View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15858_low_10 (Length: 341)
Name: NF15858_low_10
Description: NF15858
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15858_low_10 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 265; Significance: 1e-148; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 265; E-Value: 1e-148
Query Start/End: Original strand, 13 - 325
Target Start/End: Original strand, 29040656 - 29040981
Alignment:
| Q |
13 |
aaaatcaaccaagcagaaaataaaatcaaaataattcacaaatggaagttggtatacttttcatgctttccttatcaacattttttctctcaggtaatta |
112 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
29040656 |
aaaatcaaccaagcagaaaataaaatcaaaataattcacaaatggaagttggtatacttttcatgctttccttatcaacactttttctctcaggtaatta |
29040755 |
T |
|
| Q |
113 |
agctctaatttcttgcatatcttcttcatta-----------ttatctcttaaagtaatttatattttgaataactaacaaatttttatgtatgta--gg |
199 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
29040756 |
agctctaatttcttgcatatcttcttcattaattatgtgttcttagctcttaaagtaatttatattttgaataactaacaaatttttatgtatgtatagg |
29040855 |
T |
|
| Q |
200 |
gtctcactcagcaacattcacaatcacaaacaattgtccatttacaatatggccagctacactaactggaggtggaggctcacaatcatcttcaactggt |
299 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
29040856 |
gtctcactcagcaacattcacaatcacaaacaattgtccatttacaatatggccagctacactaactggaggtggaggctcacaatcatcttcaaccggt |
29040955 |
T |
|
| Q |
300 |
tttgagctatcatccaaagcttccaa |
325 |
Q |
| |
|
|||||||||||||||||||||||||| |
|
|
| T |
29040956 |
tttgagctatcatccaaagcttccaa |
29040981 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 63; Significance: 2e-27; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 205 - 323
Target Start/End: Complemental strand, 28745626 - 28745508
Alignment:
| Q |
205 |
actcagcaacattcacaatcacaaacaattgtccatttacaatatggccagctacactaactggaggtggaggctcacaatcatcttcaactggttttga |
304 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||| || ||||||||||||||||| ||| ||||||| | ||||||| | ||||||| |||||||| |
|
|
| T |
28745626 |
actctgcaacattcacaatcacaaacaattgtccattcaccatatggccagctacactcactaaaggtggaagttcacaataaacttcaacaggttttga |
28745527 |
T |
|
| Q |
305 |
gctatcatccaaagcttcc |
323 |
Q |
| |
|
|||| | |||||| ||||| |
|
|
| T |
28745526 |
gctaccctccaaaacttcc |
28745508 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University