View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15858_high_16 (Length: 232)

Name: NF15858_high_16
Description: NF15858
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15858_high_16
NF15858_high_16
[»] chr3 (21 HSPs)
chr3 (5-53)||(52939643-52939691)
chr3 (63-111)||(3666863-3666911)
chr3 (5-45)||(36671047-36671087)
chr3 (14-45)||(19150361-19150392)
chr3 (6-44)||(5114077-5114115)
chr3 (14-44)||(38359348-38359378)
chr3 (17-51)||(49886686-49886720)
chr3 (16-49)||(7351682-7351715)
chr3 (6-43)||(7668221-7668258)
chr3 (5-46)||(20548023-20548064)
chr3 (15-44)||(27198203-27198232)
chr3 (6-54)||(39350605-39350654)
chr3 (15-44)||(39901590-39901619)
chr3 (16-49)||(41448220-41448253)
chr3 (5-46)||(46623904-46623945)
chr3 (5-44)||(9159068-9159108)
chr3 (17-45)||(27646496-27646524)
chr3 (15-47)||(36869880-36869912)
chr3 (15-43)||(42102236-42102264)
chr3 (16-44)||(49361868-49361896)
chr3 (16-44)||(50745559-50745587)
[»] chr1 (20 HSPs)
chr1 (5-44)||(12657221-12657260)
chr1 (5-51)||(45333562-45333608)
chr1 (5-44)||(30535990-30536030)
chr1 (5-44)||(35369699-35369738)
chr1 (14-48)||(25989026-25989060)
chr1 (14-44)||(44672072-44672102)
chr1 (6-44)||(44730642-44730680)
chr1 (7-44)||(8828156-8828193)
chr1 (5-49)||(26159435-26159480)
chr1 (8-45)||(41677360-41677397)
chr1 (14-43)||(42615860-42615889)
chr1 (14-43)||(49931553-49931582)
chr1 (5-40)||(835874-835910)
chr1 (5-44)||(1100216-1100256)
chr1 (17-45)||(27563482-27563510)
chr1 (15-55)||(30467569-30467609)
chr1 (6-46)||(34157517-34157557)
chr1 (15-43)||(40238438-40238466)
chr1 (5-53)||(46300729-46300777)
chr1 (17-49)||(51168813-51168845)
[»] chr7 (14 HSPs)
chr7 (5-50)||(1709277-1709323)
chr7 (5-44)||(42552898-42552938)
chr7 (17-51)||(19426572-19426606)
chr7 (6-44)||(22918475-22918513)
chr7 (5-43)||(38861096-38861134)
chr7 (15-48)||(46148161-46148194)
chr7 (6-45)||(9031203-9031243)
chr7 (7-43)||(11325898-11325934)
chr7 (6-46)||(12102743-12102783)
chr7 (5-49)||(25192917-25192961)
chr7 (5-44)||(27070700-27070740)
chr7 (5-44)||(27207573-27207613)
chr7 (5-44)||(41538481-41538521)
chr7 (14-46)||(42467201-42467233)
[»] chr4 (27 HSPs)
chr4 (1-46)||(15638158-15638204)
chr4 (5-46)||(29175224-29175265)
chr4 (1-45)||(51107469-51107514)
chr4 (15-47)||(31559534-31559566)
chr4 (5-48)||(56474796-56474840)
chr4 (6-44)||(22893868-22893907)
chr4 (6-44)||(22945536-22945575)
chr4 (5-44)||(38134352-38134391)
chr4 (5-44)||(40348793-40348832)
chr4 (7-53)||(4106044-4106090)
chr4 (6-40)||(38376525-38376559)
chr4 (6-43)||(40335789-40335827)
chr4 (5-43)||(46634100-46634138)
chr4 (6-44)||(55510859-55510897)
chr4 (5-42)||(336840-336877)
chr4 (5-49)||(4577551-4577596)
chr4 (17-50)||(9828017-9828050)
chr4 (15-48)||(12387697-12387730)
chr4 (16-49)||(41010202-41010235)
chr4 (17-46)||(50980599-50980628)
chr4 (5-45)||(54801519-54801560)
chr4 (15-47)||(8481664-8481696)
chr4 (16-48)||(22007828-22007860)
chr4 (21-53)||(31804378-31804410)
chr4 (5-45)||(36177904-36177944)
chr4 (1-44)||(36728650-36728694)
chr4 (16-44)||(50291281-50291309)
[»] chr2 (24 HSPs)
chr2 (14-48)||(34913087-34913121)
chr2 (5-46)||(9207587-9207628)
chr2 (6-46)||(1573702-1573742)
chr2 (7-43)||(11164410-11164446)
chr2 (15-47)||(43820784-43820816)
chr2 (16-47)||(12256897-12256928)
chr2 (17-48)||(22353209-22353240)
chr2 (14-61)||(24766134-24766181)
chr2 (5-43)||(30416360-30416399)
chr2 (14-45)||(44058729-44058760)
chr2 (5-46)||(14871637-14871679)
chr2 (7-52)||(22296152-22296198)
chr2 (14-43)||(3771371-3771400)
chr2 (16-45)||(11152743-11152772)
chr2 (5-45)||(38571937-38571978)
chr2 (6-42)||(8555324-8555360)
chr2 (24-52)||(13553138-13553166)
chr2 (5-45)||(18254242-18254282)
chr2 (19-51)||(26387906-26387938)
chr2 (1-44)||(29168724-29168768)
chr2 (16-44)||(34141441-34141469)
chr2 (6-42)||(34945124-34945160)
chr2 (15-43)||(41868413-41868441)
chr2 (14-50)||(45420128-45420164)
[»] chr8 (16 HSPs)
chr8 (7-47)||(7010681-7010722)
chr8 (17-54)||(36064019-36064056)
chr8 (5-45)||(9227267-9227307)
chr8 (5-45)||(38578397-38578437)
chr8 (5-44)||(10692438-10692477)
chr8 (5-51)||(40649442-40649489)
chr8 (14-44)||(29107994-29108024)
chr8 (14-44)||(35792068-35792098)
chr8 (6-43)||(41406889-41406927)
chr8 (16-45)||(18549977-18550006)
chr8 (6-43)||(32501230-32501267)
chr8 (17-46)||(44068716-44068745)
chr8 (5-44)||(11584095-11584135)
chr8 (14-50)||(12339200-12339236)
chr8 (15-43)||(13884203-13884231)
chr8 (16-44)||(20996191-20996219)
[»] scaffold0154 (1 HSPs)
scaffold0154 (6-45)||(9881-9921)
[»] chr6 (9 HSPs)
chr6 (5-52)||(5570366-5570413)
chr6 (17-48)||(30714675-30714706)
chr6 (5-54)||(1156710-1156759)
chr6 (15-44)||(3180035-3180064)
chr6 (17-50)||(31417341-31417374)
chr6 (16-45)||(34792020-34792049)
chr6 (5-44)||(2242054-2242094)
chr6 (17-45)||(7636473-7636501)
chr6 (6-49)||(34490341-34490385)
[»] chr5 (10 HSPs)
chr5 (5-44)||(1079985-1080024)
chr5 (5-44)||(7076601-7076640)
chr5 (14-48)||(11881029-11881063)
chr5 (5-43)||(22649694-22649732)
chr5 (6-43)||(15479469-15479506)
chr5 (6-43)||(39807748-39807785)
chr5 (11-43)||(1764224-1764256)
chr5 (15-43)||(8681843-8681871)
chr5 (15-43)||(17063865-17063893)
chr5 (16-44)||(34693260-34693288)
[»] scaffold0199 (1 HSPs)
scaffold0199 (5-45)||(8666-8706)
[»] scaffold0024 (1 HSPs)
scaffold0024 (5-40)||(48657-48693)


