View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15860_low_6 (Length: 317)

Name: NF15860_low_6
Description: NF15860
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15860_low_6
NF15860_low_6
[»] chr2 (5 HSPs)
chr2 (17-260)||(34327456-34327699)
chr2 (257-292)||(31368459-31368494)
chr2 (257-292)||(38977779-38977814)
chr2 (259-292)||(36555158-36555191)
chr2 (260-292)||(20283905-20283937)
[»] chr4 (32 HSPs)
chr4 (257-291)||(18733422-18733456)
chr4 (259-291)||(45287416-45287448)
chr4 (257-292)||(3005938-3005973)
chr4 (257-292)||(8085656-8085691)
chr4 (257-292)||(8085880-8085915)
chr4 (257-292)||(8087265-8087300)
chr4 (257-292)||(19511854-19511889)
chr4 (257-292)||(22452605-22452640)
chr4 (257-292)||(22458528-22458563)
chr4 (257-292)||(22459235-22459270)
chr4 (257-292)||(31990309-31990344)
chr4 (257-292)||(36970355-36970390)
chr4 (257-292)||(56206003-56206038)
chr4 (257-292)||(56207887-56207922)
chr4 (257-291)||(19510086-19510120)
chr4 (257-291)||(19510308-19510342)
chr4 (257-291)||(19510788-19510822)
chr4 (257-291)||(19511222-19511256)
chr4 (257-291)||(40631381-40631415)
chr4 (257-291)||(44234140-44234174)
chr4 (257-291)||(44234362-44234396)
chr4 (262-292)||(45287266-45287296)
chr4 (257-290)||(12686745-12686778)
chr4 (257-290)||(12686911-12686944)
chr4 (257-290)||(18690502-18690535)
chr4 (257-290)||(19510489-19510522)
chr4 (257-290)||(22459629-22459662)
chr4 (257-290)||(50946734-50946767)
chr4 (260-292)||(7314586-7314618)
chr4 (259-291)||(18665006-18665038)
chr4 (255-291)||(36970533-36970569)
chr4 (257-289)||(50946674-50946706)
[»] chr3 (21 HSPs)
chr3 (259-291)||(55347881-55347913)
chr3 (257-292)||(7049557-7049592)
chr3 (257-292)||(13276571-13276606)
chr3 (257-292)||(13278025-13278060)
chr3 (257-292)||(13278491-13278526)
chr3 (257-292)||(13280077-13280112)
chr3 (257-292)||(13281478-13281513)
chr3 (257-292)||(13281598-13281633)
chr3 (257-292)||(13281718-13281753)
chr3 (257-292)||(29452276-29452311)
chr3 (257-292)||(31166392-31166427)
chr3 (257-292)||(41719284-41719319)
chr3 (257-292)||(41719404-41719439)
chr3 (257-292)||(52787307-52787342)
chr3 (257-292)||(53252506-53252541)
chr3 (257-291)||(4606169-4606203)
chr3 (257-291)||(7049437-7049471)
chr3 (257-291)||(41285239-41285273)
chr3 (257-291)||(49849525-49849559)
chr3 (257-291)||(52793571-52793605)
chr3 (259-292)||(41719226-41719259)
[»] chr1 (15 HSPs)
chr1 (257-293)||(45311799-45311835)
chr1 (257-292)||(7879151-7879186)
chr1 (257-292)||(7879571-7879606)
chr1 (257-292)||(14753863-14753898)
chr1 (257-292)||(27274281-27274316)
chr1 (257-292)||(45311980-45312015)
chr1 (257-292)||(48188090-48188125)
chr1 (257-291)||(14753248-14753282)
chr1 (257-291)||(14753367-14753401)
chr1 (257-291)||(20360946-20360980)
chr1 (257-291)||(20549990-20550024)
chr1 (257-291)||(28728307-28728341)
chr1 (257-290)||(7879331-7879364)
chr1 (257-290)||(20361292-20361325)
chr1 (257-290)||(20549585-20549618)
[»] scaffold0136 (1 HSPs)
scaffold0136 (257-292)||(11850-11885)
[»] scaffold0087 (3 HSPs)
scaffold0087 (257-292)||(9013-9048)
scaffold0087 (257-292)||(9359-9394)
scaffold0087 (257-291)||(9300-9334)
[»] scaffold0063 (2 HSPs)
scaffold0063 (257-292)||(2317-2352)
scaffold0063 (257-292)||(2497-2532)
[»] chr8 (7 HSPs)
chr8 (257-292)||(23675104-23675139)
chr8 (257-292)||(43204963-43204998)
chr8 (257-292)||(43205221-43205256)
chr8 (257-291)||(34323759-34323793)
chr8 (257-291)||(42576713-42576747)
chr8 (257-289)||(19383213-19383245)
chr8 (256-292)||(40673697-40673733)
[»] chr7 (9 HSPs)
chr7 (257-292)||(2130768-2130803)
chr7 (257-292)||(2131233-2131268)
chr7 (257-292)||(2133181-2133216)
chr7 (257-292)||(9195151-9195186)
chr7 (257-292)||(20538714-20538749)
