View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15858_low_3 (Length: 546)
Name: NF15858_low_3
Description: NF15858
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15858_low_3 |
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Alignment Details
Target: chr4 (Bit Score: 501; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 501; E-Value: 0
Query Start/End: Original strand, 1 - 533
Target Start/End: Original strand, 7947192 - 7947724
Alignment:
| Q |
1 |
tagtgggataaggcttggttgtttgtaaaataaagtagatactctcannnnnnnncatgtatcaaagaagttttcaaactgtcatgcactttgatcaaga |
100 |
Q |
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| T |
7947192 |
tagtgggataaggcttggttgtttgtaaaataaagtagatactctcattttttttcatgtatcaaagaagttttcaaactgtcatgcactttgatcaaga |
7947291 |
T |
|
| Q |
101 |
aggaagcatttccgtgggatatttcttgcaacttaaatgaactaaaaccaggctcttttgaaaaaacatatgtgttttgtttgcatgggattgtacattg |
200 |
Q |
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| T |
7947292 |
aggaagcatttccgtgggatatttcttgcaacttaaatgaactaaaaccaggctcttttgaaaaaacatatgtgttttgtttgcatgggattgtacattg |
7947391 |
T |
|
| Q |
201 |
gagcaacaaagtggatgaactctatgttgtgagttaactaaactgttttgtgcttagttcttgcactaagcaatttactcaaattatgcttttgtttgat |
300 |
Q |
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| T |
7947392 |
gagcaacaaagtggatgaactctatgttgtgagttaactaaactgttttgcgcttagttcttgcactaagcaattcactcaaattatgcttttgtttgat |
7947491 |
T |
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| Q |
301 |
atctgcaggacacgaattttacgtcatatggcatctgagttgaaattgaatatgaggagtgatggttttgtgaatgttaacgatttgctaaagctgaatt |
400 |
Q |
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| T |
7947492 |
atctgcaggacacgaattttacgtcatatggcatctgagttgaaattgaatatgaggagtgatggttttgtgaatgttaacgatttgctaaagctgaatt |
7947591 |
T |
|
| Q |
401 |
tgaagacatttgctaatattcctctacgatcccacactattgatgacattagggaggtcagttgatctaaatttaatgtacgtttgttttctttttgttt |
500 |
Q |
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| T |
7947592 |
tgaagacatttgctaatattcctctacgatcccacactattgatgacattagggaggtcagttgatctaaatttaatgtacgtttgttttctttttgttt |
7947691 |
T |
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| Q |
501 |
gcacgcattctcatcgcgttttatatgctgttc |
533 |
Q |
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| T |
7947692 |
gcacgcattctcatcgcgttttatatgctgttc |
7947724 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 178; E-Value: 9e-96
Query Start/End: Original strand, 209 - 470
Target Start/End: Original strand, 32999226 - 32999487
Alignment:
| Q |
209 |
aagtggatgaactctatgttgtgagttaactaaactgttttgtgcttagttcttgcactaagcaatttactcaaattatgcttttgtttgatatctgcag |
308 |
Q |
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||||||||||||||||| | ||| | || ||||||||||| |||||| |||||||||||||||||| ||||||||||||||||||||| |||||||||| |
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| T |
32999226 |
aagtggatgaactctatactatgactgaattaaactgttttctgcttaattcttgcactaagcaattcactcaaattatgcttttgtttaatatctgcag |
32999325 |
T |
|
| Q |
309 |
gacacgaattttacgtcatatggcatctgagttgaaattgaatatgaggagtgatggttttgtgaatgttaacgatttgctaaagctgaatttgaagaca |
408 |
Q |
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| T |
32999326 |
gacgcgaattttacgtcatatggcatctgacttgaaattgaatatgagaagtgatggttatgtgaatgttaatgatttactatacctgaatttgaaaaca |
32999425 |
T |
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| Q |
409 |
tttgctaatattcctctacgatcccacactattgatgacattagggaggtcagttgatctaa |
470 |
Q |
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| T |
32999426 |
tttgctaatattcctctacgatcccacactattgacgacatcagggaggtcagttgatctaa |
32999487 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 143; Significance: 7e-75; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 143; E-Value: 7e-75
Query Start/End: Original strand, 247 - 470
Target Start/End: Original strand, 10803409 - 10803636
Alignment:
| Q |
247 |
tttgtgcttagttcttgcactaagcaatttactcaaattatgcttttgtttgatatctgcaggacacgaattttacgtcatatggcatctgagttgaaat |
346 |
Q |
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|||||||||| ||||||||| |||||||| |||||||||||||| |||||| |||||||||||||||||||| ||||||||||||| ||||||||||||| |
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| T |
10803409 |
tttgtgcttaattcttgcaccaagcaattcactcaaattatgctgttgtttaatatctgcaggacacgaattctacgtcatatggcgtctgagttgaaat |
10803508 |
T |
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| Q |
347 |
tgaatatg----aggagtgatggttttgtgaatgttaacgatttgctaaagctgaatttgaagacatttgctaatattcctctacgatcccacactattg |
442 |
Q |
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| T |
10803509 |
tgaatatatatcagaagtgatggttatgtgaatgttaatgatttactaaacctaaatttcaagacatttgctaatattcctctacgatcccacactattg |
10803608 |
T |
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| Q |
443 |
atgacattagggaggtcagttgatctaa |
470 |
Q |
| |
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|||| |||||||||||| |||||||||| |
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| T |
10803609 |
atgatattagggaggtctgttgatctaa |
10803636 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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