View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15857_low_2 (Length: 362)
Name: NF15857_low_2
Description: NF15857
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15857_low_2 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 278; Significance: 1e-155; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 278; E-Value: 1e-155
Query Start/End: Original strand, 17 - 349
Target Start/End: Complemental strand, 5921051 - 5920718
Alignment:
| Q |
17 |
tctcaaaaacctactaggtattgcaccttttgtcacaagactaatcacacagttgatttttgttatcaaagacatggccaccctagttttcctaagcaac |
116 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||| ||||||||||||||||||||| |
|
|
| T |
5921051 |
tctcaaaaacctactacgtattgcaccttttgtcacaagactaatcacacaattgatttttgttatcaaaaacatggctaccctagttttcctaagcaac |
5920952 |
T |
|
| Q |
117 |
aatctagagtaaatgcagctactcatgagatccttgatgaaaatggtgcattggatcatggtttggggggctctacaggttctggtacttgtttgtctcc |
216 |
Q |
| |
|
|||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
5920951 |
aatcaagaggaaatgcagctactcatgagatccttgatgaaaatggtgcattggatcatggtttggggggctctacaggttctggtacctgtttgtctcc |
5920852 |
T |
|
| Q |
217 |
agagcaatatactcaacttgtttcc-ttgctacaacatgctagtttggtttcctcatcatctctcccttctacttcaaatgccaccaccaaccatgtcca |
315 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||| || ||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||| |
|
|
| T |
5920851 |
agagcaatatactcaacttgtttcctttgctacaacaggcaagtttggtttcctcatcatctctcccttctacttcaaattccaccaccaaccatatcca |
5920752 |
T |
|
| Q |
316 |
agtcactccttttgtttctattagcatctctgct |
349 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||| |
|
|
| T |
5920751 |
agtcactccttttgtttctactagcatctctgct |
5920718 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 207 - 264
Target Start/End: Original strand, 26968721 - 26968778
Alignment:
| Q |
207 |
gtttgtctccagagcaatatactcaacttgtttccttgctacaacatgctagtttggt |
264 |
Q |
| |
|
|||| |||| |||||||||| ||||||| ||||||||||||||||| ||||||||||| |
|
|
| T |
26968721 |
gtttatctcaagagcaatatgctcaactagtttccttgctacaacaggctagtttggt |
26968778 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 203; Significance: 1e-111; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 17 - 333
Target Start/End: Complemental strand, 20325356 - 20325043
Alignment:
| Q |
17 |
tctcaaaaacctactaggtattgcaccttttgtcacaagactaatcacacagttgatttttgttatcaaagacatggccaccctagttttcctaagcaac |
116 |
Q |
| |
|
||||||||||||| |||||| ||||| ||||||||||| |||||||||||||||||||||||||||||| |||||| || ||||||||||||||||||| |
|
|
| T |
20325356 |
tctcaaaaacctaataggtactgcactttttgtcacaaaactaatcacacagttgatttttgttatcaactacatggtcatcctagttttcctaagcaac |
20325257 |
T |
|
| Q |
117 |
aatctagagtaaatgcagctactcatgagatccttgatgaaaatggtgcattggatcatggtttggggggctctacaggttctggtacttgtttgtctcc |
216 |
Q |
| |
|
|||||| ||| | ||| | |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
20325256 |
aatctaaagtgactgc---ttctcatgagatccctgatgaaaatggtgcattggatcatggtttggggggctctacaggttctggtactagtttgtctcc |
20325160 |
T |
|
| Q |
217 |
agagcaatatactcaacttgtttccttgctacaacatgctagtttggtttcctcatcatctctcccttctacttcaaatgccaccaccaaccatgtccaa |
316 |
Q |
| |
|
|||||||||||||||||||||||||||||| || || ||||||||| ||||||||||||||| ||| ||||||||||||| |||||||| ||||||||| |
|
|
| T |
20325159 |
agagcaatatactcaacttgtttccttgctgcagcaggctagtttgatttcctcatcatctcctcctcctacttcaaatgctaccaccaatcatgtccaa |
20325060 |
T |
|
| Q |
317 |
gtcactccttttgtttc |
333 |
Q |
| |
|
||||||||||||||| |
|
|
| T |
20325059 |
accactccttttgtttc |
20325043 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University