View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15860_low_18 (Length: 234)
Name: NF15860_low_18
Description: NF15860
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15860_low_18 |
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Alignment Details
Target: chr7 (Bit Score: 182; Significance: 2e-98; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 23 - 224
Target Start/End: Original strand, 31797253 - 31797454
Alignment:
| Q |
23 |
tttgggttcaccgtctctttttacataagacatacaagtagttttgacatatcctttgaaatattctgggcatgctaatcatgtatccatggtagaagat |
122 |
Q |
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| T |
31797253 |
tttgggttcaccgtctctttttacataagacgtacaagtagttttgacaactcctttgaaatattctgagcatgctaatcatgtatccatggtagaagat |
31797352 |
T |
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| Q |
123 |
gcagaatcctctagaattttacgagttagtagtcattactcttgatgattatctacctagttttggccttgtatgagcaataatgcagtattctgatgat |
222 |
Q |
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| T |
31797353 |
gcagaatcctctagacttttacgagttagtagtcattactcttgatgattatctacctagttttggccttgtatgagcaataatgcagtattctgatgat |
31797452 |
T |
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| Q |
223 |
gt |
224 |
Q |
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|| |
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| T |
31797453 |
gt |
31797454 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 25 - 128
Target Start/End: Original strand, 31791112 - 31791214
Alignment:
| Q |
25 |
tgggttcaccgtctctttttacataagacatacaagtagttttgacatatcctttgaaatattctgggcatgctaatcatgtatccatggtagaagatgc |
124 |
Q |
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| T |
31791112 |
tgggttcacagactctttttacatt-gaggtacaagtagttttgacatatcctttgaaatattctgggcatgctaatcatgcatctatggtagaagatgc |
31791210 |
T |
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| Q |
125 |
agaa |
128 |
Q |
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|||| |
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| T |
31791211 |
agaa |
31791214 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 174 - 224
Target Start/End: Original strand, 31786007 - 31786057
Alignment:
| Q |
174 |
tctacctagttttggccttgtatgagcaataatgcagtattctgatgatgt |
224 |
Q |
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| T |
31786007 |
tctacctagttttggccttgtatgagcaataatgcagtattctgatgatgt |
31786057 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 58 - 127
Target Start/End: Original strand, 31799810 - 31799879
Alignment:
| Q |
58 |
aagtagttttgacatatcctttgaaatattctgggcatgctaatcatgtatccatggtagaagatgcaga |
127 |
Q |
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|||||||||||||||||||||| ||||| | |||||||| |||| ||||||| || ||||||||||||| |
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| T |
31799810 |
aagtagttttgacatatcctttaaaatactatgggcatgttaattatgtatctgtgttagaagatgcaga |
31799879 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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