View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15858_low_5 (Length: 388)

Name: NF15858_low_5
Description: NF15858
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15858_low_5
NF15858_low_5
[»] chr1 (6 HSPs)
chr1 (74-382)||(1939936-1940247)
chr1 (17-78)||(1940955-1941016)
chr1 (17-86)||(14160150-14160219)
chr1 (19-87)||(28139697-28139765)
chr1 (19-86)||(28142948-28143015)
chr1 (17-86)||(25663939-25664009)
[»] chr4 (6 HSPs)
chr4 (17-86)||(48962558-48962627)
chr4 (17-89)||(54899002-54899074)
chr4 (19-86)||(12705177-12705244)
chr4 (17-85)||(22885141-22885209)
chr4 (17-85)||(22936805-22936873)
chr4 (17-88)||(12193656-12193726)
[»] chr2 (4 HSPs)
chr2 (17-86)||(6278013-6278082)
chr2 (19-87)||(35079386-35079454)
chr2 (19-86)||(35076108-35076175)
chr2 (17-86)||(4697748-4697816)
[»] chr7 (4 HSPs)
chr7 (19-88)||(1634540-1634609)
chr7 (19-86)||(1637765-1637832)
chr7 (19-86)||(5190548-5190615)
chr7 (19-86)||(44673880-44673947)
[»] chr8 (3 HSPs)
chr8 (19-87)||(2848654-2848722)
chr8 (19-86)||(5951320-5951387)
chr8 (19-86)||(33382575-33382641)
[»] chr5 (4 HSPs)
chr5 (19-87)||(22038299-22038367)
chr5 (19-86)||(22035074-22035141)
chr5 (42-86)||(36699383-36699427)
chr5 (42-78)||(36699689-36699725)
[»] chr3 (3 HSPs)
chr3 (19-87)||(10558895-10558963)
chr3 (17-87)||(19192933-19193003)
chr3 (19-87)||(28717577-28717645)
[»] chr6 (6 HSPs)
chr6 (19-86)||(963953-964020)
chr6 (19-86)||(16567665-16567732)
chr6 (19-84)||(5189747-5189812)
chr6 (26-87)||(20110881-20110942)
chr6 (19-87)||(33661394-33661461)
chr6 (17-84)||(12489941-12490007)
[»] scaffold0086 (1 HSPs)
scaffold0086 (20-86)||(23745-23811)
[»] scaffold1484 (1 HSPs)
scaffold1484 (19-87)||(1338-1406)
[»] scaffold0012 (1 HSPs)
scaffold0012 (17-86)||(156367-156437)
[»] scaffold0146 (2 HSPs)
scaffold0146 (19-86)||(29028-29096)
scaffold0146 (19-86)||(35036-35104)


Alignment Details
Target: chr1 (Bit Score: 282; Significance: 1e-158; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 282; E-Value: 1e-158
Query Start/End: Original strand, 74 - 382
Target Start/End: Complemental strand, 1940247 - 1939936
Alignment:
Q  74 cctagtgtcatcacttctgccattatattgcctatatgttcgtgttattatcatatggtccaaacagtcgtttacacaaagaacgtaaggtttttaaaca 173  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1940247 cctagtgtcatcacttatgccattatattgcctatatgttcgtgttattatcatatggtccaaacagtcgtttacacaaagaacgtaaggtttttaaaca 1940148  T
Q  174 agtttttagcatgacaataggttgcacattttagtgaaagcggttacattcaagcaattttcaactacaacccctgc---attctttgtataaccgaaat 270  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||   ||||||||||||||||||||    
T  1940147 agtttttagcatgacaataggttgcacattttagtgaaagcggttacactcaagcaattttcaactacaacccctgcaatattctttgtataaccgaaat 1940048  T
Q  271 tccaatcaagaaaaaatgccatgcagcataacacatacataaatagcaataatggcataaaatagggcaacgagcatacaacattaaacctaagttcata 370  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  1940047 tccaatcaagaaaaaatgccatgcagcataacacatacataaatagcaataatggcataaaatagggcaactagcatacaacattaaacctaagttcata 1939948  T
Q  371 gttcttctcact 382  Q
    |||||| |||||    
T  1939947 gttcttttcact 1939936  T

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Target: chr1; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 17 - 78
Target Start/End: Complemental strand, 1941016 - 1940955
Alignment:
Q  17 ataatcacctgaactcaacctaaattacataaaaactataacaaaagtgctatatgacctag 78  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1941016 ataatcacctgaactcaacctaaattacataaaaactataacaaaagtgctatatgacctag 1940955  T

