View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15858_low_12 (Length: 317)
Name: NF15858_low_12
Description: NF15858
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15858_low_12 |
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Alignment Details
Target: chr7 (Bit Score: 204; Significance: 1e-111; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 19 - 309
Target Start/End: Original strand, 31655166 - 31655458
Alignment:
| Q |
19 |
cacttatcgttttgtctgctggttctaacaaaatgccctcaagtctttgcattgtttatttctgtttcaacaatagtatattttatttatcaaactttga |
118 |
Q |
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| T |
31655166 |
cacttatcgttttgtctgctggttctaacaaaataccctcaagtctttgcattgtttatttctgtttcaacaatagtatattttatttatcaaactttga |
31655265 |
T |
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| Q |
119 |
ggnnnnnnn--tgtatattttatgaacacattaaccacactacgttgaccattgcataccnnnnnnnnnn-gacaaacgaccattgcatacttaatacta |
215 |
Q |
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|| |||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
31655266 |
ggaaaaaaaaatgtatattttatgaacacatta-ccacactacgttgaccattgcatacttttttttttttgacaaacgaccattgcatacttaatacta |
31655364 |
T |
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| Q |
216 |
atgaaaaaccgataataaaacatacgttgctcaactattccaaattaatgcaattcagaataaaggatatgctttgcttcgtcactgcctatgc |
309 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31655365 |
atgaaaaaccgataataaaacacacgttgctcaactattccaaattaatgcaattcagaataaaggatatgctttgcttcgtcactgcctatgc |
31655458 |
T |
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