View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15860_low_13 (Length: 280)
Name: NF15860_low_13
Description: NF15860
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15860_low_13 |
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Alignment Details
Target: chr5 (Bit Score: 251; Significance: 1e-139; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 1 - 262
Target Start/End: Original strand, 3983524 - 3983783
Alignment:
| Q |
1 |
atatcaaaacacaaagacattactgcatttctatgatcccattgtgatcatcgttcctccaaacaagtcagcctccagttctacaagtacagttactgaa |
100 |
Q |
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| T |
3983524 |
atatcaaaacacaaagacattactgcatttctatgatcccattgtgatcatcgttcctccaaacaagtcagcctccagttctacaagtacagttactgaa |
3983623 |
T |
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| Q |
101 |
ttggttgatagattttatggttcagtcaagaaggtaatatgatcatgtctctttgtccttacatccttctaatggttatgtttttcagtgcaaaactgct |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3983624 |
ttggttgatagattttatggttcagtcaagaaggtaatatgatcatgtctctttgtccttacatccttctaatggttatgtttttcagtgcaaaactgct |
3983723 |
T |
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| Q |
201 |
gtgcatgatgtctgtctatgaaatacatttcatttggagttcttttatatgcaggtagtgtt |
262 |
Q |
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|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3983724 |
gtgcatgatgtctg--tatgaaatacatttcatttggagttcttttatatgcaggtagtgtt |
3983783 |
T |
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