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Target: chr1; HSP #3
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 17 - 86
Target Start/End: Original strand, 14160150 - 14160219
Alignment:
Q  17 ataatcacctgaactcaacctaaattacataaaaactataacaaaagtgctatatgacctagtgtcatca 86  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||| ||| ||||||||||||||||    
T  14160150 ataatcacctgaactcaaccaaaattacataaaaactataacaaaagtgttatgtgacctagtgtcatca 14160219  T

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Target: chr1; HSP #4
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 19 - 87
Target Start/End: Original strand, 28139697 - 28139765
Alignment:
Q  19 aatcacctgaactcaacctaaattacataaaaactataacaaaagtgctatatgacctagtgtcatcac 87  Q
    ||||||| |||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||    
T  28139697 aatcacccgaactcaaccaaaattacataaaaactataacaaaagtgatatatgacctagtgtcatcac 28139765  T

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Target: chr1; HSP #5
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 19 - 86
Target Start/End: Original strand, 28142948 - 28143015
Alignment:
Q  19 aatcacctgaactcaacctaaattacataaaaactataacaaaagtgctatatgacctagtgtcatca 86  Q
    ||||||| |||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||    
T  28142948 aatcacccgaactcaaccaaaattacataaaaactataacaaaagtgatatatgacctagtgtcatca 28143015  T

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Target: chr1; HSP #6
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 17 - 86
Target Start/End: Original strand, 25663939 - 25664009
Alignment:
Q  17 ataatcacctgaactcaac-ctaaattacataaaaactataacaaaagtgctatatgacctagtgtcatca 86  Q
    ||||||||||||||||| | | ||| |||||||||||||||||||||||||||||||||||||||||||||    
T  25663939 ataatcacctgaactcagctcaaaagtacataaaaactataacaaaagtgctatatgacctagtgtcatca 25664009  T

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Target: chr4 (Bit Score: 66; Significance: 4e-29; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 17 - 86
Target Start/End: Original strand, 48962558 - 48962627
Alignment:
Q  17 ataatcacctgaactcaacctaaattacataaaaactataacaaaagtgctatatgacctagtgtcatca 86  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  48962558 ataatcacctgaactcaaccaaaattacataaaaactataacaaaagtgctatatgacctagtgtcatca 48962627  T

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Target: chr4; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 17 - 89
Target Start/End: Complemental strand, 54899074 - 54899002
Alignment:
Q  17 ataatcacctgaactcaacctaaattacataaaaactataacaaaagtgctatatgacctagtgtcatcactt 89  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  54899074 ataatcacctgaactcaaccaaaattacataaaaactataacaaaagtgttatatgacctagtgtcatcactt 54899002  T

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Target: chr4; HSP #3
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 19 - 86
Target Start/End: Complemental strand, 12705244 - 12705177
Alignment:
Q  19 aatcacctgaactcaacctaaattacataaaaactataacaaaagtgctatatgacctagtgtcatca 86  Q
    |||||||||||||||||| |||||| |||||||||||||| |||||||||||||||||||||||||||    
T  12705244 aatcacctgaactcaaccaaaattatataaaaactataacgaaagtgctatatgacctagtgtcatca 12705177  T

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Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 17 - 85
Target Start/End: Original strand, 22885141 - 22885209
Alignment:
Q  17 ataatcacctgaactcaacctaaattacataaaaactataacaaaagtgctatatgacctagtgtcatc 85  Q
    ||||||||| |||||| ||  |||||||||||||||||||| |||| || |||| | ||||||||||||    
T  22885141 ataatcacccgaactcgactaaaattacataaaaactataataaaaatgttatacgtcctagtgtcatc 22885209  T

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Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 17 - 85
Target Start/End: Original strand, 22936805 - 22936873
Alignment:
Q  17 ataatcacctgaactcaacctaaattacataaaaactataacaaaagtgctatatgacctagtgtcatc 85  Q
    ||||||||| |||||| ||  |||||||||||||||||||| |||| || |||| | ||||||||||||    
T  22936805 ataatcacccgaactcgactaaaattacataaaaactataataaaaatgttatacgtcctagtgtcatc 22936873  T

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Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 17 - 88
Target Start/End: Complemental strand, 12193726 - 12193656
Alignment:
Q  17 ataatcacctgaactcaacctaaattacataaaaactataacaaaagtgctatatgacctagtgtcatcact 88  Q
    |||||||||||||||  ||  ||| |||||||||||| |||||||| || | ||||||||||||||||||||    
T  12193726 ataatcacctgaacttgactaaaactacataaaaactgtaacaaaa-tgatgtatgacctagtgtcatcact 12193656  T

