View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15857_high_3 (Length: 254)
Name: NF15857_high_3
Description: NF15857
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15857_high_3 |
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Alignment Details
Target: chr7 (Bit Score: 120; Significance: 2e-61; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 1 - 243
Target Start/End: Original strand, 39797861 - 39798123
Alignment:
| Q |
1 |
ttgtatgttttatcctttgcttccaacagattaatattagcgtcactttctttatcaatatnnnnnnnnnnnnnnnnnnnnnctgattaaaatggtataa |
100 |
Q |
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| T |
39797861 |
ttgtatgttttatcctttgcttccaacattttaatattagcgtcactttctttatcaatataaaaaaaaaaaaaaaaaaaa-ctgattaaaatggtataa |
39797959 |
T |
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| Q |
101 |
taagaaaagattctctgaaaatgcgctctaatgaacttatggtggagctctgttta---------------------tttatcataaaataacatgtact |
179 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
39797960 |
taagaaaagattctctgaaaatgcgctctaatgaacttatggtggagctctgtttatttcagccagtgcgccttttatttatcataaaataacatgtact |
39798059 |
T |
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| Q |
180 |
cgatctaaaattacgcataaacgtgcatgttcccgatgtataatgtataccaatatcaattctt |
243 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39798060 |
cgatctaaaattacgcataaacgtgcatgttcccgatgtataatgtataccaatatcaattctt |
39798123 |
T |
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