View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15858_high_13 (Length: 286)
Name: NF15858_high_13
Description: NF15858
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15858_high_13 |
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Alignment Details
Target: chr7 (Bit Score: 107; Significance: 1e-53; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 117 - 278
Target Start/End: Original strand, 25233554 - 25233722
Alignment:
| Q |
117 |
caaccacataaactacgccttgagaacattgttgagcatcaatgacatgcttaacttcttgtttatcccaaaaacttgtttacgagataaaag------- |
209 |
Q |
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| T |
25233554 |
caaccacataaactacgccttgagaacattgttgagcatcaatgacatgtctgactacttgtttatcccaaaaacttgtttacgagatgaaagttcgcac |
25233653 |
T |
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| Q |
210 |
ttggcactcacttattactgtgattatgtcaaactcaacgtgattttaaatacgctctaatcctttgct |
278 |
Q |
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| T |
25233654 |
ttgacactcacttattattgtgattatgtcaaactcaatgtgattttaaacacgctctaatcctttgct |
25233722 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 16 - 119
Target Start/End: Original strand, 25232652 - 25232754
Alignment:
| Q |
16 |
ttatcatgttttaaaattcttgtgtcaaattcaatttccttaaagnnnnnnntacttaataccatatgaaaattaggtagcatttttgtatttttgagtg |
115 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| | |||||||||| ||||||||||||||||||||||||||||| ||||||| |
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| T |
25232652 |
ttatcatgttttaaaattcttgtgtcaaattcaatttccttaa-gaaaaaaatacttaatactatatgaaaattaggtagcatttttgtattgttgagtg |
25232750 |
T |
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| Q |
116 |
tcaa |
119 |
Q |
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|||| |
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| T |
25232751 |
tcaa |
25232754 |
T |
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