View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15860_high_4 (Length: 359)
Name: NF15860_high_4
Description: NF15860
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15860_high_4 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 307; Significance: 1e-173; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 307; E-Value: 1e-173
Query Start/End: Original strand, 9 - 343
Target Start/End: Complemental strand, 30480814 - 30480475
Alignment:
| Q |
9 |
gagatgaagtgaaaatgatgataaatataatatataccaggaagttgccaaggctcgcaagtatgcaagtcaatttcctccaaggtacccttaagaacat |
108 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30480814 |
gagatgaagtgaaaatgatgataaatataatatataccaggaagttgccaaggctcgcaagtatgcaagtcaatttcctccaaggtacccttaagaacat |
30480715 |
T |
|
| Q |
109 |
cctcattagtgatttttt-gtaaaggtaatgaaggaccaactcttcatcactagggtaaaatcgaaagccagggggaagtgaagcaccgacatctctaag |
207 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30480714 |
cctcattagtgatttttttgtaaaggtaatgaaggaccaactcttcatcactggggtaaaatcgaaagccagggggaagtgaagcaccgacatctctaag |
30480615 |
T |
|
| Q |
208 |
acccatgattaatt----ttgtaagctaggaagagaaagaggaagatatatttttgaaattttggatatatatggtagaggtgtggatatatataaagta |
303 |
Q |
| |
|
|||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30480614 |
acccatgattaattaattttgtaagctagggagagaaagaggaagatatatttttgaaattttggatatatatggtagaggtgtggatatatataaagta |
30480515 |
T |
|
| Q |
304 |
taagaatctatataattgaagctagctttgagtgattgct |
343 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30480514 |
taagaatctatataattgaagctagctttgagtgattgct |
30480475 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 37; Significance: 0.000000000008; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 38 - 217
Target Start/End: Original strand, 39018822 - 39019002
Alignment:
| Q |
38 |
atatataccaggaagttgccaaggctcgcaagtatgcaagtcaatttcctccaaggtacccttaagaacatcctcattagtgat-tttttgtaaaggtaa |
136 |
Q |
| |
|
||||||||| ||||||||||| || || || | || | ||||||||| ||| |||||||||||||| |||||||| ||||| ||||||||||| || |
|
|
| T |
39018822 |
atatatacctggaagttgccatggttcacatatgtgaaggtcaatttcaatcaaagtacccttaagaacttcctcatttgtgatctttttgtaaagatag |
39018921 |
T |
|
| Q |
137 |
tgaaggaccaactcttcatcactagggtaaaatcgaaagccagggggaagtgaagcaccgacatctctaagacccatgatt |
217 |
Q |
| |
|
||| ||||| || |||||||| || ||||| ||||| ||||| || |||||||| || | ||||| | |||||||||| |
|
|
| T |
39018922 |
tgacaaaccaattcctcatcacttggataaaaccgaaatccaggaggtagtgaagctcctatgtctctcaaacccatgatt |
39019002 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University