View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15860_low_3 (Length: 438)
Name: NF15860_low_3
Description: NF15860
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15860_low_3 |
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Alignment Details
Target: chr7 (Bit Score: 206; Significance: 1e-112; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 206; E-Value: 1e-112
Query Start/End: Original strand, 1 - 210
Target Start/End: Complemental strand, 31797831 - 31797622
Alignment:
| Q |
1 |
aatgccactagaataaataagatcagaaatttcaattatatgcacgaagatatgttttctcataagaactttggagttgaaacagattatacttgttgca |
100 |
Q |
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| T |
31797831 |
aatgccactagaataaataagatcagaaatttcaattatatgcacgaagatatgttttctcataagaactttggagttgaaacagattatacttgttgca |
31797732 |
T |
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| Q |
101 |
cacaaactttgtataatgatgctagtagttggtgtacaacgagcagtgccatttttcatgaccataagtattcactatatcatccaatatgtaaaattga |
200 |
Q |
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| T |
31797731 |
cacaaactttgtataatgatgctagtagttggtgtacaacgagcagtgccatttttcatgaccataagtattcactaaatcatccaatatgtaaaattga |
31797632 |
T |
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| Q |
201 |
gcttatgaaa |
210 |
Q |
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|||||||||| |
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| T |
31797631 |
gcttatgaaa |
31797622 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 19 - 89
Target Start/End: Complemental strand, 31787378 - 31787308
Alignment:
| Q |
19 |
aagatcagaaatttcaattatatgcacgaagatatgttttctcataagaactttggagttgaaacagatta |
89 |
Q |
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| T |
31787378 |
aagatcggacatttcaattatatgcacgaagatatgatttctcacaagaactttggagttgaaagagatta |
31787308 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 352 - 425
Target Start/End: Complemental strand, 31786924 - 31786854
Alignment:
| Q |
352 |
gccttgcaccgcactcatacctttaagcccattttgaaaaggtacattataaatttcgttcagctaatttcaag |
425 |
Q |
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| T |
31786924 |
gccttgcactgcactcctacctttaagctcatcttgaaaaggtacat---aacttgggttcagctaatttcaag |
31786854 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 161 - 208
Target Start/End: Complemental strand, 31787210 - 31787163
Alignment:
| Q |
161 |
accataagtattcactatatcatccaatatgtaaaattgagcttatga |
208 |
Q |
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|||||||||||||||||||||||| |||| |||||||| | ||||||| |
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| T |
31787210 |
accataagtattcactatatcatcaaataggtaaaatttatcttatga |
31787163 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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