Alignment Details
Target: chr3 (Bit Score: 37; Significance: 0.000000000005; HSPs: 21)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 5 - 53
Target Start/End: Complemental strand, 52939691 - 52939643
Alignment:
Q  5 caaaaattgtaaaaaatgattgtacaaatatcatttctctattttttat 53  Q
    ||||| |||||||||||| |||| |||||||||||||||||||||||||    
T  52939691 caaaagttgtaaaaaatggttgttcaaatatcatttctctattttttat 52939643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 63 - 111
Target Start/End: Complemental strand, 3666911 - 3666863
Alignment:
Q  63 actaatacttaattattcatgttataataccctccccttcaaacatcct 111  Q
    |||| ||||||||||||| ||| ||||||||||||| ||||||||||||    
T  3666911 actagtacttaattattcctgtgataataccctccctttcaaacatcct 3666863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 5 - 45
Target Start/End: Original strand, 36671047 - 36671087
Alignment:
Q  5 caaaaattgtaaaaaatgattgtacaaatatcatttctcta 45  Q
    |||||||||||||||||| |||| |||||||||||||||||    
T  36671047 caaaaattgtaaaaaatggttgttcaaatatcatttctcta 36671087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 14 - 45
Target Start/End: Original strand, 19150361 - 19150392
Alignment:
Q  14 taaaaaatgattgtacaaatatcatttctcta 45  Q
    ||||||||||||||||||||||||||||||||    
T  19150361 taaaaaatgattgtacaaatatcatttctcta 19150392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 6 - 44
Target Start/End: Complemental strand, 5114115 - 5114077
Alignment:
Q  6 aaaaattgtaaaaaatgattgtacaaatatcatttctct 44  Q
    ||||||||||||||||| |||| ||||||||||||||||    
T  5114115 aaaaattgtaaaaaatggttgttcaaatatcatttctct 5114077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 14 - 44
Target Start/End: Original strand, 38359348 - 38359378
Alignment:
Q  14 taaaaaatgattgtacaaatatcatttctct 44  Q
    |||||||||||||||||||||||||||||||    
T  38359348 taaaaaatgattgtacaaatatcatttctct 38359378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 17 - 51
Target Start/End: Complemental strand, 49886720 - 49886686
Alignment:
Q  17 aaaatgattgtacaaatatcatttctctatttttt 51  Q
    |||||| ||||||||||||||||||||||||||||    
T  49886720 aaaatggttgtacaaatatcatttctctatttttt 49886686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 16 - 49
Target Start/End: Original strand, 7351682 - 7351715
Alignment:
Q  16 aaaaatgattgtacaaatatcatttctctatttt 49  Q
    ||||||| ||||||||||||||||||||||||||    
T  7351682 aaaaatggttgtacaaatatcatttctctatttt 7351715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 6 - 43
Target Start/End: Original strand, 7668221 - 7668258
Alignment:
Q  6 aaaaattgtaaaaaatgattgtacaaatatcatttctc 43  Q
    |||| ||||||||||||||||| |||||||||||||||    
T  7668221 aaaagttgtaaaaaatgattgttcaaatatcatttctc 7668258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 5 - 46
Target Start/End: Original strand, 20548023 - 20548064
Alignment:
Q  5 caaaaattgtaaaaaatgattgtacaaatatcatttctctat 46  Q
    ||||| ||||||||| ||||||| ||||||||||||||||||    
T  20548023 caaaagttgtaaaaactgattgttcaaatatcatttctctat 20548064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 15 - 44
Target Start/End: Original strand, 27198203 - 27198232
Alignment:
Q  15 aaaaaatgattgtacaaatatcatttctct 44  Q
    ||||||||||||||||||||||||||||||    
T  27198203 aaaaaatgattgtacaaatatcatttctct 27198232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 6 - 54
Target Start/End: Original strand, 39350605 - 39350654
Alignment:
Q  6 aaaaattgt-aaaaaatgattgtacaaatatcatttctctattttttata 54  Q
    ||||||||| ||||||| ||||||||||||||||||||||  ||||||||    
T  39350605 aaaaattgttaaaaaataattgtacaaatatcatttctcttctttttata 39350654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 15 - 44
Target Start/End: Complemental strand, 39901619 - 39901590
Alignment:
Q  15 aaaaaatgattgtacaaatatcatttctct 44  Q
    ||||||||||||||||||||||||||||||    
T  39901619 aaaaaatgattgtacaaatatcatttctct 39901590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 16 - 49
Target Start/End: Original strand, 41448220 - 41448253
Alignment:
Q  16 aaaaatgattgtacaaatatcatttctctatttt 49  Q
    ||||||| ||||||||||||||||||||||||||    
T  41448220 aaaaatggttgtacaaatatcatttctctatttt 41448253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 5 - 46
Target Start/End: Complemental strand, 46623945 - 46623904
Alignment:
Q  5 caaaaattgtaaaaaatgattgtacaaatatcatttctctat 46  Q
    ||||| |||||||||||| |||| ||||||||||||||||||    
T  46623945 caaaagttgtaaaaaatggttgttcaaatatcatttctctat 46623904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 5 - 44
Target Start/End: Original strand, 9159068 - 9159108
Alignment:
Q  5 caaaaattgta-aaaaatgattgtacaaatatcatttctct 44  Q
    ||||||||||| ||||||| |||||||||||||||||||||    
T  9159068 caaaaattgtacaaaaatggttgtacaaatatcatttctct 9159108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 17 - 45
Target Start/End: Complemental strand, 27646524 - 27646496
Alignment:
Q  17 aaaatgattgtacaaatatcatttctcta 45  Q
    |||||||||||||||||||||||||||||    
T  27646524 aaaatgattgtacaaatatcatttctcta 27646496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 15 - 47
Target Start/End: Original strand, 36869880 - 36869912
Alignment:
Q  15 aaaaaatgattgtacaaatatcatttctctatt 47  Q
    |||||||| ||||||||||||||||||||||||    
T  36869880 aaaaaatggttgtacaaatatcatttctctatt 36869912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 15 - 43
Target Start/End: Complemental strand, 42102264 - 42102236
Alignment:
Q  15 aaaaaatgattgtacaaatatcatttctc 43  Q
    |||||||||||||||||||||||||||||    
T  42102264 aaaaaatgattgtacaaatatcatttctc 42102236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 16 - 44
Target Start/End: Original strand, 49361868 - 49361896
Alignment:
Q  16 aaaaatgattgtacaaatatcatttctct 44  Q
    |||||||||||||||||||||||||||||    
T  49361868 aaaaatgattgtacaaatatcatttctct 49361896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 16 - 44
Target Start/End: Complemental strand, 50745587 - 50745559
Alignment:
Q  16 aaaaatgattgtacaaatatcatttctct 44  Q
    |||||||||||||||||||||||||||||    
T  50745587 aaaaatgattgtacaaatatcatttctct 50745559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 36; Significance: 0.00000000002; HSPs: 20)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 5 - 44
Target Start/End: Complemental strand, 12657260 - 12657221
Alignment:
Q  5 caaaaattgtaaaaaatgattgtacaaatatcatttctct 44  Q
    ||||||||||||||||||||||| ||||||||||||||||    
T  12657260 caaaaattgtaaaaaatgattgttcaaatatcatttctct 12657221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 5 - 51
Target Start/End: Complemental strand, 45333608 - 45333562
Alignment:
Q  5 caaaaattgtaaaaaatgattgtacaaatatcatttctctatttttt 51  Q
    ||||| ||||||||||||||||| |||||||||||||||||| ||||    
T  45333608 caaaagttgtaaaaaatgattgttcaaatatcatttctctatatttt 45333562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 5 - 44
Target Start/End: Complemental strand, 30536030 - 30535990
Alignment:
Q  5 caaaaattgt-aaaaaatgattgtacaaatatcatttctct 44  Q
    |||||||||| ||||||||||||||||||||||||||||||    
T  30536030 caaaaattgttaaaaaatgattgtacaaatatcatttctct 30535990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 5 - 44
Target Start/End: Complemental strand, 35369738 - 35369699
Alignment:
Q  5 caaaaattgtaaaaaatgattgtacaaatatcatttctct 44  Q
    ||||| ||||||||||||||||| ||||||||||||||||    
T  35369738 caaaagttgtaaaaaatgattgttcaaatatcatttctct 35369699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 14 - 48
Target Start/End: Original strand, 25989026 - 25989060
Alignment:
Q  14 taaaaaatgattgtacaaatatcatttctctattt 48  Q
    ||||||||| |||||||||||||||||||||||||    
T  25989026 taaaaaatggttgtacaaatatcatttctctattt 25989060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 14 - 44
Target Start/End: Original strand, 44672072 - 44672102
Alignment:
Q  14 taaaaaatgattgtacaaatatcatttctct 44  Q
    |||||||||||||||||||||||||||||||    
T  44672072 taaaaaatgattgtacaaatatcatttctct 44672102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 6 - 44
Target Start/End: Complemental strand, 44730680 - 44730642
Alignment:
Q  6 aaaaattgtaaaaaatgattgtacaaatatcatttctct 44  Q
    ||||||| ||||||||| |||||||||||||||||||||    
T  44730680 aaaaattataaaaaatggttgtacaaatatcatttctct 44730642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 7 - 44
Target Start/End: Original strand, 8828156 - 8828193
Alignment:
Q  7 aaaattgtaaaaaatgattgtacaaatatcatttctct 44  Q
    |||||||| |||||||||||| ||||||||||||||||    
T  8828156 aaaattgtcaaaaatgattgttcaaatatcatttctct 8828193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 5 - 49
Target Start/End: Complemental strand, 26159480 - 26159435
Alignment:
Q  5 caaaaattgt-aaaaaatgattgtacaaatatcatttctctatttt 49  Q
    |||||||||| ||||||||||||| |||||||||||||||| ||||    
T  26159480 caaaaattgtcaaaaaatgattgttcaaatatcatttctctttttt 26159435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 8 - 45
Target Start/End: Original strand, 41677360 - 41677397
Alignment:
