View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15858_low_25 (Length: 203)
Name: NF15858_low_25
Description: NF15858
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15858_low_25 |
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| [»] scaffold0272 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 129; Significance: 6e-67; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 129; E-Value: 6e-67
Query Start/End: Original strand, 12 - 172
Target Start/End: Complemental strand, 21188976 - 21188815
Alignment:
| Q |
12 |
gttacattttgttcaatagatttggttgtatacattgtacccnnnnnnn-ctacttggggtttttcatttgttctaagcgattatgttcaatcgcgataa |
110 |
Q |
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| T |
21188976 |
gttacattttgttcaatagatttggttttatacattgtacccaaaaaaaactacttggggtttttcatttgttctaagcgattatgttcaatcgcgataa |
21188877 |
T |
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| Q |
111 |
tgataatgaagacgacaacgaaataagaatgaaatagtgtaatttcaaagaagtgattcttg |
172 |
Q |
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| T |
21188876 |
tgataatgaagacgacaacgaaataagaatgaaatagtgtaatttcaaagaagtgattcttg |
21188815 |
T |
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Target: scaffold0272 (Bit Score: 46; Significance: 2e-17; HSPs: 1)
Name: scaffold0272
Description:
Target: scaffold0272; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 107 - 172
Target Start/End: Original strand, 9873 - 9938
Alignment:
| Q |
107 |
ataatgataatgaagacgacaacgaaataagaatgaaatagtgtaatttcaaagaagtgattcttg |
172 |
Q |
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|||||||| |||| || ||||||||||| ||||||||||||||||||||| ||||||||||||||| |
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| T |
9873 |
ataatgatgatgacgatgacaacgaaattagaatgaaatagtgtaatttcgaagaagtgattcttg |
9938 |
T |
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