chr7 (257-292)||(27748259-27748294)
chr7 (257-292)||(27748478-27748513)
chr7 (257-291)||(11562732-11562766)
chr7 (257-290)||(27748141-27748174)
[»] chr6 (5 HSPs)
chr6 (257-292)||(5402143-5402178)
chr6 (257-292)||(5402427-5402462)
chr6 (257-292)||(5402711-5402746)
chr6 (257-292)||(28509109-28509144)
chr6 (257-292)||(29730961-29730996)
[»] chr5 (13 HSPs)
chr5 (257-292)||(6617281-6617316)
chr5 (257-292)||(6617567-6617602)
chr5 (257-292)||(6619028-6619063)
chr5 (257-292)||(6619389-6619424)
chr5 (257-292)||(6619610-6619645)
chr5 (257-292)||(6619832-6619867)
chr5 (257-292)||(10377662-10377697)
chr5 (257-292)||(21572730-21572765)
chr5 (257-292)||(24075717-24075752)
chr5 (257-292)||(24076953-24076988)
chr5 (257-292)||(42379849-42379884)
chr5 (257-291)||(42380500-42380534)
chr5 (257-289)||(23101416-23101448)


Alignment Details
Target: chr2 (Bit Score: 204; Significance: 1e-111; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 17 - 260
Target Start/End: Complemental strand, 34327699 - 34327456
Alignment:
Q  17 caaacacttcactctacattccttcaaaccaattgtctcatccaaccaactatctgtggtgtcaggccctttcataccactcaatttcacaaatccatcc 116  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  34327699 caaacacttcactctacattccttcaaaccaattgtctcatccaaccaactatctgtggtgtcaggtcctttcataccactcaatttcacaaatccatcc 34327600  T
Q  117 ttgcttttttccttgcaacgcaatgccttatttcgattgcatccattagaccaatccatggaataccacacttgaggcaacttaggtttaaaaccttcca 216  Q
    ||||||||||||| ||||||||||||||||||||||  ||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||    
T  34327599 ttgcttttttcctcgcaacgcaatgccttatttcgaacgcatccattagaccaatccatggaataccacgcttgaggcgacttaggtttaaaaccttcca 34327500  T
Q  217 tacattgacacacaggtgaatcttaaaccgacccatagactaag 260  Q
    ||||||||||||||||||||||| |||| | ||| |||||||||    
T  34327499 tacattgacacacaggtgaatctgaaactggcccgtagactaag 34327456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 257 - 292
Target Start/End: Original strand, 31368459 - 31368494
Alignment:
Q  257 taagctgttttgcataagctgtttttgaaaaagaga 292  Q
    |||||||||||| |||||||||||||||||||||||    
T  31368459 taagctgttttgaataagctgtttttgaaaaagaga 31368494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 257 - 292
Target Start/End: Original strand, 38977779 - 38977814
Alignment:
Q  257 taagctgttttgcataagctgtttttgaaaaagaga 292  Q
    |||||||||||| |||||||||||||||||||||||    
T  38977779 taagctgttttgaataagctgtttttgaaaaagaga 38977814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 259 - 292
Target Start/End: Complemental strand, 36555191 - 36555158
Alignment:
Q  259 agctgttttgcataagctgtttttgaaaaagaga 292  Q
    |||||||||| |||||||||||||||||||||||    
T  36555191 agctgttttgaataagctgtttttgaaaaagaga 36555158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 260 - 292
Target Start/End: Complemental strand, 20283937 - 20283905
Alignment:
Q  260 gctgttttgcataagctgtttttgaaaaagaga 292  Q
    ||||||||| |||||||||||||||||||||||    
T  20283937 gctgttttgaataagctgtttttgaaaaagaga 20283905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 35; Significance: 0.0000000001; HSPs: 32)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 257 - 291
Target Start/End: Original strand, 18733422 - 18733456
Alignment:
Q  257 taagctgttttgcataagctgtttttgaaaaagag 291  Q
    |||||||||||||||||||||||||||||||||||    
T  18733422 taagctgttttgcataagctgtttttgaaaaagag 18733456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 259 - 291
Target Start/End: Complemental strand, 45287448 - 45287416
Alignment:
Q  259 agctgttttgcataagctgtttttgaaaaagag 291  Q
    |||||||||||||||||||||||||||||||||    
