View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15858_low_24 (Length: 208)

Name: NF15858_low_24
Description: NF15858
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15858_low_24
NF15858_low_24
[»] chr6 (1 HSPs)
chr6 (6-199)||(27076502-27076695)
[»] chr5 (2 HSPs)
chr5 (1-126)||(26051481-26051606)
chr5 (107-199)||(26051700-26051792)
[»] chr3 (2 HSPs)
chr3 (107-199)||(32894470-32894562)
chr3 (16-80)||(32894206-32894270)


Alignment Details
Target: chr6 (Bit Score: 190; Significance: 1e-103; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 6 - 199
Target Start/End: Original strand, 27076502 - 27076695
Alignment:
Q  6 tttttctttcttttcagttttaataaatctgttccctttgaattttatatatgcgtttctaaattctctatttttacatctcagtatacttatgtttaat 105  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27076502 tttttctttcttttcagttttaataaatctgttccctttgaattttatatatgcgtttctaaattctctatttttacatctcagtatacttatgtttaat 27076601  T
Q  106 tagtagttaaagtgatcaaaatattaaagttctttatatgcatatgtaagcaggatataatattctcttgttagttagatataaataattcttc 199  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27076602 tagtagttaaagtgatcaaaatgttaaagttctttatatgcatatgtaagcaggatataatattctcttgttagttagatataaataattcttc 27076695  T

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Target: chr5 (Bit Score: 98; Significance: 2e-48; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 1 - 126
Target Start/End: Original strand, 26051481 - 26051606
Alignment:
Q  1 agttatttttctttcttttcagttttaataaatctgttccctttgaattttatatatgcgtttctaaattctctatttttacatctcagtatacttatgt 100  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||| |||||||||||||||||||||||||    
T  26051481 agttttttttctttcttttcagttttaataaatctgttccctttgaattttatatatgcgtttctgaattatctgtttttacatctcagtatacttatgt 26051580  T
Q  101 ttaattagtagttaaagtgatcaaaa 126  Q
    ||||||||| || |||||||| ||||    
T  26051581 ttaattagttgtcaaagtgataaaaa 26051606  T

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Target: chr5; HSP #2
Raw Score: 89; E-Value: 4e-43
Query Start/End: Original strand, 107 - 199
Target Start/End: Original strand, 26051700 - 26051792
Alignment:
Q  107 agtagttaaagtgatcaaaatattaaagttctttatatgcatatgtaagcaggatataatattctcttgttagttagatataaataattcttc 199  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26051700 agtagttaaagtgatcaaaatgttaaagttctttatatgcatatgtaagcaggatataatattctcttgttagttagatataaataattcttc 26051792  T

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Target: chr3 (Bit Score: 85; Significance: 1e-40; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 107 - 199
Target Start/End: Original strand, 32894470 - 32894562
Alignment:
Q  107 agtagttaaagtgatcaaaatattaaagttctttatatgcatatgtaagcaggatataatattctcttgttagttagatataaataattcttc 199  Q
    ||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32894470 agtagttaaagtgatcaaaatgttaaaattctttatatgcatatgtaagcaggatataatattctcttgttagttagatataaataattcttc 32894562  T

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Target: chr3; HSP #2
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 16 - 80
Target Start/End: Original strand, 32894206 - 32894270
Alignment:
Q  16 ttttcagttttaataaatctgttccctttgaattttatatatgcgtttctaaattctctattttt 80  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||||| |||| ||| |||||    
T  32894206 ttttcagttttaataaatctgttccctttgaattttatatatgtgtttctgaattatctgttttt 32894270  T

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