View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15858_low_22 (Length: 215)
Name: NF15858_low_22
Description: NF15858
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15858_low_22 |
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Alignment Details
Target: chr8 (Bit Score: 184; Significance: 1e-100; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 184; E-Value: 1e-100
Query Start/End: Original strand, 15 - 198
Target Start/End: Complemental strand, 280323 - 280140
Alignment:
| Q |
15 |
agagatgggattcaatgattatcaaagcaaattaaaagagcaaacaagaaagccatgtcggtttgaattgccacattttactttgcgtattattaatacc |
114 |
Q |
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| T |
280323 |
agagatgggattcaatgattatcaaagcaaattaaaagagcaaacaagaaagccatgtcggtttgaattgccacattttactttgcgtattattaatacc |
280224 |
T |
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| Q |
115 |
tctatacaaaaatcaacactcaccattttggaactattattagtttcagtattacccattctttgtttctattctaagcccttg |
198 |
Q |
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| T |
280223 |
tctatacaaaaatcaacactcaccattttggaactattattagtttcagtattacccattctttgtttctattctaagcccttg |
280140 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 184; E-Value: 1e-100
Query Start/End: Original strand, 15 - 198
Target Start/End: Original strand, 635529 - 635712
Alignment:
| Q |
15 |
agagatgggattcaatgattatcaaagcaaattaaaagagcaaacaagaaagccatgtcggtttgaattgccacattttactttgcgtattattaatacc |
114 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
635529 |
agagatgggattcaatgattatcaaagcaaattaaaagagcaaacaagaaagccatgtcggtttgaattgccacattttactttgcgtattattaatacc |
635628 |
T |
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| Q |
115 |
tctatacaaaaatcaacactcaccattttggaactattattagtttcagtattacccattctttgtttctattctaagcccttg |
198 |
Q |
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| T |
635629 |
tctatacaaaaatcaacactcaccattttggaactattattagtttcagtattacccattctttgtttctattctaagcccttg |
635712 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 184; E-Value: 1e-100
Query Start/End: Original strand, 15 - 198
Target Start/End: Original strand, 821332 - 821515
Alignment:
| Q |
15 |
agagatgggattcaatgattatcaaagcaaattaaaagagcaaacaagaaagccatgtcggtttgaattgccacattttactttgcgtattattaatacc |
114 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
821332 |
agagatgggattcaatgattatcaaagcaaattaaaagagcaaacaagaaagccatgtcggtttgaattgccacattttactttgcgtattattaatacc |
821431 |
T |
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| Q |
115 |
tctatacaaaaatcaacactcaccattttggaactattattagtttcagtattacccattctttgtttctattctaagcccttg |
198 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
821432 |
tctatacaaaaatcaacactcaccattttggaactattattagtttcagtattacccattctttgtttctattctaagcccttg |
821515 |
T |
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