T  45287448 agctgttttgcataagctgtttttgaaaaagag 45287416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 257 - 292
Target Start/End: Original strand, 3005938 - 3005973
Alignment:
Q  257 taagctgttttgcataagctgtttttgaaaaagaga 292  Q
    |||||||||||| |||||||||||||||||||||||    
T  3005938 taagctgttttgaataagctgtttttgaaaaagaga 3005973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 257 - 292
Target Start/End: Complemental strand, 8085691 - 8085656
Alignment:
Q  257 taagctgttttgcataagctgtttttgaaaaagaga 292  Q
    |||||||||||| |||||||||||||||||||||||    
T  8085691 taagctgttttgaataagctgtttttgaaaaagaga 8085656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 257 - 292
Target Start/End: Complemental strand, 8085915 - 8085880
Alignment:
Q  257 taagctgttttgcataagctgtttttgaaaaagaga 292  Q
    |||||||||||| |||||||||||||||||||||||    
T  8085915 taagctgttttgaataagctgtttttgaaaaagaga 8085880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 257 - 292
Target Start/End: Original strand, 8087265 - 8087300
Alignment:
Q  257 taagctgttttgcataagctgtttttgaaaaagaga 292  Q
    |||||||||||| |||||||||||||||||||||||    
T  8087265 taagctgttttgaataagctgtttttgaaaaagaga 8087300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 257 - 292
Target Start/End: Original strand, 19511854 - 19511889
Alignment:
Q  257 taagctgttttgcataagctgtttttgaaaaagaga 292  Q
    |||||||||||| |||||||||||||||||||||||    
T  19511854 taagctgttttgaataagctgtttttgaaaaagaga 19511889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 257 - 292
Target Start/End: Original strand, 22452605 - 22452640
Alignment:
Q  257 taagctgttttgcataagctgtttttgaaaaagaga 292  Q
    |||||||||||| |||||||||||||||||||||||    
T  22452605 taagctgttttgaataagctgtttttgaaaaagaga 22452640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 257 - 292
Target Start/End: Complemental strand, 22458563 - 22458528
Alignment:
Q  257 taagctgttttgcataagctgtttttgaaaaagaga 292  Q
    |||||||||||| |||||||||||||||||||||||    
T  22458563 taagctgttttgaataagctgtttttgaaaaagaga 22458528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 257 - 292
Target Start/End: Original strand, 22459235 - 22459270
Alignment:
Q  257 taagctgttttgcataagctgtttttgaaaaagaga 292  Q
    |||||||||||| |||||||||||||||||||||||    
T  22459235 taagctgttttgaataagctgtttttgaaaaagaga 22459270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 257 - 292
Target Start/End: Original strand, 31990309 - 31990344
Alignment:
Q  257 taagctgttttgcataagctgtttttgaaaaagaga 292  Q
    |||||||||||| |||||||||||||||||||||||    
T  31990309 taagctgttttgaataagctgtttttgaaaaagaga 31990344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 257 - 292
Target Start/End: Original strand, 36970355 - 36970390
Alignment:
Q  257 taagctgttttgcataagctgtttttgaaaaagaga 292  Q
    |||||||||||| |||||||||||||||||||||||    
T  36970355 taagctgttttgaataagctgtttttgaaaaagaga 36970390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 257 - 292
Target Start/End: Complemental strand, 56206038 - 56206003
Alignment:
Q  257 taagctgttttgcataagctgtttttgaaaaagaga 292  Q
    |||||||||||| |||||||||||||||||||||||    
T  56206038 taagctgttttgaataagctgtttttgaaaaagaga 56206003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 257 - 292
Target Start/End: Original strand, 56207887 - 56207922
Alignment:
Q  257 taagctgttttgcataagctgtttttgaaaaagaga 292  Q
    |||||||||||| |||||||||||||||||||||||    
T  56207887 taagctgttttgaataagctgtttttgaaaaagaga 56207922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 257 - 291
Target Start/End: Complemental strand, 19510120 - 19510086
Alignment:
Q  257 taagctgttttgcataagctgtttttgaaaaagag 291  Q
    |||||||||||| ||||||||||||||||||||||    
