View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15860_high_2 (Length: 460)
Name: NF15860_high_2
Description: NF15860
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15860_high_2 |
 | |
|
| [»] chr8 (4 HSPs) |
| |
|
Alignment Details
Target: chr8 (Bit Score: 396; Significance: 0; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 396; E-Value: 0
Query Start/End: Original strand, 18 - 460
Target Start/End: Original strand, 455511 - 455962
Alignment:
| Q |
18 |
attgaagggtccaaaactactaaatgcagatcataagatgccttcaaaaacaatgatgaccacaaccttggaaagtgatgagaattggttgattggttgt |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
455511 |
attgaagggtccaaaactactaaatgcagatcataagatgccttcaaaaacaatgatgaccacaaccttggaaagtgatgagaattggttgattggttgt |
455610 |
T |
|
| Q |
118 |
ctctttctgttgggaagtagtgttgccggctcaatttggctaattttgcaggtatttgattgtgacaatataagtatcacttttagtgggtgaggttgag |
217 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
455611 |
ctctttctgttgggaagtagtgttgccggctcaatttggctaattttgcaggtatttgattgtaacaatataagtatcacttttagtgggtgaggttgag |
455710 |
T |
|
| Q |
218 |
gttgagggcctacgtacgatgaaaccatgtgc---------tttattggttaaaaaccaacttcaccatggtaaaaaactttagggttatgcatctctta |
308 |
Q |
| |
|
||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||| || |
|
|
| T |
455711 |
gttgaggacctacgtacgatgaaaccatgtgctttatttgatttattggttaaaaaccaacttcaccatggtaaaaaactttagggttatgcgtctcgta |
455810 |
T |
|
| Q |
309 |
gagcactagttaagaagataaaactcgtcttggtctctcttgtcatgcatatataatatattgcccccgtacattcatttacattgggatcgttggctat |
408 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
455811 |
gagcactagttaagaagataaaactcgtcttggtctctcttatcatgcatatataatatattgcccccgtacattcatttacattgggatcgttggctat |
455910 |
T |
|
| Q |
409 |
catttgtgcatatacgagacgatcaaaaagtttctgcagcaaaacagcatgc |
460 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
455911 |
catttgtgcatatacgagacgatcaaaaaatttctgcagcaaaacagcatgc |
455962 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 19 - 119
Target Start/End: Original strand, 467790 - 467890
Alignment:
| Q |
19 |
ttgaagggtccaaaactactaaatgcagatcataagatgccttcaaaaacaatgatgaccacaaccttg---gaaagtgatgagaattggttgattggtt |
115 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||| | ||||||| |||| ||| |||||||||| | ||||||||||||||||||| |||| | |
|
|
| T |
467790 |
ttgaagggtccaaaactactaaatgcagat---aagatactttcaaaatcaatcatggccacaaccttattaggaagtgatgagaattggttgcttggat |
467886 |
T |
|
| Q |
116 |
gtct |
119 |
Q |
| |
|
|||| |
|
|
| T |
467887 |
gtct |
467890 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 91 - 174
Target Start/End: Original strand, 474896 - 474979
Alignment:
| Q |
91 |
agtgatgagaattggttgattggttgtctctttctgttgggaagtagtgttgccggctcaatttggctaattttgcaggtattt |
174 |
Q |
| |
|
|||||||| | ||||||| |||| ||| | | ||| |||||||||||||||||| | ||| ||||||| ||||||||||||||| |
|
|
| T |
474896 |
agtgatgatagttggttgcttggatgtgtgtatcttttgggaagtagtgttgcctggtcactttggctcattttgcaggtattt |
474979 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 59 - 174
Target Start/End: Original strand, 446817 - 446935
Alignment:
| Q |
59 |
cttcaaaaacaatgatgaccacaaccttggaaagtgatgagaat---tggttgattggttgtctctttctgttgggaagtagtgttgccggctcaatttg |
155 |
Q |
| |
|
|||||||| |||| ||| ||||||||| | |||||||||||| ||||| |||| ||||| |||| |||||||||| ||||| || |||| ||| |
|
|
| T |
446817 |
cttcaaaatcaatcatggccacaacctcgacaagtgatgagaacaactggtttcttggatgtctaattcttttgggaagtactgttggagggtcaacttg |
446916 |
T |
|
| Q |
156 |
gctaattttgcaggtattt |
174 |
Q |
| |
|
||| ||||||||||||||| |
|
|
| T |
446917 |
gctcattttgcaggtattt |
446935 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 78 - 174
Target Start/End: Complemental strand, 27491494 - 27491398
Alignment:
| Q |
78 |
cacaaccttggaaagtgatgagaattggttgattggttgtctctttctgttgggaagtagtgttgccggctcaatttggctaattttgcaggtattt |
174 |
Q |
| |
|
||||||||| | ||||||||||||||||||| |||| ||| | |||| || ||||| |||||||| | ||| ||||||| ||||||||||||||| |
|
|
| T |
27491494 |
cacaaccttaggaagtgatgagaattggttgcttggatgtttggttctttttggaagctgtgttgcctggtcagtttggcttattttgcaggtattt |
27491398 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University