctcttctctctat 351  Q
    |||| ||||||||| || |||||||||||||| |||||||||||||||||||||||    
T  27447495 attgcagataagataaagtctaagcttagtgcgtggaaagcttctcttctctctat 27447550  T

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Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 296 - 351
Target Start/End: Original strand, 27459834 - 27459889
Alignment:
Q  296 attgtagataagattaaatctaagcttagtgcttggaaagcttctcttctctctat 351  Q
    |||| ||||||||| || |||||||||||||| |||||||||| ||||||||||||    
T  27459834 attgcagataagataaagtctaagcttagtgcgtggaaagcttttcttctctctat 27459889  T

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Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 302 - 366
Target Start/End: Original strand, 48708983 - 48709047
Alignment:
Q  302 gataagattaaatctaagcttagtgcttggaaagcttctcttctctctatagcatgaagagtcac 366  Q
    ||||||||||| ||||||||| ||||||||||||| |||||| | ||||| ||| | ||||||||    
T  48708983 gataagattaagtctaagcttggtgcttggaaagcctctcttttatctattgcagggagagtcac 48709047  T

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Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 241 - 372
Target Start/End: Original strand, 9215940 - 9216071
Alignment:
Q  241 ttaccttggtgttccgattttcaagggtaagcaaaagagatcacatctttaaccgattgtagataagattaaatctaagcttagtgcttggaaagcttct 340  Q
    ||||||||| || || ||||||||||| |||| |||||  || ||| |  |||| ||||  || ||||| |||||| |||||||||| |||||||| |||    
T  9215940 ttaccttggagtcccaattttcaaggggaagccaaagaagtctcatttacaacctattgctgacaagataaaatctgagcttagtgcgtggaaagcatct 9216039  T
Q  341 cttctctctatagcatgaagagtcaccttagt 372  Q
    ||| | || || ||| |||||||||| |||||    
T  9216040 cttttatccattgcaggaagagtcactttagt 9216071  T

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Target: chr5 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 302 - 397
Target Start/End: Original strand, 23683530 - 23683625
Alignment:
Q  302 gataagattaaatctaagcttagtgcttggaaagcttctcttctctctatagcatgaagagtcaccttagtgaaagcaatcattctaggtatgatg 397  Q
    ||||||||||| ||||||||| ||||||||||||| |||||||| ||||| ||| | ||||||||  | ||||||||  | |||| ||||||||||    
T  23683530 gataagattaagtctaagcttggtgcttggaaagcctctcttctatctattgcagggagagtcactcttgtgaaagctgtgattcaaggtatgatg 23683625  T

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Target: chr5; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 302 - 397
Target Start/End: Complemental strand, 23851281 - 23851186
Alignment:
Q  302 gataagattaaatctaagcttagtgcttggaaagcttctcttctctctatagcatgaagagtcaccttagtgaaagcaatcattctaggtatgatg 397  Q
    ||||||||||| ||||||||| ||||||||||||| |||||||| ||||| ||| | ||||||||  | ||||||||  | |||| ||||||||||    
T  23851281 gataagattaagtctaagcttggtgcttggaaagcctctcttctatctattgcagggagagtcactcttgtgaaagctgtgattcaaggtatgatg 23851186  T

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Target: chr8 (Bit Score: 37; Significance: 0.00000000001; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 302 - 366
Target Start/End: Complemental strand, 14776688 - 14776624
Alignment:
Q  302 gataagattaaatctaagcttagtgcttggaaagcttctcttctctctatagcatgaagagtcac 366  Q
    ||||||||||| ||||||||| | |||||||||||||||||||| ||||| ||| | ||||||||    
T  14776688 gataagattaagtctaagcttggggcttggaaagcttctcttctatctattgcagggagagtcac 14776624  T

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Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 302 - 366
Target Start/End: Original strand, 11304668 - 11304732
Alignment:
Q  302 gataagattaaatctaagcttagtgcttggaaagcttctcttctctctatagcatgaagagtcac 366  Q
    ||||||||||| ||||||| | ||||||||||||| |||||| | ||||| ||| | ||||||||    
T  11304668 gataagattaagtctaagcatggtgcttggaaagcctctcttttatctattgcagggagagtcac 11304732  T

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Target: chr2 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 283 - 351
Target Start/End: Complemental strand, 41215868 - 41215800
Alignment:
Q  283 acatctttaaccgattgtagataagattaaatctaagcttagtgcttggaaagcttctcttctctctat 351  Q
    ||||||||||||||||| ||||| | | ||||| ||| | ||||| ||||||||||||||||| |||||    
T  41215868 acatctttaaccgattgcagatagggtaaaatccaagttgagtgcctggaaagcttctcttctatctat 41215800  T

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Target: chr3 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 302 - 397
Target Start/End: Original strand, 11965974 - 11966069
Alignment:
Q  302 gataagattaaatctaagcttagtgcttggaaagcttctcttctctctatagcatgaagagtcaccttagtgaaagcaatcattctaggtatgatg 397  Q
    ||||||||||| ||||||||| ||||||||||||| |||||| | ||||| | | | ||||||||  | ||||||||  | |||| ||||||||||    
T  11965974 gataagattaagtctaagcttggtgcttggaaagcctctcttttatctattgtagggagagtcactcttgtgaaagctgtgattcaaggtatgatg 11966069  T

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