View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15858_low_2 (Length: 568)
Name: NF15858_low_2
Description: NF15858
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15858_low_2 |
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Alignment Details
Target: chr7 (Bit Score: 304; Significance: 1e-171; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 304; E-Value: 1e-171
Query Start/End: Original strand, 117 - 562
Target Start/End: Original strand, 25233554 - 25234036
Alignment:
| Q |
117 |
caaccacataaactacgccttgagaacattgttgagcatcaatgacatgcttaacttcttgtttatcccaaaaacttgtttacgagataaaagttggcac |
216 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| | ||| ||||||||||||||||||||||||||||||| |||||| |||| |
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| T |
25233554 |
caaccacataaactacgccttgagaacattgttgagcatcaatgacatgtctgactacttgtttatcccaaaaacttgtttacgagatgaaagttcgcac |
25233653 |
T |
|
| Q |
217 |
t-------cacttattactgtgattatgtcaaactcaacgtgattttaaatacgctctaatcctttgctgacaaattcatgccacaccttatttacattc |
309 |
Q |
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| T |
25233654 |
ttgacactcacttattattgtgattatgtcaaactcaatgtgattttaaacacgctctaatcctttgctgacaaattcatgccgcaccttatttacattc |
25233753 |
T |
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| Q |
310 |
attttcaaa------------taaaatctttggtaacacatat-----------------caccaaagttacccttttttctttgacagataactacctt |
380 |
Q |
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||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
25233754 |
attttcaaataaaatctcaaataaaatctttggtaacacatattttcctttgttagatatcaccaaagttacccttttttctttgacagataactacctt |
25233853 |
T |
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| Q |
381 |
attatataagaaatgaacagta-gcaaatgtccaaccagtcactatctgtttgtctttgtaaggtgcctgtgaatttaagttcggtaaattttatcatac |
479 |
Q |
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| T |
25233854 |
attatataagaaatgaacagtttgcaaatgtccaaccagtcactatctgtttgtctttgtaaggtgcctgtgaatttaagttcggtaaattttatcatac |
25233953 |
T |
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| Q |
480 |
ctaatgtagccatagtgaaatttcgtttatttgaacttagagtccttactgtttaggtttttcccgttttgtttcttctcact |
562 |
Q |
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| T |
25233954 |
ctaatgtagccatagtgaaatttcgtttatttgaacttagagtccttactgtttaggtttttcccgttttgtttcttgtcact |
25234036 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 16 - 119
Target Start/End: Original strand, 25232652 - 25232754
Alignment:
| Q |
16 |
ttatcatgttttaaaattcttgtgtcaaattcaatttccttaaagnnnnnnntacttaataccatatgaaaattaggtagcatttttgtatttttgagtg |
115 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| | |||||||||| ||||||||||||||||||||||||||||| ||||||| |
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| T |
25232652 |
ttatcatgttttaaaattcttgtgtcaaattcaatttccttaa-gaaaaaaatacttaatactatatgaaaattaggtagcatttttgtattgttgagtg |
25232750 |
T |
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| Q |
116 |
tcaa |
119 |
Q |
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|||| |
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| T |
25232751 |
tcaa |
25232754 |
T |
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