View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15857_high_2 (Length: 308)

Name: NF15857_high_2
Description: NF15857
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15857_high_2
NF15857_high_2
[»] chr7 (14 HSPs)
chr7 (1-293)||(20274316-20274606)
chr7 (66-293)||(20285430-20285659)
chr7 (102-292)||(20167441-20167634)
chr7 (102-292)||(20244152-20244345)
chr7 (102-292)||(20248190-20248383)
chr7 (126-275)||(20264558-20264710)
chr7 (146-293)||(20295165-20295315)
chr7 (102-292)||(20232083-20232276)
chr7 (153-291)||(20289780-20289921)
chr7 (147-273)||(20304239-20304368)
chr7 (69-273)||(20280032-20280239)
chr7 (146-273)||(20061969-20062099)
chr7 (209-292)||(19939627-19939710)
chr7 (209-292)||(19970766-19970849)
[»] chr4 (1 HSPs)
chr4 (147-291)||(40823217-40823364)


Alignment Details
Target: chr7 (Bit Score: 238; Significance: 1e-132; HSPs: 14)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 238; E-Value: 1e-132
Query Start/End: Original strand, 1 - 293
Target Start/End: Complemental strand, 20274606 - 20274316
Alignment:
Q  1 atgcttgacctttctttttctagaattgaccacaaatctattgacctcaaaaacatttgttggagccttagtgtactatctgccacatgtttctgtcatg 100  Q
    ||||||||| ||||||||||||| |||||||||||||| | |||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||    
T  20274606 atgcttgacttttctttttctagcattgaccacaaatccactgacctcaaaaac--ttgttggagccttagtgtactatctgccacatgtttctgtcatg 20274509  T
Q  101 gtgacattgttgatggaactaacactttgacattcttcgggccagtttgaattcaacatattctgcctcaggatgaatgcaggtttactgggagcaagta 200  Q
    |||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  20274508 gtgacattgttgatggaactaacacttttacattcttcaggccagtttgaattcaacatattctgcctcaggatgaatgcaggtttactgggagcaagta 20274409  T
Q  201 atgcaccttcactgttcagcatagaaattactgcagcgatagtaggtctatctacagcaatttcttgtacacacagaagtgctatgtgtatgt 293  Q
    |||||||||||||||||||||||||||| |||||||| ||||| || ||||||||||||||||||||||||||||||||| ||||||||||||    
T  20274408 atgcaccttcactgttcagcatagaaatcactgcagccatagtgggcctatctacagcaatttcttgtacacacagaagtcctatgtgtatgt 20274316  T

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Target: chr7; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 66 - 293
Target Start/End: Complemental strand, 20285659 - 20285430
Alignment:
Q  66 ccttagtgtactatctgccacatgtttctgtcatggtgacattgttgatggaactaacactttgacattcttcgggccagtttgaattcaacatattctg 165  Q
    ||||||||| |||||||||||   ||||||| ||  ||||||||||||| ||||||||||||| | |||||||  |||| |||| ||||||| ||||||     
T  20285659 ccttagtgtgctatctgccacggatttctgtaatactgacattgttgatagaactaacactttcatattcttcatgccactttggattcaacgtattctt 20285560  T
Q  166 cctcaggatgaatgcaggtttactgg---gagcaagtaatgcaccttcactgttcagcatagaaattactgcagcgatagtaggtctatctacagcaatt 262  Q
    | |||||||||||||||||||||| |   ||| |||||||||| | ||  |||| |||||||||||||| ||||| ||| | || ||||||||||||  |    
T  20285559 catcaggatgaatgcaggtttactcggacgagaaagtaatgcagcatcgttgttaagcatagaaattaccgcagccata-tgggcctatctacagcatgt 20285461  T
Q  263 tcttgtacacacagaagtgctatgtgtatgt 293  Q
    |||||||| |||| |||| |||| |||||||    
T  20285460 tcttgtacgcacaaaagtcctatatgtatgt 20285430  T

