View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15857_low_1 (Length: 375)
Name: NF15857_low_1
Description: NF15857
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15857_low_1 |
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Alignment Details
Target: chr3 (Bit Score: 348; Significance: 0; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 348; E-Value: 0
Query Start/End: Original strand, 11 - 366
Target Start/End: Original strand, 28914768 - 28915123
Alignment:
| Q |
11 |
gtgagatgaaaagacaggccctaataaccatgtggagatatagctttctataatttctacaatggaataaatagacgttgacatcaatgtcgaagagtca |
110 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28914768 |
gtgaaatgaaaagacaggccctaataaccatgtggagatatagctttctataatttctacaatggaataaatagacgttgacatcaatgtcgaagagtca |
28914867 |
T |
|
| Q |
111 |
aaacatgtattggctactacctttacattttaattaccaaacgaaaaaatgaatattagattttatcaagcatgtgttcaggtgaggatctgttgcattt |
210 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28914868 |
aaacatgtgttggctactacctttacattttaattaccaaacgaaaaaatgaatattagattttatcaagcatgtgttcaggtgaggatctgttgcattt |
28914967 |
T |
|
| Q |
211 |
atatttcaggcaaaagaatagttgaaacaagtgaatagcattaatttaatgcttgattgcaaagaaattggtatatcagtagactagtagatagctacaa |
310 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28914968 |
atatttcaggcaaaagaatagttgaaacaagtgaatagcattaatttaatgcttgattgcaaagaaattggtatatcagtagactagtagatagctacaa |
28915067 |
T |
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| Q |
311 |
aaattaatatcctctagcttaagtctcaaacttgatctatggatacctgatgatgt |
366 |
Q |
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| T |
28915068 |
aaattaatatcctctagcttaagtctcaaacttgatctatggatacctgatgatgt |
28915123 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 17 - 285
Target Start/End: Original strand, 28924004 - 28924272
Alignment:
| Q |
17 |
tgaaaagacaggccctaataaccatgtggagatatagctttctataatttctacaatggaataaatagacgttgacatcaatgtcgaagagtcaaaacat |
116 |
Q |
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|||||||||| ||||||||||||||||||| |||||||||||||| ||||||||||||||| |||||||| ||||| |||||||| |||||||||||||| |
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| T |
28924004 |
tgaaaagacatgccctaataaccatgtggacatatagctttctatgatttctacaatggaagaaatagactttgacttcaatgtcaaagagtcaaaacat |
28924103 |
T |
|
| Q |
117 |
gtattggctactacctttacattttaattaccaaacgaaaaaatgaatattagattttatcaagcatgtgttcaggtgaggatctgttgcatttatattt |
216 |
Q |
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| | |||||||||||||||||||||||||| ||||| ||| ||||||||||||||||||||||||||||| | ||||||||||||||| ||||||||||| |
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| T |
28924104 |
gcactggctactacctttacattttaattatcaaacaaaataatgaatattagattttatcaagcatgtggtaaggtgaggatctgttacatttatattt |
28924203 |
T |
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| Q |
217 |
caggcaaaagaatagttgaaacaagtgaatagcattaatttaatgcttgattgcaaagaaattggtata |
285 |
Q |
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||||||||||||||||||||||||||||| ||||||||||||| ||| |||| |||||||||||||| |
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| T |
28924204 |
caggcaaaagaatagttgaaacaagtgaacagcattaatttaaggctagattttgaagaaattggtata |
28924272 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 161; E-Value: 9e-86
Query Start/End: Original strand, 19 - 362
Target Start/End: Original strand, 28900342 - 28900684
Alignment:
| Q |
19 |
aaaagacaggccctaataaccatgtggagatatagctttctataatttctacaatggaataaat-agacgttgacatcaatgtcgaagagtcaaaacatg |
117 |
Q |
| |
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|||||||| ||| |||||||||| ||||||||||||||||||| ||||||||||| ||| |||| |||| || | ||| ||| |||||||||||| ||| |
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| T |
28900342 |
aaaagacaagccttaataaccatttggagatatagctttctatgatttctacaattgaagaaattagacatttgcttcattgttgaagagtcaaaa-atg |