T  19510120 taagctgttttgaataagctgtttttgaaaaagag 19510086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 257 - 291
Target Start/End: Complemental strand, 19510342 - 19510308
Alignment:
Q  257 taagctgttttgcataagctgtttttgaaaaagag 291  Q
    |||||||||||| ||||||||||||||||||||||    
T  19510342 taagctgttttgaataagctgtttttgaaaaagag 19510308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 257 - 291
Target Start/End: Complemental strand, 19510822 - 19510788
Alignment:
Q  257 taagctgttttgcataagctgtttttgaaaaagag 291  Q
    |||||||||||| ||||||||||||||||||||||    
T  19510822 taagctgttttgaataagctgtttttgaaaaagag 19510788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 257 - 291
Target Start/End: Original strand, 19511222 - 19511256
Alignment:
Q  257 taagctgttttgcataagctgtttttgaaaaagag 291  Q
    |||||||||||| ||||||||||||||||||||||    
T  19511222 taagctgttttgaataagctgtttttgaaaaagag 19511256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 257 - 291
Target Start/End: Original strand, 40631381 - 40631415
Alignment:
Q  257 taagctgttttgcataagctgtttttgaaaaagag 291  Q
    |||||||||||| ||||||||||||||||||||||    
T  40631381 taagctgttttgaataagctgtttttgaaaaagag 40631415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 257 - 291
Target Start/End: Complemental strand, 44234174 - 44234140
Alignment:
Q  257 taagctgttttgcataagctgtttttgaaaaagag 291  Q
    |||||||||||| ||||||||||||||||||||||    
T  44234174 taagctgttttgaataagctgtttttgaaaaagag 44234140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 257 - 291
Target Start/End: Original strand, 44234362 - 44234396
Alignment:
Q  257 taagctgttttgcataagctgtttttgaaaaagag 291  Q
    |||||||||||| ||||||||||||||||||||||    
T  44234362 taagctgttttgaataagctgtttttgaaaaagag 44234396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 262 - 292
Target Start/End: Complemental strand, 45287296 - 45287266
Alignment:
Q  262 tgttttgcataagctgtttttgaaaaagaga 292  Q
    |||||||||||||||||||||||||||||||    
T  45287296 tgttttgcataagctgtttttgaaaaagaga 45287266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 257 - 290
Target Start/End: Original strand, 12686745 - 12686778
Alignment:
Q  257 taagctgttttgcataagctgtttttgaaaaaga 290  Q
    |||||||||||| |||||||||||||||||||||    
T  12686745 taagctgttttgaataagctgtttttgaaaaaga 12686778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 257 - 290
Target Start/End: Original strand, 12686911 - 12686944
Alignment:
Q  257 taagctgttttgcataagctgtttttgaaaaaga 290  Q
    |||||||||||| |||||||||||||||||||||    
T  12686911 taagctgttttgaataagctgtttttgaaaaaga 12686944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 257 - 290
Target Start/End: Complemental strand, 18690535 - 18690502
Alignment:
Q  257 taagctgttttgcataagctgtttttgaaaaaga 290  Q
    |||||||||||| |||||||||||||||||||||    
T  18690535 taagctgttttgaataagctgtttttgaaaaaga 18690502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 257 - 290
Target Start/End: Complemental strand, 19510522 - 19510489
Alignment:
Q  257 taagctgttttgcataagctgtttttgaaaaaga 290  Q
    |||||||||||| |||||||||||||||||||||    
T  19510522 taagctgttttgaataagctgtttttgaaaaaga 19510489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 257 - 290
Target Start/End: Original strand, 22459629 - 22459662
Alignment:
Q  257 taagctgttttgcataagctgtttttgaaaaaga 290  Q
    |||||||||||| |||||||||||||||||||||    
T  22459629 taagctgttttgaataagctgtttttgaaaaaga 22459662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 257 - 290
Target Start/End: Complemental strand, 50946767 - 50946734
Alignment:
Q  257 taagctgttttgcataagctgtttttgaaaaaga 290  Q
    |||||| |||||||||||||||||||||||||||    