Q  8 aaattgtaaaaaatgattgtacaaatatcatttctcta 45  Q
    ||||| |||||||||||||| |||||||||||||||||    
T  41677360 aaattataaaaaatgattgttcaaatatcatttctcta 41677397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 14 - 43
Target Start/End: Complemental strand, 42615889 - 42615860
Alignment:
Q  14 taaaaaatgattgtacaaatatcatttctc 43  Q
    ||||||||||||||||||||||||||||||    
T  42615889 taaaaaatgattgtacaaatatcatttctc 42615860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 14 - 43
Target Start/End: Complemental strand, 49931582 - 49931553
Alignment:
Q  14 taaaaaatgattgtacaaatatcatttctc 43  Q
    ||||||||||||||||||||||||||||||    
T  49931582 taaaaaatgattgtacaaatatcatttctc 49931553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 5 - 40
Target Start/End: Complemental strand, 835910 - 835874
Alignment:
Q  5 caaaaattgtaa-aaaatgattgtacaaatatcattt 40  Q
    |||||||||||| ||||||||||||||||||||||||    
T  835910 caaaaattgtaacaaaatgattgtacaaatatcattt 835874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 5 - 44
Target Start/End: Complemental strand, 1100256 - 1100216
Alignment:
Q  5 caaaaattgta-aaaaatgattgtacaaatatcatttctct 44  Q
    ||||||||||| ||||||| |||||||||||||||||||||    
T  1100256 caaaaattgtacaaaaatggttgtacaaatatcatttctct 1100216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 17 - 45
Target Start/End: Complemental strand, 27563510 - 27563482
Alignment:
Q  17 aaaatgattgtacaaatatcatttctcta 45  Q
    |||||||||||||||||||||||||||||    
T  27563510 aaaatgattgtacaaatatcatttctcta 27563482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 15 - 55
Target Start/End: Original strand, 30467569 - 30467609
Alignment:
Q  15 aaaaaatgattgtacaaatatcatttctctattttttatac 55  Q
    ||||||||| ||| |||||||||||||||||||||| ||||    
T  30467569 aaaaaatgactgttcaaatatcatttctctatttttaatac 30467609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 6 - 46
Target Start/End: Complemental strand, 34157557 - 34157517
Alignment:
Q  6 aaaaattgtaaaaaatgattgtacaaatatcatttctctat 46  Q
    ||||||| | ||||||| |||||||||||||||||||||||    
T  34157557 aaaaattattaaaaatggttgtacaaatatcatttctctat 34157517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 15 - 43
Target Start/End: Complemental strand, 40238466 - 40238438
Alignment:
Q  15 aaaaaatgattgtacaaatatcatttctc 43  Q
    |||||||||||||||||||||||||||||    
T  40238466 aaaaaatgattgtacaaatatcatttctc 40238438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 5 - 53
Target Start/End: Original strand, 46300729 - 46300777
Alignment:
Q  5 caaaaattgtaaaaaatgattgtacaaatatcatttctctattttttat 53  Q
    |||||||| ||||||||| |||| |||||||||||| |||| |||||||    
T  46300729 caaaaattataaaaaatggttgttcaaatatcatttttctactttttat 46300777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 17 - 49
Target Start/End: Original strand, 51168813 - 51168845
Alignment:
Q  17 aaaatgattgtacaaatatcatttctctatttt 49  Q
    ||||||||||||||| |||||||||||||||||    
T  51168813 aaaatgattgtacaagtatcatttctctatttt 51168845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 35; Significance: 0.00000000008; HSPs: 14)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 5 - 50
Target Start/End: Complemental strand, 1709323 - 1709277
Alignment:
Q  5 caaaaattgta-aaaaatgattgtacaaatatcatttctctattttt 50  Q
    ||||||||||| ||||||||||||||| |||||||||||||||||||    
T  1709323 caaaaattgtacaaaaatgattgtacagatatcatttctctattttt 1709277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 5 - 44
Target Start/End: Complemental strand, 42552938 - 42552898
Alignment:
Q  5 caaaaattgta-aaaaatgattgtacaaatatcatttctct 44  Q
    ||||||||||| |||||||||||||||||||||||||||||    
T  42552938 caaaaattgtataaaaatgattgtacaaatatcatttctct 42552898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 17 - 51
Target Start/End: Complemental strand, 19426606 - 19426572
Alignment:
Q  17 aaaatgattgtacaaatatcatttctctatttttt 51  Q
    |||||| ||||||||||||||||||||||||||||    
T  19426606 aaaatggttgtacaaatatcatttctctatttttt 19426572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 6 - 44
Target Start/End: Original strand, 22918475 - 22918513
Alignment:
Q  6 aaaaattgtaaaaaatgattgtacaaatatcatttctct 44  Q
    ||||||||||||||||| |||| ||||||||||||||||    
T  22918475 aaaaattgtaaaaaatggttgttcaaatatcatttctct 22918513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 5 - 43
Target Start/End: Complemental strand, 38861134 - 38861096
Alignment:
Q  5 caaaaattgtaaaaaatgattgtacaaatatcatttctc 43  Q
    ||||| ||||||||||||||||| |||||||||||||||    
T  38861134 caaaagttgtaaaaaatgattgttcaaatatcatttctc 38861096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 15 - 48
Target Start/End: Complemental strand, 46148194 - 46148161
Alignment:
Q  15 aaaaaatgattgtacaaatatcatttctctattt 48  Q
    ||||||||||| ||||||||||||||||||||||    
T  46148194 aaaaaatgattttacaaatatcatttctctattt 46148161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 6 - 45
Target Start/End: Complemental strand, 9031243 - 9031203
Alignment:
Q  6 aaaaattgtaa-aaaatgattgtacaaatatcatttctcta 45  Q
    ||||||||||| |||||| ||||||||||||||||||||||    
T  9031243 aaaaattgtaacaaaatgtttgtacaaatatcatttctcta 9031203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 7 - 43
Target Start/End: Complemental strand, 11325934 - 11325898
Alignment:
Q  7 aaaattgtaaaaaatgattgtacaaatatcatttctc 43  Q
    |||||||| |||||| |||||||||||||||||||||    
T  11325934 aaaattgtcaaaaataattgtacaaatatcatttctc 11325898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 6 - 46
Target Start/End: Original strand, 12102743 - 12102783
Alignment:
Q  6 aaaaattgtaaaaaatgattgtacaaatatcatttctctat 46  Q
    ||||||||| | ||||||||| |||||||||||||||||||    
T  12102743 aaaaattgtcacaaatgattgaacaaatatcatttctctat 12102783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 5 - 49
Target Start/End: Original strand, 25192917 - 25192961
Alignment:
Q  5 caaaaattgtaaaaaatgattgtacaaatatcatttctctatttt 49  Q
    ||||| |||||||||||| |||| |||||||||||||||| ||||    
T  25192917 caaaagttgtaaaaaatggttgttcaaatatcatttctctttttt 25192961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 5 - 44
Target Start/End: Original strand, 27070700 - 27070740
Alignment:
Q  5 caaaaattgtaa-aaaatgattgtacaaatatcatttctct 44  Q
    ||||| |||||| ||||||||||||||||||||||||||||    
T  27070700 caaaagttgtaataaaatgattgtacaaatatcatttctct 27070740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 5 - 44
Target Start/End: Complemental strand, 27207613 - 27207573
Alignment:
Q  5 caaaaattgtaa-aaaatgattgtacaaatatcatttctct 44  Q
    ||||| |||||| ||||||||||||||||||||||||||||    
T  27207613 caaaagttgtaataaaatgattgtacaaatatcatttctct 27207573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 5 - 44
Target Start/End: Complemental strand, 41538521 - 41538481
Alignment:
Q  5 caaaaattgta-aaaaatgattgtacaaatatcatttctct 44  Q
    ||||||||||| ||||||| |||||||||||||||||||||    
T  41538521 caaaaattgtacaaaaatggttgtacaaatatcatttctct 41538481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 14 - 46
Target Start/End: Complemental strand, 42467233 - 42467201
Alignment:
Q  14 taaaaaatgattgtacaaatatcatttctctat 46  Q
    ||||||||| |||||||||||||||||||||||    
T  42467233 taaaaaatggttgtacaaatatcatttctctat 42467201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 35; Significance: 0.00000000008; HSPs: 27)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 1 - 46
Target Start/End: Complemental strand, 15638204 - 15638158
Alignment:
Q  1 tgtgcaaaaattgt-aaaaaatgattgtacaaatatcatttctctat 46  Q
    ||||||||| |||| ||||||||||||||||||||||||||||||||    
T  15638204 tgtgcaaaagttgtcaaaaaatgattgtacaaatatcatttctctat 15638158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 5 - 46
Target Start/End: Complemental strand, 29175265 - 29175224
Alignment:
Q  5 caaaaattgtaaaaaatgattgtacaaatatcatttctctat 46  Q
    ||||||||||||||||||||||| || |||||||||||||||    
T  29175265 caaaaattgtaaaaaatgattgttcatatatcatttctctat 29175224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 51107469 - 51107514
Alignment:
Q  1 tgtgcaaaaattgta-aaaaatgattgtacaaatatcatttctcta 45  Q
    |||||||||||| || ||||||||||||||||||||||||||||||    
T  51107469 tgtgcaaaaattatacaaaaatgattgtacaaatatcatttctcta 51107514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 15 - 47
Target Start/End: Complemental strand, 31559566 - 31559534
Alignment:
Q  15 aaaaaatgattgtacaaatatcatttctctatt 47  Q
    |||||||||||||||||||||||||||||||||    
T  31559566 aaaaaatgattgtacaaatatcatttctctatt 31559534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 5 - 48
Target Start/End: Original strand, 56474796 - 56474840
Alignment:
Q  5 caaaaattgtaaaa-aatgattgtacaaatatcatttctctattt 48  Q
    |||||||||||||| ||||||||| ||||||||||||||||||||    
T  56474796 caaaaattgtaaaaaaatgattgttcaaatatcatttctctattt 56474840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 6 - 44
Target Start/End: Complemental strand, 22893907 - 22893868
Alignment:
Q  6 aaaaattgta-aaaaatgattgtacaaatatcatttctct 44  Q