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Target: chr2 (Bit Score: 66; Significance: 4e-29; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 17 - 86
Target Start/End: Original strand, 6278013 - 6278082
Alignment:
Q  17 ataatcacctgaactcaacctaaattacataaaaactataacaaaagtgctatatgacctagtgtcatca 86  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  6278013 ataatcacctgaactcaaccaaaattacataaaaactataacaaaagtgctatatgacctagtgtcatca 6278082  T

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Target: chr2; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 19 - 87
Target Start/End: Complemental strand, 35079454 - 35079386
Alignment:
Q  19 aatcacctgaactcaacctaaattacataaaaactataacaaaagtgctatatgacctagtgtcatcac 87  Q
    ||||||| |||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||    
T  35079454 aatcacccgaactcaaccaaaattacataaaaactataacaaaagtgatatatgacctagtgtcatcac 35079386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 19 - 86
Target Start/End: Complemental strand, 35076175 - 35076108
Alignment:
Q  19 aatcacctgaactcaacctaaattacataaaaactataacaaaagtgctatatgacctagtgtcatca 86  Q
    ||||||| |||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||    
T  35076175 aatcacccgaactcaaccaaaattacataaaaactataacaaaagtgatatatgacctagtgtcatca 35076108  T

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Target: chr2; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 17 - 86
Target Start/End: Original strand, 4697748 - 4697816
Alignment:
Q  17 ataatcacctgaactcaacctaaattacataaaaactataacaaaagtgctatatgacctagtgtcatca 86  Q
    ||||||||||||||| |||| ||| ||||||||||||||||||||| || | ||||||||| ||||||||    
T  4697748 ataatcacctgaacttaaccaaaactacataaaaactataacaaaa-tgatgtatgacctaatgtcatca 4697816  T

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Target: chr7 (Bit Score: 58; Significance: 3e-24; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 19 - 88
Target Start/End: Original strand, 1634540 - 1634609
Alignment:
Q  19 aatcacctgaactcaacctaaattacataaaaactataacaaaagtgctatatgacctagtgtcatcact 88  Q
    ||||||| |||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  1634540 aatcacccgaactcaaccaaaattacataaaaactataacaaaagtgatatatgacctagtgtcatcact 1634609  T

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Target: chr7; HSP #2
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 19 - 86
Target Start/End: Original strand, 1637765 - 1637832
Alignment:
Q  19 aatcacctgaactcaacctaaattacataaaaactataacaaaagtgctatatgacctagtgtcatca 86  Q
    ||||||| |||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||    
T  1637765 aatcacccgaactcaaccaaaattacataaaaactataacaaaagtgatatatgacctagtgtcatca 1637832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 19 - 86
Target Start/End: Original strand, 5190548 - 5190615
Alignment:
Q  19 aatcacctgaactcaacctaaattacataaaaactataacaaaagtgctatatgacctagtgtcatca 86  Q
    ||||||| |||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||    
T  5190548 aatcacccgaactcaaccaaaattacataaaaactataacaaaagtgatatatgacctagtgtcatca 5190615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 19 - 86
Target Start/End: Original strand, 44673880 - 44673947
Alignment:
Q  19 aatcacctgaactcaacctaaattacataaaaactataacaaaagtgctatatgacctagtgtcatca 86  Q
    ||||||| |||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||    
T  44673880 aatcacccgaactcaaccaaaattacataaaaactataacaaaagtgatatatgacctagtgtcatca 44673947  T

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Target: chr8 (Bit Score: 57; Significance: 1e-23; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 19 - 87
Target Start/End: Original strand, 2848654 - 2848722
Alignment:
Q  19 aatcacctgaactcaacctaaattacataaaaactataacaaaagtgctatatgacctagtgtcatcac 87  Q
    ||||||| |||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||    
T  2848654 aatcacccgaactcaaccaaaattacataaaaactataacaaaagtgatatatgacctagtgtcatcac 2848722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 19 - 86
Target Start/End: Complemental strand, 5951387 - 5951320
Alignment:
Q  19 aatcacctgaactcaacctaaattacataaaaactataacaaaagtgctatatgacctagtgtcatca 86  Q
    ||||||| |||||||||| |||||||||||||||||||||||||||| ||||||||||| ||||||||    
T  5951387 aatcacccgaactcaaccaaaattacataaaaactataacaaaagtgatatatgacctaatgtcatca 5951320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 19 - 86
Target Start/End: Complemental strand, 33382641 - 33382575
Alignment:
Q  19 aatcacctgaactcaacctaaattacataaaaactataacaaaagtgctatatgacctagtgtcatca 86  Q
    ||||||| |||||||||| ||||||||||||| |||||||||||||| ||||||||||||||||||||    
T  33382641 aatcacccgaactcaaccaaaattacataaaa-ctataacaaaagtgatatatgacctagtgtcatca 33382575  T