T  50946767 taagctattttgcataagctgtttttgaaaaaga 50946734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 260 - 292
Target Start/End: Original strand, 7314586 - 7314618
Alignment:
Q  260 gctgttttgcataagctgtttttgaaaaagaga 292  Q
    ||||||||| |||||||||||||||||||||||    
T  7314586 gctgttttgaataagctgtttttgaaaaagaga 7314618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 259 - 291
Target Start/End: Original strand, 18665006 - 18665038
Alignment:
Q  259 agctgttttgcataagctgtttttgaaaaagag 291  Q
    ||||||||||||||||||||||| |||||||||    
T  18665006 agctgttttgcataagctgttttagaaaaagag 18665038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 255 - 291
Target Start/End: Original strand, 36970533 - 36970569
Alignment:
Q  255 actaagctgttttgcataagctgtttttgaaaaagag 291  Q
    |||||||||||||| ||||||| ||||||||||||||    
T  36970533 actaagctgttttgaataagctatttttgaaaaagag 36970569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 257 - 289
Target Start/End: Complemental strand, 50946706 - 50946674
Alignment:
Q  257 taagctgttttgcataagctgtttttgaaaaag 289  Q
    |||||||||||| ||||||||||||||||||||    
T  50946706 taagctgttttgaataagctgtttttgaaaaag 50946674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 33; Significance: 0.000000002; HSPs: 21)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 259 - 291
Target Start/End: Complemental strand, 55347913 - 55347881
Alignment:
Q  259 agctgttttgcataagctgtttttgaaaaagag 291  Q
    |||||||||||||||||||||||||||||||||    
T  55347913 agctgttttgcataagctgtttttgaaaaagag 55347881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 257 - 292
Target Start/End: Original strand, 7049557 - 7049592
Alignment:
Q  257 taagctgttttgcataagctgtttttgaaaaagaga 292  Q
    |||||||||||| |||||||||||||||||||||||    
T  7049557 taagctgttttgaataagctgtttttgaaaaagaga 7049592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 257 - 292
Target Start/End: Complemental strand, 13276606 - 13276571
Alignment:
Q  257 taagctgttttgcataagctgtttttgaaaaagaga 292  Q
    |||||||||||| |||||||||||||||||||||||    
T  13276606 taagctgttttgaataagctgtttttgaaaaagaga 13276571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 257 - 292
Target Start/End: Original strand, 13278025 - 13278060
Alignment:
Q  257 taagctgttttgcataagctgtttttgaaaaagaga 292  Q
    |||||||||||| |||||||||||||||||||||||    
T  13278025 taagctgttttgaataagctgtttttgaaaaagaga 13278060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 257 - 292
Target Start/End: Original strand, 13278491 - 13278526
Alignment:
Q  257 taagctgttttgcataagctgtttttgaaaaagaga 292  Q
    |||||||||||| |||||||||||||||||||||||    
T  13278491 taagctgttttgaataagctgtttttgaaaaagaga 13278526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 257 - 292
Target Start/End: Complemental strand, 13280112 - 13280077
Alignment:
Q  257 taagctgttttgcataagctgtttttgaaaaagaga 292  Q
    |||||||||||| |||||||||||||||||||||||    
T  13280112 taagctgttttgaataagctgtttttgaaaaagaga 13280077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 257 - 292
Target Start/End: Original strand, 13281478 - 13281513
Alignment:
Q  257 taagctgttttgcataagctgtttttgaaaaagaga 292  Q
    |||||||||||| |||||||||||||||||||||||    
T  13281478 taagctgttttgaataagctgtttttgaaaaagaga 13281513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 257 - 292
Target Start/End: Original strand, 13281598 - 13281633
Alignment:
Q  257 taagctgttttgcataagctgtttttgaaaaagaga 292  Q
    |||||||||||| |||||||||||||||||||||||    
T  13281598 taagctgttttgaataagctgtttttgaaaaagaga 13281633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 257 - 292