    |||||||||| |||||||||||||||||||||||||||||    
T  22893907 aaaaattgtacaaaaatgattgtacaaatatcatttctct 22893868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 6 - 44
Target Start/End: Complemental strand, 22945575 - 22945536
Alignment:
Q  6 aaaaattgta-aaaaatgattgtacaaatatcatttctct 44  Q
    |||||||||| |||||||||||||||||||||||||||||    
T  22945575 aaaaattgtacaaaaatgattgtacaaatatcatttctct 22945536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 5 - 44
Target Start/End: Complemental strand, 38134391 - 38134352
Alignment:
Q  5 caaaaattgtaaaaaatgattgtacaaatatcatttctct 44  Q
    |||||||||||||||||| |||| ||||||||||||||||    
T  38134391 caaaaattgtaaaaaatggttgttcaaatatcatttctct 38134352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 5 - 44
Target Start/End: Complemental strand, 40348832 - 40348793
Alignment:
Q  5 caaaaattgtaaaaaatgattgtacaaatatcatttctct 44  Q
    |||||||| |||||||||||||| ||||||||||||||||    
T  40348832 caaaaattataaaaaatgattgttcaaatatcatttctct 40348793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 7 - 53
Target Start/End: Complemental strand, 4106090 - 4106044
Alignment:
Q  7 aaaattgtaaaaaatgattgtacaaatatcatttctctattttttat 53  Q
    ||||||||||||||  ||||||||||||||||||||||  |||||||    
T  4106090 aaaattgtaaaaaaaaattgtacaaatatcatttctcttatttttat 4106044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 6 - 40
Target Start/End: Original strand, 38376525 - 38376559
Alignment:
Q  6 aaaaattgtaaaaaatgattgtacaaatatcattt 40  Q
    |||||||||||||||||||||| ||||||||||||    
T  38376525 aaaaattgtaaaaaatgattgttcaaatatcattt 38376559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 6 - 43
Target Start/End: Complemental strand, 40335827 - 40335789
Alignment:
Q  6 aaaaattgtaa-aaaatgattgtacaaatatcatttctc 43  Q
    ||||||||||| |||||||||||||||||||||||||||    
T  40335827 aaaaattgtaataaaatgattgtacaaatatcatttctc 40335789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 5 - 43
Target Start/End: Complemental strand, 46634138 - 46634100
Alignment:
Q  5 caaaaattgtaaaaaatgattgtacaaatatcatttctc 43  Q
    ||||| ||||||||||||||||| |||||||||||||||    
T  46634138 caaaagttgtaaaaaatgattgttcaaatatcatttctc 46634100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 6 - 44
Target Start/End: Complemental strand, 55510897 - 55510859
Alignment:
Q  6 aaaaattgtaaaaaatgattgtacaaatatcatttctct 44  Q
    ||||||||| | |||||||||||||||||||||||||||    
T  55510897 aaaaattgtcataaatgattgtacaaatatcatttctct 55510859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 5 - 42
Target Start/End: Original strand, 336840 - 336877
Alignment:
Q  5 caaaaattgtaaaaaatgattgtacaaatatcatttct 42  Q
    |||||||||| |||||| ||||||||||||||||||||    
T  336840 caaaaattgtcaaaaataattgtacaaatatcatttct 336877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 5 - 49
Target Start/End: Complemental strand, 4577596 - 4577551
Alignment:
Q  5 caaaaattgtaa-aaaatgattgtacaaatatcatttctctatttt 49  Q
    |||||||||||  |||||| ||||||||||||||||||||||||||    
T  4577596 caaaaattgtacgaaaatggttgtacaaatatcatttctctatttt 4577551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 17 - 50
Target Start/End: Original strand, 9828017 - 9828050
Alignment:
Q  17 aaaatgattgtacaaatatcatttctctattttt 50  Q
    |||||| |||||||||||||||||||||||||||    
T  9828017 aaaatggttgtacaaatatcatttctctattttt 9828050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 15 - 48
Target Start/End: Original strand, 12387697 - 12387730
Alignment:
Q  15 aaaaaatgattgtacaaatatcatttctctattt 48  Q
    ||||||||||||||||||||||||||||| ||||    
T  12387697 aaaaaatgattgtacaaatatcatttctcaattt 12387730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 16 - 49
Target Start/End: Original strand, 41010202 - 41010235
Alignment:
Q  16 aaaaatgattgtacaaatatcatttctctatttt 49  Q
    ||||||||||||| ||||||||||||||||||||    
T  41010202 aaaaatgattgtataaatatcatttctctatttt 41010235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 17 - 46
Target Start/End: Complemental strand, 50980628 - 50980599
Alignment:
Q  17 aaaatgattgtacaaatatcatttctctat 46  Q
    ||||||||||||||||||||||||||||||    
T  50980628 aaaatgattgtacaaatatcatttctctat 50980599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 5 - 45
Target Start/End: Original strand, 54801519 - 54801560
Alignment:
Q  5 caaaaattgtaa-aaaatgattgtacaaatatcatttctcta 45  Q
    |||||||| ||| |||||||||||||||||||||||||||||    
T  54801519 caaaaattataataaaatgattgtacaaatatcatttctcta 54801560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 15 - 47
Target Start/End: Original strand, 8481664 - 8481696
Alignment:
Q  15 aaaaaatgattgtacaaatatcatttctctatt 47  Q
    ||||||| |||||||||||||||||||||||||    
T  8481664 aaaaaataattgtacaaatatcatttctctatt 8481696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 16 - 48
Target Start/End: Complemental strand, 22007860 - 22007828
Alignment:
Q  16 aaaaatgattgtacaaatatcatttctctattt 48  Q
    |||||| ||||||||||||||||||||||||||    
T  22007860 aaaaataattgtacaaatatcatttctctattt 22007828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 21 - 53
Target Start/End: Original strand, 31804378 - 31804410
Alignment:
Q  21 tgattgtacaaatatcatttctctattttttat 53  Q
    |||||||||||||||||||||||||||| ||||    
T  31804378 tgattgtacaaatatcatttctctatttattat 31804410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 5 - 45
Target Start/End: Complemental strand, 36177944 - 36177904
Alignment:
Q  5 caaaaattgtaaaaaatgattgtacaaatatcatttctcta 45  Q
    ||||| |||||||||||| |||| |||||||||||||||||    
T  36177944 caaaagttgtaaaaaatggttgttcaaatatcatttctcta 36177904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 44
Target Start/End: Original strand, 36728650 - 36728694
Alignment:
Q  1 tgtgcaaaaattgt-aaaaaatgattgtacaaatatcatttctct 44  Q
    |||||||||||||| |||||||| | |||||||||||||||||||    
T  36728650 tgtgcaaaaattgtcaaaaaatggtcgtacaaatatcatttctct 36728694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 16 - 44
Target Start/End: Complemental strand, 50291309 - 50291281
Alignment:
Q  16 aaaaatgattgtacaaatatcatttctct 44  Q
    |||||||||||||||||||||||||||||    
T  50291309 aaaaatgattgtacaaatatcatttctct 50291281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 35; Significance: 0.00000000008; HSPs: 24)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 14 - 48
Target Start/End: Complemental strand, 34913121 - 34913087
Alignment:
Q  14 taaaaaatgattgtacaaatatcatttctctattt 48  Q
    |||||||||||||||||||||||||||||||||||    
T  34913121 taaaaaatgattgtacaaatatcatttctctattt 34913087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 5 - 46
Target Start/End: Complemental strand, 9207628 - 9207587
Alignment:
Q  5 caaaaattgtaaaaaatgattgtacaaatatcatttctctat 46  Q
    ||||| ||||||||||||||||| ||||||||||||||||||    
T  9207628 caaaagttgtaaaaaatgattgttcaaatatcatttctctat 9207587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 6 - 46
Target Start/End: Complemental strand, 1573742 - 1573702
Alignment:
Q  6 aaaaattgtaaaaaatgattgtacaaatatcatttctctat 46  Q
    ||||||||| ||||| |||||||||||||||||||||||||    
T  1573742 aaaaattgtcaaaaaagattgtacaaatatcatttctctat 1573702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 7 - 43
Target Start/End: Original strand, 11164410 - 11164446
Alignment:
Q  7 aaaattgtaaaaaatgattgtacaaatatcatttctc 43  Q
    |||||||||||||| ||||||||||||||||||||||    
T  11164410 aaaattgtaaaaaaggattgtacaaatatcatttctc 11164446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 15 - 47
Target Start/End: Original strand, 43820784 - 43820816
Alignment:
Q  15 aaaaaatgattgtacaaatatcatttctctatt 47  Q
    |||||||||||||||||||||||||||||||||    
T  43820784 aaaaaatgattgtacaaatatcatttctctatt 43820816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 16 - 47
Target Start/End: Complemental strand, 12256928 - 12256897
Alignment:
Q  16 aaaaatgattgtacaaatatcatttctctatt 47  Q
    ||||||||||||||||||||||||||||||||    
T  12256928 aaaaatgattgtacaaatatcatttctctatt 12256897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 17 - 48
Target Start/End: Original strand, 22353209 - 22353240
Alignment:
Q  17 aaaatgattgtacaaatatcatttctctattt 48  Q
    ||||||||||||||||||||||||||||||||    
T  22353209 aaaatgattgtacaaatatcatttctctattt 22353240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 14 - 61
Target Start/End: Complemental strand, 24766181 - 24766134
Alignment:
Q  14 taaaaaatgattgtacaaatatcatttctctattttttatacctaatt 61  Q
    ||||||||| |||||||||||||||||||||  |||||||| ||||||    
T  24766181 taaaaaatggttgtacaaatatcatttctcttgtttttatatctaatt 24766134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 5 - 43
Target Start/End: Complemental strand, 30416399 - 30416360
Alignment:
Q  5 caaaaattgt-aaaaaatgattgtacaaatatcatttctc 43  Q
    |||||||||| |||||||||||||||||||||||||||||    
T  30416399 caaaaattgtcaaaaaatgattgtacaaatatcatttctc 30416360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 14 - 45
Target Start/End: Complemental strand, 44058760 - 44058729
