View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15858_high_20 (Length: 208)
Name: NF15858_high_20
Description: NF15858
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15858_high_20 |
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Alignment Details
Target: chr6 (Bit Score: 190; Significance: 1e-103; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 6 - 199
Target Start/End: Original strand, 27076502 - 27076695
Alignment:
| Q |
6 |
tttttctttcttttcagttttaataaatctgttccctttgaattttatatatgcgtttctaaattctctatttttacatctcagtatacttatgtttaat |
105 |
Q |
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| T |
27076502 |
tttttctttcttttcagttttaataaatctgttccctttgaattttatatatgcgtttctaaattctctatttttacatctcagtatacttatgtttaat |
27076601 |
T |
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| Q |
106 |
tagtagttaaagtgatcaaaatattaaagttctttatatgcatatgtaagcaggatataatattctcttgttagttagatataaataattcttc |
199 |
Q |
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| T |
27076602 |
tagtagttaaagtgatcaaaatgttaaagttctttatatgcatatgtaagcaggatataatattctcttgttagttagatataaataattcttc |
27076695 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 98; Significance: 2e-48; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 1 - 126
Target Start/End: Original strand, 26051481 - 26051606
Alignment:
| Q |
1 |
agttatttttctttcttttcagttttaataaatctgttccctttgaattttatatatgcgtttctaaattctctatttttacatctcagtatacttatgt |
100 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||| ||||||||||||||||||||||||| |
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| T |
26051481 |
agttttttttctttcttttcagttttaataaatctgttccctttgaattttatatatgcgtttctgaattatctgtttttacatctcagtatacttatgt |
26051580 |
T |
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| Q |
101 |
ttaattagtagttaaagtgatcaaaa |
126 |
Q |
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| T |
26051581 |
ttaattagttgtcaaagtgataaaaa |
26051606 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 89; E-Value: 4e-43
Query Start/End: Original strand, 107 - 199
Target Start/End: Original strand, 26051700 - 26051792
Alignment:
| Q |
107 |
agtagttaaagtgatcaaaatattaaagttctttatatgcatatgtaagcaggatataatattctcttgttagttagatataaataattcttc |
199 |
Q |
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| T |
26051700 |
agtagttaaagtgatcaaaatgttaaagttctttatatgcatatgtaagcaggatataatattctcttgttagttagatataaataattcttc |
26051792 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 85; Significance: 1e-40; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 107 - 199
Target Start/End: Original strand, 32894470 - 32894562
Alignment:
| Q |
107 |
agtagttaaagtgatcaaaatattaaagttctttatatgcatatgtaagcaggatataatattctcttgttagttagatataaataattcttc |
199 |
Q |
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||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32894470 |
agtagttaaagtgatcaaaatgttaaaattctttatatgcatatgtaagcaggatataatattctcttgttagttagatataaataattcttc |
32894562 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 16 - 80
Target Start/End: Original strand, 32894206 - 32894270
Alignment:
| Q |
16 |
ttttcagttttaataaatctgttccctttgaattttatatatgcgtttctaaattctctattttt |
80 |
Q |
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| T |
32894206 |
ttttcagttttaataaatctgttccctttgaattttatatatgtgtttctgaattatctgttttt |
32894270 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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