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Target: chr7; HSP #3
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 102 - 292
Target Start/End: Original strand, 20167441 - 20167634
Alignment:
Q  102 tgacattgttgatggaactaacactttgacattcttcgggccagtttgaattcaacatattctgcctcaggatgaatgcaggtttactg---ggagcaag 198  Q
    ||||||| |||||||||| | || ||||||||||||| ||  | |||||||| |||||| ||| |||||||||||||||||||||||||   |||| |||    
T  20167441 tgacattattgatggaacaaccattttgacattcttcaggaaactttgaatttaacatactctccctcaggatgaatgcaggtttactgggaggaggaag 20167540  T
Q  199 taatgcaccttcactgttcagcatagaaattactgcagcgatagtaggtctatctacagcaatttcttgtacacacagaagtgctatgtgtatg 292  Q
    | |||||  ||||||||| |||||||||||||||||||| ||||  || ||||||   |||| ||||||| ||||||  ||| |||| ||||||    
T  20167541 tgatgcagtttcactgttaagcatagaaattactgcagccatagcgggcctatctttggcaagttcttgtgcacacaatagtcctatatgtatg 20167634  T

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Target: chr7; HSP #4
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 102 - 292
Target Start/End: Complemental strand, 20244345 - 20244152
Alignment:
Q  102 tgacattgttgatggaactaacactttgacattcttcgggccagtttgaattcaacatattctgcctcaggatgaatgcaggtttact---gggagcaag 198  Q
    ||||||| |||| ||||| | || ||||||||||||| |   | |||||||| |||||||||| ||||||||||||||||||||||||    |||| |||    
T  20244345 tgacattattgacggaacaaccattttgacattcttcagctaactttgaatttaacatattctccctcaggatgaatgcaggtttactaggaggaggaag 20244246  T
Q  199 taatgcaccttcactgttcagcatagaaattactgcagcgatagtaggtctatctacagcaatttcttgtacacacagaagtgctatgtgtatg 292  Q
    ||||| |  ||||||||| |||||||||||||||||||| ||||| || ||||||   |||| ||||||| ||||||  ||| |||| ||||||    
T  20244245 taatgaagtttcactgttaagcatagaaattactgcagccatagtgggcctatctttggcaagttcttgtgcacacaatagtcctatatgtatg 20244152  T

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Target: chr7; HSP #5
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 102 - 292
Target Start/End: Complemental strand, 20248383 - 20248190
Alignment:
Q  102 tgacattgttgatggaactaacactttgacattcttcgggccagtttgaattcaacatattctgcctcaggatgaatgcaggtttact---gggagcaag 198  Q
    ||||||| |||| ||||| | || ||||||||||||| |   | |||||||| |||||||||| ||||||||||||||||||||||||    |||| |||    
T  20248383 tgacattattgacggaacaaccattttgacattcttcagctaactttgaatttaacatattctccctcaggatgaatgcaggtttactaggaggaggaag 20248284  T
Q  199 taatgcaccttcactgttcagcatagaaattactgcagcgatagtaggtctatctacagcaatttcttgtacacacagaagtgctatgtgtatg 292  Q
    ||||| |  ||||||||| |||||||||||||||||||| ||||| || ||||||   |||| ||||||| ||||||  ||| |||| ||||||    
T  20248283 taatgaagtttcactgttaagcatagaaattactgcagccatagtgggcctatctttggcaagttcttgtgcacacaatagtcctatatgtatg 20248190  T

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Target: chr7; HSP #6
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 126 - 275
Target Start/End: Complemental strand, 20264710 - 20264558
Alignment:
Q  126 tttgacattcttcgggccagtttgaattcaacatattctgcctcaggatgaatgcaggtttact---gggagcaagtaatgcaccttcactgttcagcat 222  Q
    ||||||||||||||||| | |||||||| |||||| ||| ||||||||||||||||||||||||    |||| |||| |||||  ||||||||| |||||    
T  20264710 tttgacattcttcgggcaactttgaatttaacatactctccctcaggatgaatgcaggtttactaggaggaggaagtgatgcagtttcactgttaagcat 20264611  T
Q  223 agaaattactgcagcgatagtaggtctatctacagcaatttcttgtacacaca 275  Q
    ||||||||||||||| ||||  || ||||||   |||| ||||||| ||||||    
T  20264610 agaaattactgcagccatagcgggcctatctttggcaagttcttgtgcacaca 20264558  T

