View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15859_low_1 (Length: 542)
Name: NF15859_low_1
Description: NF15859
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15859_low_1 |
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| [»] chr1 (3 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 472; Significance: 0; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 472; E-Value: 0
Query Start/End: Original strand, 18 - 542
Target Start/End: Original strand, 40651974 - 40652506
Alignment:
| Q |
18 |
aatttcaatacttgaatatgattaatcgttcgtaatccagaactttaatcatcaatcagttcataaaatacataataaactctaaccaggttaggaaaat |
117 |
Q |
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| T |
40651974 |
aatttcaatacttgaatatgattaatcgttcataatccagaactttaatcatcaatcagttcataaaatacataataaactctaaccaggttaggaaaat |
40652073 |
T |
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| Q |
118 |
aaggcagtgtaacattctttttcataactcacggtcaaagctgtcgcaaacaaatcaccattatgcattatcatgcagtaccaagtggtacatatggaac |
217 |
Q |
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| T |
40652074 |
aagacagtgtaacattctttttcataactcacggtcaaagctgtcgcaaacaaatcaccattatacattatcatgcagtaccaagtggtacatatggaac |
40652173 |
T |
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| Q |
218 |
aaacttataaccaaatttcaacattacat--------tactcacaaaatagacggcacactcctatacgttgtctgaagctgcaaaaaagacatatataa |
309 |
Q |
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| T |
40652174 |
aaacttataaccaaatttcaacattacatcattagattactcacaaaatagacggcacactcctatacgctgtctgaagctgcaaaaaagacatatgtaa |
40652273 |
T |
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| Q |
310 |
tataactgattgattaactatccaccaaacattttatgagagctttaactttgcccttacatgacctttagaaatctgaaattgttcggttatacctaaa |
409 |
Q |
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| T |
40652274 |
tgtaactgattgattaactacccaccaaacattttatgagagctttaactttgcccttacatgacctttagaaatctgaaattgttcggttatacctaaa |
40652373 |
T |
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| Q |
410 |
tgagccatcaaaagccagacatgggtaagcaactcaccaccttgggtgagttgcttagcatgttgaagtcctctacattggcttgcggcatgacacaaca |
509 |
Q |
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| T |
40652374 |
tgagccatcaaaagccagacatgggtaagcaactcaccaccttgggtgagttgcttagcatgttgaagtcctctacactggcttgcggcatgacacaaca |
40652473 |
T |
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| Q |
510 |
tctccacccaaacatgacttatcatttcccatt |
542 |
Q |
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| T |
40652474 |
tctccacccaaacatgacttatcatttcccatt |
40652506 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 151; E-Value: 1e-79
Query Start/End: Original strand, 332 - 542
Target Start/End: Original strand, 40643626 - 40643836
Alignment:
| Q |
332 |
caccaaacattttatgagagctttaactttgcccttacatgacctttagaaatctgaaattgttcggttatacctaaatgagccatcaaaagccagacat |
431 |
Q |
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| T |
40643626 |
caccaaacactttatgagagcttcaactttgcccttacatgacccttagaaatctggaattgttcagttatgcctaaatgagccatcaaaagccagacat |
40643725 |
T |
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| Q |
432 |
gggtaagcaactcaccaccttgggtgagttgcttagcatgttgaagtcctctacattggcttgcggcatgacacaacatctccacccaaacatgacttat |
531 |
Q |
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| T |
40643726 |
gggtaagcaactcaccaccctggctaagttgcctagcatgatgaagccctctacattgacttgctgcatgacacagcatctccacccaaacatgacttat |
40643825 |
T |
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| Q |
532 |
catttcccatt |
542 |
Q |
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| T |
40643826 |
catttcccatt |
40643836 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 150; E-Value: 5e-79
Query Start/End: Original strand, 337 - 542
Target Start/End: Original strand, 40642441 - 40642646
Alignment:
| Q |
337 |
aacattttatgagagctttaactttgcccttacatgacctttagaaatctgaaattgttcggttatacctaaatgagccatcaaaagccagacatgggta |
436 |
Q |
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| T |
40642441 |
aacattttataagaacgtcaactttgcccttacatgacctttagaaatctgaaattgttcggttatacctaaatgagccatcaaaagctagacatgggta |
40642540 |
T |
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| Q |
437 |
agcaactcaccaccttgggtgagttgcttagcatgttgaagtcctctacattggcttgcggcatgacacaacatctccacccaaacatgacttatcattt |
536 |
Q |
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| T |
40642541 |
agaaactcgccaccctggctaagctgcttagcatgatgaagtcctctacattggctagctgcatgacacaacatctccacccaaacatgacttatcattt |
40642640 |
T |
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| Q |
537 |
cccatt |
542 |
Q |
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|||||| |
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| T |
40642641 |
cccatt |
40642646 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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