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Target: chr5 (Bit Score: 57; Significance: 1e-23; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 19 - 87
Target Start/End: Complemental strand, 22038367 - 22038299
Alignment:
Q  19 aatcacctgaactcaacctaaattacataaaaactataacaaaagtgctatatgacctagtgtcatcac 87  Q
    ||||||| |||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||    
T  22038367 aatcacccgaactcaaccaaaattacataaaaactataacaaaagtgatatatgacctagtgtcatcac 22038299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 19 - 86
Target Start/End: Complemental strand, 22035141 - 22035074
Alignment:
Q  19 aatcacctgaactcaacctaaattacataaaaactataacaaaagtgctatatgacctagtgtcatca 86  Q
    ||||||| |||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||    
T  22035141 aatcacccgaactcaaccaaaattacataaaaactataacaaaagtgatatatgacctagtgtcatca 22035074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 42 - 86
Target Start/End: Complemental strand, 36699427 - 36699383
Alignment:
Q  42 tacataaaaactataacaaaagtgctatatgacctagtgtcatca 86  Q
    ||||||||||||||| |||| ||||||||||||||||||||||||    
T  36699427 tacataaaaactatagcaaaggtgctatatgacctagtgtcatca 36699383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 42 - 78
Target Start/End: Complemental strand, 36699725 - 36699689
Alignment:
Q  42 tacataaaaactataacaaaagtgctatatgacctag 78  Q
    ||||||||||||||| |||| ||||||||||||||||    
T  36699725 tacataaaaactatagcaaaggtgctatatgacctag 36699689  T

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Target: chr3 (Bit Score: 57; Significance: 1e-23; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 19 - 87
Target Start/End: Original strand, 10558895 - 10558963
Alignment:
Q  19 aatcacctgaactcaacctaaattacataaaaactataacaaaagtgctatatgacctagtgtcatcac 87  Q
    ||||||| |||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||    
T  10558895 aatcacccgaactcaaccaaaattacataaaaactataacaaaagtgatatatgacctagtgtcatcac 10558963  T

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Target: chr3; HSP #2
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 17 - 87
Target Start/End: Complemental strand, 19193003 - 19192933
Alignment:
Q  17 ataatcacctgaactcaacctaaattacataaaaactataacaaaagtgctatatgacctagtgtcatcac 87  Q
    |||||||||| ||||||||| |||||||||||||||||||||||||||| ||| || ||||||||||||||    
T  19193003 ataatcacctaaactcaaccaaaattacataaaaactataacaaaagtgttatttgtcctagtgtcatcac 19192933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 19 - 87
Target Start/End: Original strand, 28717577 - 28717645
Alignment:
Q  19 aatcacctgaactcaacctaaattacataaaaactataacaaaagtgctatatgacctagtgtcatcac 87  Q
    ||||||||||||||| |  ||||||||||||| || ||||||||||| ||||||| |||||| ||||||    
T  28717577 aatcacctgaactcatctaaaattacataaaagctgtaacaaaagtgatatatgatctagtgccatcac 28717645  T

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Target: chr6 (Bit Score: 56; Significance: 4e-23; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 19 - 86
Target Start/End: Complemental strand, 964020 - 963953
Alignment:
Q  19 aatcacctgaactcaacctaaattacataaaaactataacaaaagtgctatatgacctagtgtcatca 86  Q
    ||||||| |||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||    
T  964020 aatcacccgaactcaaccaaaattacataaaaactataacaaaagtgatatatgacctagtgtcatca 963953  T

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Target: chr6; HSP #2
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 19 - 86
Target Start/End: Original strand, 16567665 - 16567732
Alignment:
Q  19 aatcacctgaactcaacctaaattacataaaaactataacaaaagtgctatatgacctagtgtcatca 86  Q
    ||||||| |||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||    
T  16567665 aatcacccgaactcaaccaaaattacataaaaactataacaaaagtgatatatgacctagtgtcatca 16567732  T

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Target: chr6; HSP #3
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 19 - 84
Target Start/End: Complemental strand, 5189812 - 5189747
Alignment:
Q  19 aatcacctgaactcaacctaaattacataaaaactataacaaaagtgctatatgacctagtgtcat 84  Q
    ||||||| |||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||    
T  5189812 aatcacccgaactcaaccaaaattacataaaaactataacaaaagtgatatatgacctagtgtcat 5189747  T