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Target: chr7; HSP #7
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 146 - 293
Target Start/End: Complemental strand, 20295315 - 20295165
Alignment:
Q  146 tttgaattcaacatattctgcctcaggatgaatgcaggtttactgggagca---agtaatgcaccttcactgttcagcatagaaattactgcagcgatag 242  Q
    |||||| |||||||||  |||||||||||||||||||||||||| |||| |   ||||||||| | |||||||| |||||||||||||||||||| ||||    
T  20295315 tttgaactcaacatatcttgcctcaggatgaatgcaggtttactaggaggaggaagtaatgcagcctcactgttaagcatagaaattactgcagccatag 20295216  T
Q  243 taggtctatctacagcaatttcttgtacacacagaagtgctatgtgtatgt 293  Q
      || ||||| ||||||  |||||| || |||| |||| |||| |||||||    
T  20295215 cgggcctatccacagcatgttcttgaacgcacaaaagtcctatatgtatgt 20295165  T

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Target: chr7; HSP #8
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 102 - 292
Target Start/End: Complemental strand, 20232276 - 20232083
Alignment:
Q  102 tgacattgttgatggaactaacactttgacattcttcgggccagtttgaattcaacatattctgcctcaggatgaatgcaggtttact---gggagcaag 198  Q
    ||||||| |||||||||| | || ||||||||||||| ||  | |||||||| |||||| ||| || ||| |||||||||||||||||    |||| |||    
T  20232276 tgacattattgatggaacaaccattttgacattcttcaggaaactttgaatttaacatactctcccacagaatgaatgcaggtttactaggaggaggaag 20232177  T
Q  199 taatgcaccttcactgttcagcatagaaattactgcagcgatagtaggtctatctacagcaatttcttgtacacacagaagtgctatgtgtatg 292  Q
    ||||| || ||||||||| |||||||||||||||| ||| ||||| || |||||| | |||  ||||||| ||||||  ||| |||| ||||||    
T  20232176 taatgaactttcactgttaagcatagaaattactgaagccatagtgggcctatctccggcacgttcttgtgcacacaatagtcctatatgtatg 20232083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 153 - 291
Target Start/End: Complemental strand, 20289921 - 20289780
Alignment:
Q  153 tcaacatattctgcctcaggatgaatgcaggtttactgggagca---agtaatgcaccttcactgttcagcatagaaattactgcagcgatagtaggtct 249  Q
    |||||||||| ||||||| ||| |||||||||| ||| |||| |   |||||| || | || ||||| |||||||||||||||||||| ||| |||| ||    
T  20289921 tcaacatattttgcctcaagataaatgcaggttgacttggaggaggaagtaattcagcctcgctgttaagcatagaaattactgcagccatattaggcct 20289822  T
Q  250 atctacagcaatttcttgtacacacagaagtgctatgtgtat 291  Q
     ||||||||||  |||||||||||||||||| | ||||||||    
T  20289821 gtctacagcaagctcttgtacacacagaagtccaatgtgtat 20289780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 147 - 273
Target Start/End: Complemental strand, 20304368 - 20304239
Alignment:
Q  147 ttgaattcaacatattctgcctcaggatgaatgcaggtttactgggagca---agtaatgcaccttcactgttcagcatagaaattactgcagcgatagt 243  Q
    ||||||||||| |||||||||||||||||||||| |||| ||| |||| |   || |||||| | |||||| | ||||||||||||||||  || |||||    
T  20304368 ttgaattcaacgtattctgcctcaggatgaatgctggttgacttggaggaggaagaaatgcatcctcactgataagcatagaaattactgtcgccatagt 20304269  T
Q  244 aggtctatctacagcaatttcttgtacaca 273  Q
    |||||||||||||||   ||||||||||||    
T  20304268 aggtctatctacagctgattcttgtacaca 20304239  T

