View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15860_low_4 (Length: 374)
Name: NF15860_low_4
Description: NF15860
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15860_low_4 |
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| [»] scaffold0874 (1 HSPs) |
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| [»] scaffold1008 (1 HSPs) |
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Alignment Details
Target: scaffold0874 (Bit Score: 352; Significance: 0; HSPs: 1)
Name: scaffold0874
Description:
Target: scaffold0874; HSP #1
Raw Score: 352; E-Value: 0
Query Start/End: Original strand, 15 - 374
Target Start/End: Original strand, 462 - 821
Alignment:
| Q |
15 |
cacagagagggagtaattccattgcaggcaggagatatggaaagtatactcagaggagttcaaacaatgtttcacgaagggttagagatgcagattctga |
114 |
Q |
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| T |
462 |
cacaaagagggagtaattccattgcaggcaggagatatggaaaatatactcagaggagttcaaacaatgtttcacgaagggttagagatgcagattctga |
561 |
T |
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| Q |
115 |
agtttatgatatgggtttacaacaagatggaagttatcaattcttacagaatgagcaacctgactctacaagctggtaaaactgtggactcttagtcaag |
214 |
Q |
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| T |
562 |
agtttatgatatgggtttacaacaagatggaagttatcaattcttacagaatgagcaacctgactctacaagctggtaaaactgtggactcttagtcaag |
661 |
T |
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| Q |
215 |
ggttattctttgatattggtaaaagtttgtttgagaaaaatgattgatgctttgttactctttcgtaggcattgtaaaagtatattttgtatataataca |
314 |
Q |
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| T |
662 |
ggttattctttgatattggtaaaagtttgtttgagaaaaatgattgatgctttgttactctttcgtaggcattgtaaaagtatattttgtatataataca |
761 |
T |
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| Q |
315 |
tttcatctttaatgaaaatgttgaatatcaagttaaagtcttttttattctttaaaaact |
374 |
Q |
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| T |
762 |
tttcatctttaatgaaaatgttgaatatcaagttaaagtcttttttattctttaaaaact |
821 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1008 (Bit Score: 351; Significance: 0; HSPs: 1)
Name: scaffold1008
Description:
Target: scaffold1008; HSP #1
Raw Score: 351; E-Value: 0
Query Start/End: Original strand, 20 - 374
Target Start/End: Complemental strand, 3452 - 3098
Alignment:
| Q |
20 |
agagggagtaattccattgcaggcaggagatatggaaagtatactcagaggagttcaaacaatgtttcacgaagggttagagatgcagattctgaagttt |
119 |
Q |
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| T |
3452 |
agagggagtaattccattgcaggcaggagatatggaaaatatactcagaggagttcaaacaatgtttcacgaagggttagagatgcagattctgaagttt |
3353 |
T |
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| Q |
120 |
atgatatgggtttacaacaagatggaagttatcaattcttacagaatgagcaacctgactctacaagctggtaaaactgtggactcttagtcaagggtta |
219 |
Q |
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| T |
3352 |
atgatatgggtttacaacaagatggaagttatcaattcttacagaatgagcaacctgactctacaagctggtaaaactgtggactcttagtcaagggtta |
3253 |
T |
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| Q |
220 |
ttctttgatattggtaaaagtttgtttgagaaaaatgattgatgctttgttactctttcgtaggcattgtaaaagtatattttgtatataatacatttca |
319 |
Q |
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| T |
3252 |
ttctttgatattggtaaaagtttgtttgagaaaaatgattgatgctttgttactctttcgtaggcattgtaaaagtatattttgtatataatacatttca |
3153 |
T |
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| Q |
320 |
tctttaatgaaaatgttgaatatcaagttaaagtcttttttattctttaaaaact |
374 |
Q |
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| T |
3152 |
tctttaatgaaaatgttgaatatcaagttaaagtcttttttattctttaaaaact |
3098 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 313; Significance: 1e-176; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 313; E-Value: 1e-176
Query Start/End: Original strand, 15 - 371
Target Start/End: Complemental strand, 2332380 - 2332024
Alignment:
| Q |
15 |
cacagagagggagtaattccattgcaggcaggagatatggaaagtatactcagaggagttcaaacaatgtttcacgaagggttagagatgcagattctga |
114 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2332380 |
cacatagagggagtaattccattgcaggcaggagatatggaaaatatactcagaggagttcaaacaatgtttcacgaagggttagagatgcagattctga |
2332281 |
T |
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| Q |
115 |
agtttatgatatgggtttacaacaagatggaagttatcaattcttacagaatgagcaacctgactctacaagctggtaaaactgtggactcttagtcaag |
214 |
Q |
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| T |
2332280 |
agtttatgatatgggtttacaacaagatggaagttatcaattcttacagaatgagcaacctgactctacaagctggtaaaactgtggactcttagtcaag |
2332181 |
T |
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| Q |
215 |
ggttattctttgatattggtaaaagtttgtttgagaaaaatgattgatgctttgttactctttcgtaggcattgtaaaagtatattttgtatataataca |
314 |
Q |
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||||||||||||||||||||||| ||||| |||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
2332180 |
ggttattctttgatattggtaaatgtttgcttgagaaaaatgattgatgctttgttcctctttcgtaggcattgcaaaagtatattttgtatataataca |
2332081 |
T |
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| Q |
315 |
tttcatctttaatgaaaatgttgaatatcaagttaaagtcttttttattctttaaaa |
371 |
Q |
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| T |
2332080 |
ttttatctttaatgagaacgttgaatatcaagtcaaagtcttttttattttttaaaa |
2332024 |
T |
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