Target Start/End: Original strand, 13281718 - 13281753
Alignment:
Q  257 taagctgttttgcataagctgtttttgaaaaagaga 292  Q
    |||||||||||| |||||||||||||||||||||||    
T  13281718 taagctgttttgaataagctgtttttgaaaaagaga 13281753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 257 - 292
Target Start/End: Complemental strand, 29452311 - 29452276
Alignment:
Q  257 taagctgttttgcataagctgtttttgaaaaagaga 292  Q
    |||||||||||| |||||||||||||||||||||||    
T  29452311 taagctgttttgaataagctgtttttgaaaaagaga 29452276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 257 - 292
Target Start/End: Original strand, 31166392 - 31166427
Alignment:
Q  257 taagctgttttgcataagctgtttttgaaaaagaga 292  Q
    |||||||||||| |||||||||||||||||||||||    
T  31166392 taagctgttttgaataagctgtttttgaaaaagaga 31166427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 257 - 292
Target Start/End: Original strand, 41719284 - 41719319
Alignment:
Q  257 taagctgttttgcataagctgtttttgaaaaagaga 292  Q
    |||||||||||| |||||||||||||||||||||||    
T  41719284 taagctgttttgaataagctgtttttgaaaaagaga 41719319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 257 - 292
Target Start/End: Original strand, 41719404 - 41719439
Alignment:
Q  257 taagctgttttgcataagctgtttttgaaaaagaga 292  Q
    |||||||||||| |||||||||||||||||||||||    
T  41719404 taagctgttttgaataagctgtttttgaaaaagaga 41719439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 257 - 292
Target Start/End: Original strand, 52787307 - 52787342
Alignment:
Q  257 taagctgttttgcataagctgtttttgaaaaagaga 292  Q
    |||||||||||| |||||||||||||||||||||||    
T  52787307 taagctgttttgaataagctgtttttgaaaaagaga 52787342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 257 - 292
Target Start/End: Complemental strand, 53252541 - 53252506
Alignment:
Q  257 taagctgttttgcataagctgtttttgaaaaagaga 292  Q
    |||| |||||||||||||||||||||||||||||||    
T  53252541 taagttgttttgcataagctgtttttgaaaaagaga 53252506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 257 - 291
Target Start/End: Original strand, 4606169 - 4606203
Alignment:
Q  257 taagctgttttgcataagctgtttttgaaaaagag 291  Q
    |||||||||||| ||||||||||||||||||||||    
T  4606169 taagctgttttgaataagctgtttttgaaaaagag 4606203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 257 - 291
Target Start/End: Original strand, 7049437 - 7049471
Alignment:
Q  257 taagctgttttgcataagctgtttttgaaaaagag 291  Q
    |||||||||||| ||||||||||||||||||||||    
T  7049437 taagctgttttgaataagctgtttttgaaaaagag 7049471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 257 - 291
Target Start/End: Complemental strand, 41285273 - 41285239
Alignment:
Q  257 taagctgttttgcataagctgtttttgaaaaagag 291  Q
    |||||||||||| ||||||||||||||||||||||    
T  41285273 taagctgttttgaataagctgtttttgaaaaagag 41285239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 257 - 291
Target Start/End: Original strand, 49849525 - 49849559
Alignment:
Q  257 taagctgttttgcataagctgtttttgaaaaagag 291  Q
    |||||||||||| ||||||||||||||||||||||    
T  49849525 taagctgttttgaataagctgtttttgaaaaagag 49849559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 257 - 291
Target Start/End: Original strand, 52793571 - 52793605
Alignment:
Q  257 taagctgttttgcataagctgtttttgaaaaagag 291  Q
    |||||||||||| ||||||||||||||||||||||    
T  52793571 taagctgttttgaataagctgtttttgaaaaagag 52793605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 259 - 292
Target Start/End: Original strand, 41719226 - 41719259
Alignment:
Q  259 agctgttttgcataagctgtttttgaaaaagaga 292  Q
    |||||||||| |||||||||||||||||||||||    
T  41719226 agctgttttgaataagctgtttttgaaaaagaga 41719259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 33; Significance: 0.000000002; HSPs: 15)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 257 - 293
