View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15858_low_1 (Length: 719)
Name: NF15858_low_1
Description: NF15858
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15858_low_1 |
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Alignment Details
Target: chr6 (Bit Score: 156; Significance: 2e-82; HSPs: 6)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 156; E-Value: 2e-82
Query Start/End: Original strand, 390 - 614
Target Start/End: Complemental strand, 8369801 - 8369577
Alignment:
| Q |
390 |
cacttatgggagatagacagatgacatagactagtaggactcataagtagagttcacttatttnnnnnnnctcgactaactaccacttgtacgtctacct |
489 |
Q |
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| T |
8369801 |
cacttatgggaaatagacagatgacatagactagtaggactcataagtagagttcacttgttaaaaaaaactccactaactaccacttgtacgtctatct |
8369702 |
T |
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| Q |
490 |
ctcttataaatggacaacaaatgaagcaaagccgaattgtgttcatgggcggtgacatcattgaatgatggaggagggtgaaggacgaccggagtcgaac |
589 |
Q |
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| T |
8369701 |
cttttataaatggacaacaaatgaagtaaagccgaattgtattcatgggcggcaacatcattgaatgatggaggagggtgaaggacgactggagtcgaac |
8369602 |
T |
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| Q |
590 |
gtgtacgctaggatgtacaaggaag |
614 |
Q |
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| T |
8369601 |
atgtacgctaggatgtacaaggaag |
8369577 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 141; E-Value: 1e-73
Query Start/End: Original strand, 228 - 388
Target Start/End: Complemental strand, 8369988 - 8369828
Alignment:
| Q |
228 |
taccaaaaaagaagggccaaatattcatttgacttaaatttgcatggttttgcgcgtatcaaattggattaatgcttcaatgttctacctttctaactag |
327 |
Q |
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| T |
8369988 |
taccaaaaaagaagggccaaatattcatttgacttagatttgcatggttttgtgcgtatcaaattggattaatgtttcaatgttctacctttctaactag |
8369889 |
T |
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| Q |
328 |
gtggtatgcaaaatattcatatctacgataactctagaatttcaagtcgtgaggatgatat |
388 |
Q |
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| T |
8369888 |
gtggtgtgcaaaatattcatatctacgataactctagaatttcaagtcgtggggatgatat |
8369828 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 90; E-Value: 4e-43
Query Start/End: Original strand, 1 - 90
Target Start/End: Complemental strand, 8371392 - 8371303
Alignment:
| Q |
1 |
taatgtttgtctaccaaaatgttgactgtctcacaagttgaaaagtcacaccataaaaactactctactagcacaaattaaaaagagcca |
90 |
Q |
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| T |
8371392 |
taatgtttgtctaccaaaatgttgactgtctcacaagttgaaaagtcacaccataaaaactactctactagcacaaattaaaaagagcca |
8371303 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 75; E-Value: 4e-34
Query Start/End: Original strand, 609 - 699
Target Start/End: Complemental strand, 8369427 - 8369337
Alignment:
| Q |
609 |
aggaagtgttgttttaagattttagttgtgtcgatcaaaactgtttaaacaaattttgtattaatgatacgaaacatagaagtacagagga |
699 |
Q |
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| T |
8369427 |
aggaagtgttgttttaagattttatttgtgtcgatcaaaactgtttaaacaagttttgtattaatgataccaaacattgaagtacagagga |
8369337 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 73; E-Value: 6e-33
Query Start/End: Original strand, 154 - 230
Target Start/End: Complemental strand, 8370085 - 8370009
Alignment:
| Q |
154 |
atctgaagtgactatctcaggagttgggaacctatcttggagtgcacacaaagagccaaatgttcattactttttac |
230 |
Q |
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| T |
8370085 |
atctgaagtgactatctcaggagttgggaacctatcttagagtgcacacaaagagccaaatgttcattactttttac |
8370009 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 90 - 161
Target Start/End: Complemental strand, 8371246 - 8371175
Alignment:
| Q |
90 |
atagtaatagtattataaggagttcccaagtaaaaaagagagcatctcacataggatatgagtcatctgaag |
161 |
Q |
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| T |
8371246 |
atagtaatagtattataaggagttcccaagtaaaaaagagagcatctcacataggatatgagtcatctgaag |
8371175 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 53; Significance: 5e-21; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 97 - 188
Target Start/End: Original strand, 47783157 - 47783255
Alignment:
| Q |
97 |
tagtattataaggagttcccaagtaaaaaagagagcatctcacataggatatgagtca-------tctgaagtgactatctcaggagttgggaacctat |
188 |
Q |
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| T |
47783157 |
tagtattataaggagttcccaagtaaaaaagagagcaactttcataggatttgagtcatctgaattctgaagtgactatctcaggagttgagaacctat |
47783255 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 297 - 388
Target Start/End: Original strand, 47783402 - 47783493
Alignment:
| Q |
297 |
taatgcttcaatgttctacctttctaactaggtggtatgcaaaat-attcatatctacgataactctagaatttcaagtcgtgaggatgatat |
388 |
Q |
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| T |
47783402 |
taatgattcaatgttccaccttt-taaccaggtggtgtgcaaaattattcatatctacgatgactctagaatttcaagtcgtggggatgatat |
47783493 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 618 - 677
Target Start/End: Original strand, 47783950 - 47784009
Alignment:
| Q |
618 |
tgttttaagattttagttgtgtcgatcaaaactgtttaaacaaattttgtattaatgata |
677 |
Q |
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| T |
47783950 |
tgttttaagattttaattgtgtcgatcgaaactgtttacacaagttttgcattaatgata |
47784009 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 194 - 228
Target Start/End: Original strand, 47783277 - 47783311
Alignment:
| Q |
194 |
agtgcacacaaagagccaaatgttcattacttttt |
228 |
Q |
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| T |
47783277 |
agtgcacacaaagagccaaatgttcattacttttt |
47783311 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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