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Target: chr6; HSP #4
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 26 - 87
Target Start/End: Original strand, 20110881 - 20110942
Alignment:
Q  26 tgaactcaacctaaattacataaaaactataacaaaagtgctatatgacctagtgtcatcac 87  Q
    ||||||||||  |||||||||||||||||||||||||||||||||||| ||||| |||||||    
T  20110881 tgaactcaactaaaattacataaaaactataacaaaagtgctatatgaactagtctcatcac 20110942  T

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Target: chr6; HSP #5
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 19 - 87
Target Start/End: Complemental strand, 33661461 - 33661394
Alignment:
Q  19 aatcacctgaactcaacctaa-attacataaaaactataacaaaagtgctatatgacctagtgtcatcac 87  Q
    ||||||||||||||| ||||| ||| ||||||||||||| ||||| || |||||||||||||||||||||    
T  33661461 aatcacctgaactca-cctaacattgcataaaaactata-caaaactgatatatgacctagtgtcatcac 33661394  T

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Target: chr6; HSP #6
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 17 - 84
Target Start/End: Original strand, 12489941 - 12490007
Alignment:
Q  17 ataatcacctgaactcaacctaaattacataaaaactataacaaaagtgctatatgacctagtgtcat 84  Q
    ||||||||||||||| |||| ||| |||||| |||||||||||||| || | ||||||||| ||||||    
T  12489941 ataatcacctgaacttaaccaaaactacatataaactataacaaaa-tgatgtatgacctaatgtcat 12490007  T

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Target: scaffold0086 (Bit Score: 55; Significance: 2e-22; HSPs: 1)
Name: scaffold0086
Description:

Target: scaffold0086; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 20 - 86
Target Start/End: Complemental strand, 23811 - 23745
Alignment:
Q  20 atcacctgaactcaacctaaattacataaaaactataacaaaagtgctatatgacctagtgtcatca 86  Q
    ||||||||||||||||  |||||||||||||||||||||||||||||||||||||||| ||||||||    
T  23811 atcacctgaactcaacaaaaattacataaaaactataacaaaagtgctatatgacctaatgtcatca 23745  T

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Target: scaffold1484 (Bit Score: 53; Significance: 3e-21; HSPs: 1)
Name: scaffold1484
Description:

Target: scaffold1484; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 19 - 87
Target Start/End: Complemental strand, 1406 - 1338
Alignment:
Q  19 aatcacctgaactcaacctaaattacataaaaactataacaaaagtgctatatgacctagtgtcatcac 87  Q
    ||||||| |||||||||| |||||||||||||||||||| ||||||| |||||||||||||||||||||    
T  1406 aatcacccgaactcaaccaaaattacataaaaactataataaaagtgatatatgacctagtgtcatcac 1338  T

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Target: scaffold0012 (Bit Score: 47; Significance: 1e-17; HSPs: 1)
Name: scaffold0012
Description:

Target: scaffold0012; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 17 - 86
Target Start/End: Complemental strand, 156437 - 156367
Alignment:
Q  17 ataatcacctgaactcaac-ctaaattacataaaaactataacaaaagtgctatatgacctagtgtcatca 86  Q
    ||||||||||||||||| | | ||| |||||||||||||||||||||||||||||||||||||||| ||||    
T  156437 ataatcacctgaactcagctcaaaaatacataaaaactataacaaaagtgctatatgacctagtgttatca 156367  T

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Target: scaffold0146 (Bit Score: 45; Significance: 2e-16; HSPs: 2)
Name: scaffold0146
Description:

Target: scaffold0146; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 19 - 86
Target Start/End: Complemental strand, 29096 - 29028
Alignment:
Q  19 aatcacctgaactcaac-ctaaattacataaaaactataacaaaagtgctatatgacctagtgtcatca 86  Q
    |||||| |||||||||| | ||| |||||||||||||||||||||||||||||||||||||||| ||||    
T  29096 aatcacttgaactcaactcaaaagtacataaaaactataacaaaagtgctatatgacctagtgttatca 29028  T

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Target: scaffold0146; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 19 - 86
Target Start/End: Complemental strand, 35104 - 35036
Alignment:
Q  19 aatcacctgaactcaac-ctaaattacataaaaactataacaaaagtgctatatgacctagtgtcatca 86  Q
    |||||| |||||||||| | ||| |||||||||||||||||||||||||||||||||||||||| ||||    
T  35104 aatcacttgaactcaactcaaaagtacataaaaactataacaaaagtgctatatgacctagtgttatca 35036  T

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