Alignment:
Q  14 taaaaaatgattgtacaaatatcatttctcta 45  Q
    ||||||||||||||||||||||||||||||||    
T  44058760 taaaaaatgattgtacaaatatcatttctcta 44058729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 5 - 46
Target Start/End: Complemental strand, 14871679 - 14871637
Alignment:
Q  5 caaaaattgtaa-aaaatgattgtacaaatatcatttctctat 46  Q
    |||||||||||| |||||| |||||||||||||||||||||||    
T  14871679 caaaaattgtaagaaaatggttgtacaaatatcatttctctat 14871637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 7 - 52
Target Start/End: Original strand, 22296152 - 22296198
Alignment:
Q  7 aaaattgta-aaaaatgattgtacaaatatcatttctctatttttta 52  Q
    ||||||||| ||||||| |||||||||||||||||||||| ||||||    
T  22296152 aaaattgtacaaaaatggttgtacaaatatcatttctctaattttta 22296198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 14 - 43
Target Start/End: Complemental strand, 3771400 - 3771371
Alignment:
Q  14 taaaaaatgattgtacaaatatcatttctc 43  Q
    ||||||||||||||||||||||||||||||    
T  3771400 taaaaaatgattgtacaaatatcatttctc 3771371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 16 - 45
Target Start/End: Original strand, 11152743 - 11152772
Alignment:
Q  16 aaaaatgattgtacaaatatcatttctcta 45  Q
    ||||||||||||||||||||||||||||||    
T  11152743 aaaaatgattgtacaaatatcatttctcta 11152772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 5 - 45
Target Start/End: Complemental strand, 38571978 - 38571937
Alignment:
Q  5 caaaaattgtaaaa-aatgattgtacaaatatcatttctcta 45  Q
    |||||||||||| | |||||||||||||||||||||||||||    
T  38571978 caaaaattgtaatataatgattgtacaaatatcatttctcta 38571937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 6 - 42
Target Start/End: Original strand, 8555324 - 8555360
Alignment:
Q  6 aaaaattgtaaaaaatgattgtacaaatatcatttct 42  Q
    ||||||||| ||||| |||||||||||||||||||||    
T  8555324 aaaaattgtcaaaaaagattgtacaaatatcatttct 8555360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 24 - 52
Target Start/End: Complemental strand, 13553166 - 13553138
Alignment:
Q  24 ttgtacaaatatcatttctctatttttta 52  Q
    |||||||||||||||||||||||||||||    
T  13553166 ttgtacaaatatcatttctctatttttta 13553138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 5 - 45
Target Start/End: Original strand, 18254242 - 18254282
Alignment:
Q  5 caaaaattgtaaaaaatgattgtacaaatatcatttctcta 45  Q
    ||||| |||||||||||| |||| |||||||||||||||||    
T  18254242 caaaagttgtaaaaaatggttgttcaaatatcatttctcta 18254282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 19 - 51
Target Start/End: Original strand, 26387906 - 26387938
Alignment:
Q  19 aatgattgtacaaatatcatttctctatttttt 51  Q
    |||| ||||||||||||||||||||||||||||    
T  26387906 aatggttgtacaaatatcatttctctatttttt 26387938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 44
Target Start/End: Complemental strand, 29168768 - 29168724
Alignment:
Q  1 tgtgcaaaaattgt-aaaaaatgattgtacaaatatcatttctct 44  Q
    ||||||||| |||| |||||||| |||||||||||||||||||||    
T  29168768 tgtgcaaaagttgtcaaaaaatggttgtacaaatatcatttctct 29168724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 16 - 44
Target Start/End: Complemental strand, 34141469 - 34141441
Alignment:
Q  16 aaaaatgattgtacaaatatcatttctct 44  Q
    |||||||||||||||||||||||||||||    
T  34141469 aaaaatgattgtacaaatatcatttctct 34141441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 6 - 42
Target Start/End: Original strand, 34945124 - 34945160
Alignment:
Q  6 aaaaattgtaaaaaatgattgtacaaatatcatttct 42  Q
    ||||||| |||||||||||||| ||||||||||||||    
T  34945124 aaaaattataaaaaatgattgttcaaatatcatttct 34945160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 15 - 43
Target Start/End: Original strand, 41868413 - 41868441
Alignment:
Q  15 aaaaaatgattgtacaaatatcatttctc 43  Q
    |||||||||||||||||||||||||||||    
T  41868413 aaaaaatgattgtacaaatatcatttctc 41868441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 14 - 50
Target Start/End: Complemental strand, 45420164 - 45420128
Alignment:
Q  14 taaaaaatgattgtacaaatatcatttctctattttt 50  Q
    ||||||||| ||||||||||||| |||||||||||||    
T  45420164 taaaaaatggttgtacaaatatcgtttctctattttt 45420128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 34; Significance: 0.0000000003; HSPs: 16)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 7 - 47
Target Start/End: Complemental strand, 7010722 - 7010681
Alignment:
Q  7 aaaattgt-aaaaaatgattgtacaaatatcatttctctatt 47  Q
    |||||||| |||||||||||||||||||||||||||||||||    
T  7010722 aaaattgtcaaaaaatgattgtacaaatatcatttctctatt 7010681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 17 - 54
Target Start/End: Complemental strand, 36064056 - 36064019
Alignment:
Q  17 aaaatgattgtacaaatatcatttctctattttttata 54  Q
    ||||||||||||||||||||||||||||||||| ||||    
T  36064056 aaaatgattgtacaaatatcatttctctattttatata 36064019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 5 - 45
Target Start/End: Complemental strand, 9227307 - 9227267
Alignment:
Q  5 caaaaattgtaaaaaatgattgtacaaatatcatttctcta 45  Q
    |||||||| ||||||| ||||||||||||||||||||||||    
T  9227307 caaaaattttaaaaaaagattgtacaaatatcatttctcta 9227267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 5 - 45
Target Start/End: Original strand, 38578397 - 38578437
Alignment:
Q  5 caaaaattgtaaaaaatgattgtacaaatatcatttctcta 45  Q
    ||||||||||||||||| ||||| |||||||||||||||||    
T  38578397 caaaaattgtaaaaaataattgttcaaatatcatttctcta 38578437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 5 - 44
Target Start/End: Complemental strand, 10692477 - 10692438
Alignment:
Q  5 caaaaattgtaaaaaatgattgtacaaatatcatttctct 44  Q
    |||||||| |||||||||||||| ||||||||||||||||    
T  10692477 caaaaattataaaaaatgattgttcaaatatcatttctct 10692438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 5 - 51
Target Start/End: Complemental strand, 40649489 - 40649442
Alignment:
Q  5 caaaaattgt-aaaaaatgattgtacaaatatcatttctctatttttt 51  Q
    |||||||||| ||||||||| ||| |||||||||||||||||||||||    
T  40649489 caaaaattgttaaaaaatgaatgttcaaatatcatttctctatttttt 40649442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 14 - 44
Target Start/End: Complemental strand, 29108024 - 29107994
Alignment:
Q  14 taaaaaatgattgtacaaatatcatttctct 44  Q
    |||||||||||||||||||||||||||||||    
T  29108024 taaaaaatgattgtacaaatatcatttctct 29107994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 14 - 44
Target Start/End: Complemental strand, 35792098 - 35792068
Alignment:
Q  14 taaaaaatgattgtacaaatatcatttctct 44  Q
    |||||||||||||||||||||||||||||||    
T  35792098 taaaaaatgattgtacaaatatcatttctct 35792068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 6 - 43
Target Start/End: Original strand, 41406889 - 41406927
Alignment:
Q  6 aaaaattgt-aaaaaatgattgtacaaatatcatttctc 43  Q
    ||||||||| |||||||||||||||||||||||||||||    
T  41406889 aaaaattgtcaaaaaatgattgtacaaatatcatttctc 41406927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 16 - 45
Target Start/End: Complemental strand, 18550006 - 18549977
Alignment:
Q  16 aaaaatgattgtacaaatatcatttctcta 45  Q
    ||||||||||||||||||||||||||||||    
T  18550006 aaaaatgattgtacaaatatcatttctcta 18549977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 6 - 43
Target Start/End: Original strand, 32501230 - 32501267
Alignment:
Q  6 aaaaattgtaaaaaatgattgtacaaatatcatttctc 43  Q
    |||| ||||||||||||||||| |||||||||||||||    
T  32501230 aaaagttgtaaaaaatgattgttcaaatatcatttctc 32501267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 17 - 46
Target Start/End: Complemental strand, 44068745 - 44068716
Alignment:
Q  17 aaaatgattgtacaaatatcatttctctat 46  Q
    ||||||||||||||||||||||||||||||    
T  44068745 aaaatgattgtacaaatatcatttctctat 44068716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 5 - 44
Target Start/End: Complemental strand, 11584135 - 11584095
Alignment:
Q  5 caaaaattgtaa-aaaatgattgtacaaatatcatttctct 44  Q
    |||||||||||| |||||| |||||||||||||||||||||    
T  11584135 caaaaattgtaagaaaatggttgtacaaatatcatttctct 11584095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 14 - 50
Target Start/End: Original strand, 12339200 - 12339236
Alignment:
Q  14 taaaaaatgattgtacaaatatcatttctctattttt 50  Q
    ||||||||||||||||||||||| |||||||| ||||    
T  12339200 taaaaaatgattgtacaaatatcgtttctctactttt 12339236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 15 - 43
Target Start/End: Original strand, 13884203 - 13884231
Alignment:
Q  15 aaaaaatgattgtacaaatatcatttctc 43  Q
    |||||||||||||||||||||||||||||    
T  13884203 aaaaaatgattgtacaaatatcatttctc 13884231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 16 - 44
Target Start/End: Original strand, 20996191 - 20996219
Alignment:
Q  16 aaaaatgattgtacaaatatcatttctct 44  Q
    |||||||||||||||||||||||||||||    
T  20996191 aaaaatgattgtacaaatatcatttctct 20996219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0154 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0154
Description:

Target: scaffold0154; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 6 - 45
Target Start/End: Original strand, 9881 - 9921
Alignment:
Q  6 aaaaattgt-aaaaaatgattgtacaaatatcatttctcta 45  Q
    ||||||||| |||||||||||||||||||||||||||||||    
T  9881 aaaaattgtgaaaaaatgattgtacaaatatcatttctcta 9921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 32; Significance: 0.000000005; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 5 - 52
Target Start/End: Original strand, 5570366 - 5570413
Alignment:
Q  5 caaaaattgtaaaaaatgattgtacaaatatcatttctctatttttta 52  Q
    |||||||||||||||||| |||| |||||||||||||| | |||||||    
T  5570366 caaaaattgtaaaaaatggttgttcaaatatcatttctttttttttta 5570413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 17 - 48
Target Start/End: Complemental strand, 30714706 - 30714675
Alignment:
Q  17 aaaatgattgtacaaatatcatttctctattt 48  Q
    ||||||||||||||||||||||||||||||||    
T  30714706 aaaatgattgtacaaatatcatttctctattt 30714675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 5 - 54
Target Start/End: Complemental strand, 1156759 - 1156710
Alignment:
Q  5 caaaaattgtaaaaaatgattgtacaaatatcatttctctattttttata 54  Q
    ||||| |||||||||||| |||| ||||||||||||||||  ||||||||    
T  1156759 caaaagttgtaaaaaatggttgttcaaatatcatttctcttatttttata 1156710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 15 - 44
Target Start/End: Original strand, 3180035 - 3180064
Alignment:
Q  15 aaaaaatgattgtacaaatatcatttctct 44  Q
    ||||||||||||||||||||||||||||||    
T  3180035 aaaaaatgattgtacaaatatcatttctct 3180064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 17 - 50
Target Start/End: Original strand, 31417341 - 31417374
Alignment:
Q  17 aaaatgattgtacaaatatcatttctctattttt 50  Q
    |||||||||||| |||||||||||||||||||||    
T  31417341 aaaatgattgtataaatatcatttctctattttt 31417374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 16 - 45
Target Start/End: Complemental strand, 34792049 - 34792020
Alignment:
Q  16 aaaaatgattgtacaaatatcatttctcta 45  Q
    ||||||||||||||||||||||||||||||    
T  34792049 aaaaatgattgtacaaatatcatttctcta 34792020  T