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Target: chr7; HSP #11
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 69 - 273
Target Start/End: Complemental strand, 20280239 - 20280032
Alignment:
Q  69 tagtgtactatctgccacatgtttctgtcatggtgacattgttgatggaactaacactttgacattcttcgggccagtttgaattcaacatattctgcct 168  Q
    |||||| |||||| ||||||   ||||| ||  ||||||| || |||||||  ||| |||||  |||||| ||| | |||||||||||||||| ||||||    
T  20280239 tagtgtgctatctaccacataaatctgtaatactgacattattaatggaacagacaatttgattttcttcaggcgactttgaattcaacatatactgcct 20280140  T
Q  169 caggatgaatgcaggtttact---gggagcaagtaatgcaccttcactgttcagcatagaaattactgcagcgatagtaggtctatctacagcaatttct 265  Q
     |||||||||||||||| |||    |||| |||| ||||| | ||| |||| |||||||||||||||| ||| ||| |||| || ||||||||   ||||    
T  20280139 taggatgaatgcaggttgacttggaggaggaagtgatgcaacctcattgttaagcatagaaattactgtagccatattaggcctgtctacagccgattct 20280040  T
Q  266 tgtacaca 273  Q
    ||||||||    
T  20280039 tgtacaca 20280032  T

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Target: chr7; HSP #12
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 146 - 273
Target Start/End: Original strand, 20061969 - 20062099
Alignment:
Q  146 tttgaattcaacatattctgcctcaggatgaatgcaggtttact---gggagcaagtaatgcaccttcactgttcagcatagaaattactgcagcgatag 242  Q
    ||||||||||||| |||||||||||||||||||||||||| |||    |||| |||| ||||| | |||||||| |||||||||||||||| ||| |||     
T  20061969 tttgaattcaacaaattctgcctcaggatgaatgcaggttgacttggaggaggaagtgatgcaacctcactgttaagcatagaaattactgtagccatat 20062068  T
Q  243 taggtctatctacagcaatttcttgtacaca 273  Q
    |||| || ||||| ||   ||||||||||||    
T  20062069 taggcctgtctacggccgattcttgtacaca 20062099  T

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Target: chr7; HSP #13
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 209 - 292
Target Start/End: Complemental strand, 19939710 - 19939627
Alignment:
Q  209 tcactgttcagcatagaaattactgcagcgatagtaggtctatctacagcaatttcttgtacacacagaagtgctatgtgtatg 292  Q
    ||||||||||||||||||||||| || || || |||||||| ||||  | || ||| |||||||| |||||  |||||||||||    
T  19939710 tcactgttcagcatagaaattacagccgccatggtaggtctgtctatggaaaattcctgtacacatagaagccctatgtgtatg 19939627  T

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Target: chr7; HSP #14
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 209 - 292
Target Start/End: Complemental strand, 19970849 - 19970766
Alignment:
Q  209 tcactgttcagcatagaaattactgcagcgatagtaggtctatctacagcaatttcttgtacacacagaagtgctatgtgtatg 292  Q
    ||||||||||||||||||||||| || || || |||||||| ||||  | || ||| |||||||| |||||  |||||||||||    
T  19970849 tcactgttcagcatagaaattacagccgccatggtaggtctgtctatggaaaattcctgtacacatagaagccctatgtgtatg 19970766  T

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Target: chr4 (Bit Score: 50; Significance: 1e-19; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 147 - 291
Target Start/End: Original strand, 40823217 - 40823364
Alignment:
Q  147 ttgaattcaacatattctgcctcaggatgaatgcaggtttactgggagca---agtaatgcaccttcactgttcagcatagaaattactgcagcgatagt 243  Q
    ||||| |||||||||| ||||||| ||| |||||||||| ||| |||| |   |||||| ||   |||||||| ||||||||||||||||| || ||| |    
T  40823217 ttgaactcaacatattttgcctcaagataaatgcaggttgacttggaggaggaagtaattcagtctcactgttaagcatagaaattactgctgccatatt 40823316  T
Q  244 aggtctatctacagcaatttcttgtacacacagaagtgctatgtgtat 291  Q
    ||| || ||||||||||  |||||||||||||||||| | ||||||||    
T  40823317 aggcctgtctacagcaagctcttgtacacacagaagtccaatgtgtat 40823364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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