View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15860_low_16 (Length: 236)

Name: NF15860_low_16
Description: NF15860
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15860_low_16
NF15860_low_16
[»] chr1 (4 HSPs)
chr1 (1-91)||(37687598-37687688)
chr1 (1-91)||(37697830-37697920)
chr1 (167-224)||(37687432-37687489)
chr1 (167-224)||(37698029-37698086)
[»] chr4 (2 HSPs)
chr4 (167-224)||(55221964-55222021)
chr4 (27-79)||(55221732-55221784)


Alignment Details
Target: chr1 (Bit Score: 87; Significance: 8e-42; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 1 - 91
Target Start/End: Complemental strand, 37687688 - 37687598
Alignment:
Q  1 tcagatccaattatttagcacctctattttacttttgaaatatatactttctaaaaataaattcatacattaattaccatttataagcttg 91  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37687688 tcagatccaattatctagcacctctattttacttttgaaatatatactttctaaaaataaattcatacattaattaccatttataagcttg 37687598  T

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Target: chr1; HSP #2
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 1 - 91
Target Start/End: Original strand, 37697830 - 37697920
Alignment:
Q  1 tcagatccaattatttagcacctctattttacttttgaaatatatactttctaaaaataaattcatacattaattaccatttataagcttg 91  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37697830 tcagatccaattatctagcacctctattttacttttgaaatatatactttctaaaaataaattcatacattaattaccatttataagcttg 37697920  T

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Target: chr1; HSP #3
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 167 - 224
Target Start/End: Complemental strand, 37687489 - 37687432
Alignment:
Q  167 ttaattgcaaaatgaatattgcagtttgaggactatgacaagatgatttaccttgatg 224  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  37687489 ttaattgcaaaatgaatattgcagtttgaggaatatgacaagatgatttaccttgatg 37687432  T

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Target: chr1; HSP #4
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 167 - 224
Target Start/End: Original strand, 37698029 - 37698086
Alignment:
Q  167 ttaattgcaaaatgaatattgcagtttgaggactatgacaagatgatttaccttgatg 224  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  37698029 ttaattgcaaaatgaatattgcagtttgaggaatatgacaagatgatttaccttgatg 37698086  T

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Target: chr4 (Bit Score: 38; Significance: 0.000000000001; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 167 - 224
Target Start/End: Original strand, 55221964 - 55222021
Alignment:
Q  167 ttaattgcaaaatgaatattgcagtttgaggactatgacaagatgatttaccttgatg 224  Q
    ||||||| ||||| ||| |||||||||||||| ||||| |||||||||||||||||||    
T  55221964 ttaattgtaaaattaatgttgcagtttgaggaatatgagaagatgatttaccttgatg 55222021  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 27 - 79
Target Start/End: Original strand, 55221732 - 55221784
Alignment:
Q  27 ttttacttttgaaatatatactttctaaaaataaattcatacattaattacca 79  Q
    |||| ||||| |||||||||||||||| ||||| || | ||||||||||||||    
T  55221732 tttttcttttcaaatatatactttctataaatagatccttacattaattacca 55221784  T

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