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Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 5 - 44
Target Start/End: Original strand, 2242054 - 2242094
Alignment:
Q  5 caaaaattgt-aaaaaatgattgtacaaatatcatttctct 44  Q
    |||||||||| ||||||||||||| ||||||||||||||||    
T  2242054 caaaaattgtcaaaaaatgattgttcaaatatcatttctct 2242094  T

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Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 17 - 45
Target Start/End: Original strand, 7636473 - 7636501
Alignment:
Q  17 aaaatgattgtacaaatatcatttctcta 45  Q
    |||||||||||||||||||||||||||||    
T  7636473 aaaatgattgtacaaatatcatttctcta 7636501  T

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Target: chr6; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 6 - 49
Target Start/End: Complemental strand, 34490385 - 34490341
Alignment:
Q  6 aaaaattgt-aaaaaatgattgtacaaatatcatttctctatttt 49  Q
    ||||||||| |||||||| ||||||||||||||||| ||||||||    
T  34490385 aaaaattgttaaaaaatggttgtacaaatatcatttatctatttt 34490341  T

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Target: chr5 (Bit Score: 32; Significance: 0.000000005; HSPs: 10)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 5 - 44
Target Start/End: Original strand, 1079985 - 1080024
Alignment:
Q  5 caaaaattgtaaaaaatgattgtacaaatatcatttctct 44  Q
    ||||||||||||||||| ||||| ||||||||||||||||    
T  1079985 caaaaattgtaaaaaataattgttcaaatatcatttctct 1080024  T