28900440 |
T |
|
| Q |
118 |
tattggctactacctttacattttaattaccaaacgaaaaaatgaatattagattttatcaagcatgtgttcaggtgaggatctgttgcatttatatttc |
217 |
Q |
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|||||||||||||||| |||| ||||||||||||| || ||||||| | ||||||||||||||||||| | |||||||| ||||||||||||||||||| |
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| T |
28900441 |
tattggctactaccttaacatgttaattaccaaacaaagtaatgaatttaagattttatcaagcatgtggtaaggtgagggtctgttgcatttatatttc |
28900540 |
T |
|
| Q |
218 |
aggcaaaagaatagttgaaacaagtgaatagcattaatttaatgcttgattgcaaagaaattggtatatcagtagactagtagatagctacaaaaattaa |
317 |
Q |
| |
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|||||||||||||||||||||||||| ||| || |||| || ||| |||| |||||||||||||| || ||||| |||||||||| |||| ||||| |
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| T |
28900541 |
-ggcaaaagaatagttgaaacaagtgactaggataaattaaaggctagattttgaagaaattggtataatagaagactcgtagatagctgcaaatattaa |
28900639 |
T |
|
| Q |
318 |
tatcctctagcttaagtctcaaacttgatctatggatacctgatg |
362 |
Q |
| |
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||| |||||||||| ||||||| |||||||||||||||||||||| |
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| T |
28900640 |
tatactctagcttatgtctcaagcttgatctatggatacctgatg |
28900684 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 11 - 362
Target Start/End: Original strand, 28932867 - 28933225
Alignment:
| Q |
11 |
gtgagatgaaaagacaggccctaataaccatgtggagatatagctttctataatttctacaatggaataaatag-------ac-gttgacatcaatgtcg |
102 |
Q |
| |
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||||| ||||||||||||| |||||||||||| |||||||||||||||| ||| ||||||||||| |||| | || |||||| |||| | | |
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| T |
28932867 |
gtgaggtgaaaagacaggctctaataaccatgcatagatatagctttctatgattactacaatggaagaaattgggctttgacagttgacttcaacgcag |
28932966 |
T |
|
| Q |
103 |
aagagtcaaaacatgtattggctactacctttacattttaa-ttaccaaacgaaaaaatgaatattagattttatcaagcatgtgttcaggtgaggatct |
201 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||| ||||||| | | || ||||| || |||| ||||| |||||||| | ||| | ||| |
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| T |
28932967 |
aagagtcaaaacatgtattggctactacctttacattttaacttaccaagc-ataatatgaacatgagatattatccagcatgtggtaaggcatgaatcc |
28933065 |
T |
|
| Q |
202 |
gttgcatttatatttcaggcaaaagaatagttgaaacaagtgaatagcattaatttaatgcttgattgcaaagaaattggtatatcagtagactagtaga |
301 |
Q |
| |
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||||||||||||| ||||||||||||||||| ||||| | |||||||||||| || | | |||| |||||||||||||| |||||||||||||| |
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| T |
28933066 |
attgcatttatatt-caggcaaaagaatagtttaaacatgcgaatagcattaaccgaaggatagattttgaagaaattggtatagtagtagactagtaga |
28933164 |
T |
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| Q |
302 |
tagctacaaaaattaatatcctctagcttaagtctcaaacttgatctatggatacctgatg |
362 |
Q |
| |
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|||||| ||| ||||| || ||||||||||||||||||||||||||||||||||||||||| |
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| T |
28933165 |
tagctataaatattaaaatactctagcttaagtctcaaacttgatctatggatacctgatg |
28933225 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 314 - 362
Target Start/End: Original strand, 28924286 - 28924334
Alignment:
| Q |
314 |
ttaatatcctctagcttaagtctcaaacttgatctatggatacctgatg |
362 |
Q |
| |
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||||||| ||| ||||||| |||||| |||||| ||||||||||||||| |
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| T |
28924286 |
ttaatatgctccagcttaaatctcaatcttgatatatggatacctgatg |
28924334 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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