View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15860_high_9 (Length: 304)
Name: NF15860_high_9
Description: NF15860
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15860_high_9 |
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| [»] scaffold1008 (1 HSPs) |
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| [»] scaffold0874 (1 HSPs) |
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Alignment Details
Target: scaffold1008 (Bit Score: 246; Significance: 1e-136; HSPs: 1)
Name: scaffold1008
Description:
Target: scaffold1008; HSP #1
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 9 - 287
Target Start/End: Complemental strand, 3029 - 2739
Alignment:
| Q |
9 |
tagaaataatattttaataacaggttatgatatgtatattgtaaattcagaaccatttc------------tcatgaaagtgttgtgtttgaaaccaact |
96 |
Q |
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| T |
3029 |
tagaaataatattttaataacaggttatgatatgtatattgtacattcagaaccatttcctaggtgatttctcatgaaagtgttgtgtttgaaaccaact |
2930 |
T |
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| Q |
97 |
gcttttaattttaaaaagtaaccaacgacattaaccaagttatgtttgatcaaattttgtacaatgaatttggtcctggatagtttaagaggtttctaaa |
196 |
Q |
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| T |
2929 |
gcttttaattttaaaaagtaaccaacgacattaaccaagttatgtttgatcaaattttgtacaatgaatttggtcctggatagtttaagaggtttctaaa |
2830 |
T |
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| Q |
197 |
ctacatgaatattgagggattgatattaatctaatcaatgtgaactcataaacaaggtcttcttttgaatctgttttcgagaatagctttt |
287 |
Q |
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| T |
2829 |
ctacatgaatattgagggattgatattaatctaatcaatgtgaactcataaacaaggtcttcttttgaatctgttttcgagaatagctttt |
2739 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0874 (Bit Score: 246; Significance: 1e-136; HSPs: 1)
Name: scaffold0874
Description:
Target: scaffold0874; HSP #1
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 9 - 287
Target Start/End: Original strand, 890 - 1180
Alignment:
| Q |
9 |
tagaaataatattttaataacaggttatgatatgtatattgtaaattcagaaccattt------------ctcatgaaagtgttgtgtttgaaaccaact |
96 |
Q |
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| T |
890 |
tagaaataatattttaataacaggttatgatatgtatattgtacattcagaaccatttcctaggtgatttctcatgaaagtgttgtgtttgaaaccaact |
989 |
T |
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| Q |
97 |
gcttttaattttaaaaagtaaccaacgacattaaccaagttatgtttgatcaaattttgtacaatgaatttggtcctggatagtttaagaggtttctaaa |
196 |
Q |
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| T |
990 |
gcttttaattttaaaaagtaaccaacgacattaaccaagttatgtttgatcaaattttgtacaatgaatttggtcctggatagtttaagaggtttctaaa |
1089 |
T |
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| Q |
197 |
ctacatgaatattgagggattgatattaatctaatcaatgtgaactcataaacaaggtcttcttttgaatctgttttcgagaatagctttt |
287 |
Q |
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| T |
1090 |
ctacatgaatattgagggattgatattaatctaatcaatgtgaactcataaacaaggtcttcttttgaatctgttttcgagaatagctttt |
1180 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 132; Significance: 1e-68; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 12 - 287
Target Start/End: Complemental strand, 2331949 - 2331647
Alignment:
| Q |
12 |
aaataatattttaataacaggttatgatatgtatattgtaaattcagaaccatttctca------------tgaaagtgttgtgtttgaaaccaactgct |
99 |
Q |
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|||||||||||||||||||||||||||||||| ||||||| || || | |||||||| | ||||||||||||||||||||||||||||| |
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| T |
2331949 |
aaataatattttaataacaggttatgatatgtgtattgtatatacaaagccatttcttaggtgatttttcttgaaagtgttgtgtttgaaaccaactgct |
2331850 |
T |
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| Q |
100 |
tttaattttaaaaagtaaccaacgacattaaccaagttatgtttgatcaaattttgtacaatgaatttggtcctggatagtttaagaggtttctaaacta |
199 |
Q |
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|||||||||||||||||||||| |||| |||||||||||||||||||||||| ||||| ||| ||||||||||||||||||||||||||||||| |||| |
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| T |
2331849 |
tttaattttaaaaagtaaccaaggacaataaccaagttatgtttgatcaaatgttgtaaaataaatttggtcctggatagtttaagaggtttctggacta |
2331750 |
T |
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| Q |
200 |
catgaatattgagggattgatatt---------------aatctaatcaatgtgaactcataaacaaggtcttcttttgaatctgttttcgagaatagct |
284 |
Q |
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||| ||||||||| |||||||||| ||||||||||| ||||||| |||||||||| ||||||||||||| ||||||||| |||||| |
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| T |
2331749 |
catcaatattgagagattgatattatatttgcatgctagaatctaatcaaggtgaacttataaacaagggcttcttttgaatcagttttcgagcatagct |
2331650 |
T |
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| Q |
285 |
ttt |
287 |
Q |
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||| |
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| T |
2331649 |
ttt |
2331647 |
T |
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