View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15858_low_9 (Length: 346)
Name: NF15858_low_9
Description: NF15858
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15858_low_9 |
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Alignment Details
Target: chr1 (Bit Score: 297; Significance: 1e-167; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 297; E-Value: 1e-167
Query Start/End: Original strand, 24 - 328
Target Start/End: Original strand, 26155561 - 26155865
Alignment:
| Q |
24 |
acagtgaagatgggctctcatgtctcaaaacaagttgaaagaagaaagacaatccacaccgaaaagaaaactctaaccgagcttaaaacctcaggagaag |
123 |
Q |
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||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
26155561 |
acagtgaagatgggctctcatgtatcaaaacaagttgaaagaagaaagacaatccacaccgaaaagaaaactctaaccgaacttaaaacctcaggagaag |
26155660 |
T |
|
| Q |
124 |
actaccctggttctgaatatcatccatcagatagaaaaaactggatgaatggtctcaacccagagaaagttcatatcaatcaaattgtatggccaggaac |
223 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26155661 |
actaccctggttctgaatatcatccatcagatagaaaaaactggatgaatggtctcaacccagagaaagttcatatcaatcaaattgtatggccaggaac |
26155760 |
T |
|
| Q |
224 |
acatgattctgctaccaacaagattggtttcccactcatcactcgaccttttgctcaatgccaatctttgtctatctatcgacagctcgctttaggcaca |
323 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26155761 |
acatgattctgctaccaacaagattggtttcccactcatcactcgaccttttgctcaatgccaatctttgtctatctatcgacagctcgctttaggcaca |
26155860 |
T |
|
| Q |
324 |
cgtgt |
328 |
Q |
| |
|
||||| |
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|
| T |
26155861 |
cgtgt |
26155865 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 297; E-Value: 1e-167
Query Start/End: Original strand, 24 - 328
Target Start/End: Original strand, 26168859 - 26169163
Alignment:
| Q |
24 |
acagtgaagatgggctctcatgtctcaaaacaagttgaaagaagaaagacaatccacaccgaaaagaaaactctaaccgagcttaaaacctcaggagaag |
123 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
26168859 |
acagtgaagatgggctctcatgtatcaaaacaagttgaaagaagaaagacaatccacaccgaaaagaaaactctaaccgaacttaaaacctcaggagaag |
26168958 |
T |
|
| Q |
124 |
actaccctggttctgaatatcatccatcagatagaaaaaactggatgaatggtctcaacccagagaaagttcatatcaatcaaattgtatggccaggaac |
223 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26168959 |
actaccctggttctgaatatcatccatcagatagaaaaaactggatgaatggtctcaacccagagaaagttcatatcaatcaaattgtatggccaggaac |
26169058 |
T |
|
| Q |
224 |
acatgattctgctaccaacaagattggtttcccactcatcactcgaccttttgctcaatgccaatctttgtctatctatcgacagctcgctttaggcaca |
323 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26169059 |
acatgattctgctaccaacaagattggtttcccactcatcactcgaccttttgctcaatgccaatctttgtctatctatcgacagctcgctttaggcaca |
26169158 |
T |
|
| Q |
324 |
cgtgt |
328 |
Q |
| |
|
||||| |
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|
| T |
26169159 |
cgtgt |
26169163 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 33 - 235
Target Start/End: Complemental strand, 28095187 - 28094985
Alignment:
| Q |
33 |
atgggctctcatgtctcaaaacaagttgaaagaagaaagacaatccacaccgaaaagaaaactctaaccgagcttaaaacctcaggagaagactaccctg |
132 |
Q |
| |
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||||| ||||| || || |||||| | |||| | |||| |||||||| || ||| ||||||||||| | || || |||| || ||||||| ||||||||| |
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| T |
28095187 |
atgggttctcaggtgtcgaaacaaatcgaaaaacgaaaaacaatccaaacagaagagaaaactctatctgatctaaaaagcttaggagaaaactaccctg |
28095088 |
T |
|
| Q |
133 |
gttctgaatatcatccatcagatagaaaaaactggatgaatggtctcaacccagagaaagttcatatcaatcaaattgtatggccaggaacacatgattc |
232 |
Q |
| |
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||| ||| || || |||||||| ||||||||||||||| ||||||||| || ||| || | ||||| ||||| ||||| |||||||||||||| |
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| T |
28095087 |
gttgtgattaccacccatcagacagaaaaaactggatggcaaatctcaaccctgacaaacttaagatcaaaatgattgtttggcctggaacacatgattc |
28094988 |
T |
|
| Q |
233 |
tgc |
235 |
Q |
| |
|
||| |
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|
| T |
28094987 |
tgc |
28094985 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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