View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15858_low_18 (Length: 269)
Name: NF15858_low_18
Description: NF15858
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15858_low_18 |
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Alignment Details
Target: chr1 (Bit Score: 219; Significance: 1e-120; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 26 - 252
Target Start/End: Complemental strand, 8119449 - 8119223
Alignment:
| Q |
26 |
caaaatgtgatagtataatctactgcatttgcacaagtgaaagtgctggtcttatcatcatatgcatagctatatgcacgtgggcaagcgttcttaaaca |
125 |
Q |
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| T |
8119449 |
caaaatgtgatagtataatctactgcatttgcacaagtgaaagtgctggtcttatcatcatatgcatagctatatgcacgtgggcaagcgttcttaaaca |
8119350 |
T |
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| Q |
126 |
attgagaataagtagaaggtttgcaagtgtctggtgtcccatatgcgccgctgcagcaatactccggtgaattaaaagcttcgcacgcgcttttacacgc |
225 |
Q |
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| T |
8119349 |
attgagaataagtagaaggtttgcaagtgtctggtgtcccatacgcgccgctgcagcaatactccggtgaattaaaagcttcgcacgcgcttttacacgc |
8119250 |
T |
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| Q |
226 |
gacgccgtctttcccatccacactcat |
252 |
Q |
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| T |
8119249 |
gacaccgtctttcccatccacactcat |
8119223 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 59 - 99
Target Start/End: Original strand, 27388704 - 27388744
Alignment:
| Q |
59 |
caagtgaaagtgctggtcttatcatcatatgcatagctata |
99 |
Q |
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| T |
27388704 |
caagtgaaagtgctgctcttatcatcgtaagcatagctata |
27388744 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 31935594 - 31935638
Alignment:
| Q |
1 |
tatttaccttggagaagaagaagggcaaaatgtgatagtataatc |
45 |
Q |
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| T |
31935594 |
tatttaccttggagaagaagaaggacaaaatgtgatagtataatc |
31935638 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 56 - 188
Target Start/End: Complemental strand, 53178141 - 53178009
Alignment:
| Q |
56 |
gcacaagtgaaagtgctggtcttatcatcatatgcatagctatatgcacgtgggcaagcgttcttaaacaattgagaataagtagaaggtttgcaagtgt |
155 |
Q |
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| T |
53178141 |
gcacatgtgaacgtgcttgtcttatcgtcgtacgcgtagctatacgcgcgtgggcaagcacttttaaataactcagaataactcgaaggtttgcaagtgt |
53178042 |
T |
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| Q |
156 |
ctggtgtcccatatgcgccgctgcagcaatact |
188 |
Q |
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| T |
53178041 |
tgggtgaaccatacgcgccgctgcaacaatact |
53178009 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 58 - 99
Target Start/End: Complemental strand, 28443218 - 28443177
Alignment:
| Q |
58 |
acaagtgaaagtgctggtcttatcatcatatgcatagctata |
99 |
Q |
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| T |
28443218 |
acaagtgaacgtgctggtcttatcatcataggtatagctata |
28443177 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 66 - 114
Target Start/End: Original strand, 27988143 - 27988191
Alignment:
| Q |
66 |
aagtgctggtcttatcatcatatgcatagctatatgcacgtgggcaagc |
114 |
Q |
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| T |
27988143 |
aagtactggtcttatcatcatacgcgtagctataagcgcgtgggcaagc |
27988191 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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