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Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 5 - 44
Target Start/End: Original strand, 7076601 - 7076640
Alignment:
Q  5 caaaaattgtaaaaaatgattgtacaaatatcatttctct 44  Q
    |||||||| |||||||||||||| ||||||||||||||||    
T  7076601 caaaaattataaaaaatgattgttcaaatatcatttctct 7076640  T

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Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 14 - 48
Target Start/End: Original strand, 11881029 - 11881063
Alignment:
Q  14 taaaaaatgattgtacaaatatcatttctctattt 48  Q
    |||||||| ||||||||||||||||||||||||||    
T  11881029 taaaaaataattgtacaaatatcatttctctattt 11881063  T

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Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 5 - 43
Target Start/End: Original strand, 22649694 - 22649732
Alignment:
Q  5 caaaaattgtaaaaaatgattgtacaaatatcatttctc 43  Q
    |||||||||||||||||| |||| |||||||||||||||    
T  22649694 caaaaattgtaaaaaatggttgttcaaatatcatttctc 22649732  T

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Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 6 - 43
Target Start/End: Complemental strand, 15479506 - 15479469
Alignment:
Q  6 aaaaattgtaaaaaatgattgtacaaatatcatttctc 43  Q
    |||| ||||||||||||||||| |||||||||||||||    
T  15479506 aaaagttgtaaaaaatgattgttcaaatatcatttctc 15479469  T

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Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 6 - 43
Target Start/End: Original strand, 39807748 - 39807785
Alignment:
Q  6 aaaaattgtaaaaaatgattgtacaaatatcatttctc 43  Q
    ||||||||||||||||| |||| |||||||||||||||    
T  39807748 aaaaattgtaaaaaatggttgttcaaatatcatttctc 39807785  T

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Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 11 - 43
Target Start/End: Complemental strand, 1764256 - 1764224
Alignment:
Q  11 ttgtaaaaaatgattgtacaaatatcatttctc 43  Q
    ||||||||||||||||| |||||||||||||||    
T  1764256 ttgtaaaaaatgattgttcaaatatcatttctc 1764224  T

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Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 15 - 43
Target Start/End: Complemental strand, 8681871 - 8681843
Alignment:
Q  15 aaaaaatgattgtacaaatatcatttctc 43  Q
    |||||||||||||||||||||||||||||    
T  8681871 aaaaaatgattgtacaaatatcatttctc 8681843  T

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Target: chr5; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 15 - 43
Target Start/End: Complemental strand, 17063893 - 17063865
Alignment:
Q  15 aaaaaatgattgtacaaatatcatttctc 43  Q
    |||||||||||||||||||||||||||||    
T  17063893 aaaaaatgattgtacaaatatcatttctc 17063865  T

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Target: chr5; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 16 - 44
Target Start/End: Original strand, 34693260 - 34693288
Alignment:
Q  16 aaaaatgattgtacaaatatcatttctct 44  Q
    |||||||||||||||||||||||||||||    
T  34693260 aaaaatgattgtacaaatatcatttctct 34693288  T

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Target: scaffold0199 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0199
Description:

Target: scaffold0199; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 5 - 45
Target Start/End: Complemental strand, 8706 - 8666
Alignment:
Q  5 caaaaattgtaaaaaatgattgtacaaatatcatttctcta 45  Q
    ||||| ||||||||||||||||| |||||||||||| ||||    
T  8706 caaaagttgtaaaaaatgattgttcaaatatcatttttcta 8666  T

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Target: scaffold0024 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 5 - 40
Target Start/End: Complemental strand, 48693 - 48657
Alignment:
Q  5 caaaaattgta-aaaaatgattgtacaaatatcattt 40  Q
    ||||||||||| |||||||||||||||||||||||||    
T  48693 caaaaattgtacaaaaatgattgtacaaatatcattt 48657  T

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