View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15859_low_3 (Length: 263)
Name: NF15859_low_3
Description: NF15859
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15859_low_3 |
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Alignment Details
Target: chr6 (Bit Score: 228; Significance: 1e-126; HSPs: 6)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 9 - 248
Target Start/End: Complemental strand, 1890810 - 1890571
Alignment:
| Q |
9 |
agcataggcaacaaagacatgattgttcatcccttgaagtgtggctgctttgaacaaagtgagtaaagccatttcaatagtttcctgtcctatgatcacc |
108 |
Q |
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| T |
1890810 |
agcataggcaacaaagacatgattgttcatcccttgaagtgtggctgctttgaacaaagtgagtaaagccatttcaatagtttcctgtcctatgatcacc |
1890711 |
T |
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| Q |
109 |
acaggtggcaaaacatccttgtaaaatgaccatcttcttgtcatattttctctgacttctaagttctatcagttacacaacaatcacaaattctgctgaa |
208 |
Q |
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| T |
1890710 |
acaggtggcaaaacatccttgtaaaaggaccatcttcttctcatattttctctgacttctaagttctatcagttacacaacaatcacaaattctgctgaa |
1890611 |
T |
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| Q |
209 |
gttcagaatttctgtgagatgtttttcatgatgaggtttg |
248 |
Q |
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| T |
1890610 |
gttcagaatttctatgagatgtttttcatgatgaggtttg |
1890571 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 16 - 152
Target Start/End: Complemental strand, 1895653 - 1895517
Alignment:
| Q |
16 |
gcaacaaagacatgattgttcatcccttgaagtgtggctgctttgaacaaagtgagtaaagccatttcaatagtttcctgtcctatgatcaccacaggtg |
115 |
Q |
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| T |
1895653 |
gcaacaaagacatggttgttcatcccttgatttgtggctgctttgaacaaagtgagtaaagccatttcaatagtttcctgtcctatgatcactaaaattg |
1895554 |
T |
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| Q |
116 |
gcaaaacatccttgtaaaatgaccatcttcttgtcat |
152 |
Q |
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| T |
1895553 |
gcaaaacatccatgtaaaaggaccatcttcttgtcat |
1895517 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 94; E-Value: 6e-46
Query Start/End: Original strand, 9 - 198
Target Start/End: Complemental strand, 1911116 - 1910928
Alignment:
| Q |
9 |
agcataggcaacaaagacatgattgttcatcccttgaagtgtggctgctttgaacaaagtgagtaaagccatttcaatagtttcctgtcctatgatcacc |
108 |
Q |
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|||||| |||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||| ||| | | ||| ||||| |
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| T |
1911116 |
agcataagcaataaagacatgattgttcatcccttgaagtgtagctgctttgaacaaagtgagtaaagccatgtcaatacattcatagcatataatcaca |
1911017 |
T |
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| Q |
109 |
acaggtggcaaaacatccttgtaaaatgaccatcttcttgtcatattttctctgacttctaagttctatcagttacacaacaatcacaaa |
198 |
Q |
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| T |
1911016 |
gcaggtggcagaacatccatgtacaaggaccatcttcttgtcat-gtttctgtcacttctatgttctttcagttacacaacaatcacaaa |
1910928 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 9 - 217
Target Start/End: Complemental strand, 1884166 - 1883959
Alignment:
| Q |
9 |
agcataggcaacaaagacatgattgttcatcccttgaagtgtggctgctttgaacaaagtgagtaaagccatttcaatagtttcctgtcctatgatcacc |
108 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||| |||| | ||| | ||||| ||||| |
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| T |
1884166 |
agcataggcaacaaagacatgattgttcatcccttgaagtgtagctgctttgaacaaagtcagtaaagccatgtcaacacattcattgcctataatcaca |
1884067 |
T |
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| Q |
109 |
acaggtggcaaaacatccttgtaaaatgaccatcttcttgtcatattttctctgacttctaagttctatcagttacacaacaatcacaaattctgctgaa |
208 |
Q |
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|||||||||| || |||| ||||||| |||| | |||||||||| ||||| || ||||||||| |||| || |||||||||||||| || |||| |
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| T |
1884066 |
acaggtggcagaaaatccatgtaaaaggaccgttttcttgtcat-ctttctatgtgttctaagttttatcctatatacaacaatcacaaaccttgttgaa |
1883968 |
T |
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| Q |
209 |
gttcagaat |
217 |
Q |
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||||||||| |
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| T |
1883967 |
gttcagaat |
1883959 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 9 - 152
Target Start/End: Complemental strand, 1902071 - 1901928
Alignment:
| Q |
9 |
agcataggcaacaaagacatgattgttcatcccttgaagtgtggctgctttgaacaaagtgagtaaagccatttcaatagtttcctgtcctatgatcacc |
108 |
Q |
| |
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|||||| |||| ||||||||| |||||||||||||||||||| | |||||||||||||||||||||||||| ||| | ||| | ||||| |||||| |
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| T |
1902071 |
agcataagcaataaagacatggttgttcatcccttgaagtgttacagctttgaacaaagtgagtaaagccatgtcagaacattcattgcctataatcacc |
1901972 |
T |
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| Q |
109 |
acaggtggcaaaacatccttgtaaaatgaccatcttcttgtcat |
152 |
Q |
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|||||||||||||||||| |||||| |||||||||||||||||| |
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| T |
1901971 |
acaggtggcaaaacatccatgtaaagtgaccatcttcttgtcat |
1901928 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 9 - 79
Target Start/End: Complemental strand, 1878154 - 1878084
Alignment:
| Q |
9 |
agcataggcaacaaagacatgattgttcatcccttgaagtgtggctgctttgaacaaagtgagtaaagcca |
79 |
Q |
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||||||||||||||| |||| |||||||||||||||||||||||||||||| | ||| ||| |||||||| |
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| T |
1878154 |
agcataggcaacaaaaacatagttgttcatcccttgaagtgtggctgctttgtataaaatgactaaagcca |
1878084 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 31 - 80
Target Start/End: Complemental strand, 11537577 - 11537528
Alignment:
| Q |
31 |
ttgttcatcccttgaagtgtggctgctttgaacaaagtgagtaaagccat |
80 |
Q |
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|||||||||||||| |||| |||||||||||||||||||| ||| |||| |
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| T |
11537577 |
ttgttcatcccttgcagtggtgctgctttgaacaaagtgagcaaacccat |
11537528 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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