Target Start/End: Complemental strand, 45311835 - 45311799
Alignment:
Q  257 taagctgttttgcataagctgtttttgaaaaagagaa 293  Q
    |||||||||||| ||||||||||||||||||||||||    
T  45311835 taagctgttttgaataagctgtttttgaaaaagagaa 45311799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 257 - 292
Target Start/End: Original strand, 7879151 - 7879186
Alignment:
Q  257 taagctgttttgcataagctgtttttgaaaaagaga 292  Q
    |||||||||||| |||||||||||||||||||||||    
T  7879151 taagctgttttgaataagctgtttttgaaaaagaga 7879186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 257 - 292
Target Start/End: Original strand, 7879571 - 7879606
Alignment:
Q  257 taagctgttttgcataagctgtttttgaaaaagaga 292  Q
    |||||||||||| |||||||||||||||||||||||    
T  7879571 taagctgttttgaataagctgtttttgaaaaagaga 7879606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 257 - 292
Target Start/End: Original strand, 14753863 - 14753898
Alignment:
Q  257 taagctgttttgcataagctgtttttgaaaaagaga 292  Q
    |||||||||||| |||||||||||||||||||||||    
T  14753863 taagctgttttgaataagctgtttttgaaaaagaga 14753898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 257 - 292
Target Start/End: Complemental strand, 27274316 - 27274281
Alignment:
Q  257 taagctgttttgcataagctgtttttgaaaaagaga 292  Q
    |||||||||||| |||||||||||||||||||||||    
T  27274316 taagctgttttgaataagctgtttttgaaaaagaga 27274281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 257 - 292
Target Start/End: Complemental strand, 45312015 - 45311980
Alignment:
Q  257 taagctgttttgcataagctgtttttgaaaaagaga 292  Q
    |||||||||||| |||||||||||||||||||||||    
T  45312015 taagctgttttgaataagctgtttttgaaaaagaga 45311980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 257 - 292
Target Start/End: Complemental strand, 48188125 - 48188090
Alignment:
Q  257 taagctgttttgcataagctgtttttgaaaaagaga 292  Q
    |||||||||||| |||||||||||||||||||||||    
T  48188125 taagctgttttgaataagctgtttttgaaaaagaga 48188090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 257 - 291
Target Start/End: Complemental strand, 14753282 - 14753248
Alignment:
Q  257 taagctgttttgcataagctgtttttgaaaaagag 291  Q
    |||||||||||| ||||||||||||||||||||||    
T  14753282 taagctgttttgaataagctgtttttgaaaaagag 14753248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 257 - 291
Target Start/End: Complemental strand, 14753401 - 14753367
Alignment:
Q  257 taagctgttttgcataagctgtttttgaaaaagag 291  Q
    |||||||||||| ||||||||||||||||||||||    
T  14753401 taagctgttttgaataagctgtttttgaaaaagag 14753367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 257 - 291
Target Start/End: Complemental strand, 20360980 - 20360946
Alignment:
Q  257 taagctgttttgcataagctgtttttgaaaaagag 291  Q
    |||||||||||| ||||||||||||||||||||||    
T  20360980 taagctgttttgaataagctgtttttgaaaaagag 20360946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 257 - 291
Target Start/End: Original strand, 20549990 - 20550024
Alignment:
Q  257 taagctgttttgcataagctgtttttgaaaaagag 291  Q
    |||||||||||| ||||||||||||||||||||||    
T  20549990 taagctgttttgaataagctgtttttgaaaaagag 20550024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 257 - 291
Target Start/End: Complemental strand, 28728341 - 28728307
Alignment:
Q  257 taagctgttttgcataagctgtttttgaaaaagag 291  Q
    |||||||||||| ||||||||||||||||||||||    
T  28728341 taagctgttttgaataagctgtttttgaaaaagag 28728307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 257 - 290
Target Start/End: Original strand, 7879331 - 7879364
Alignment:
Q  257 taagctgttttgcataagctgtttttgaaaaaga 290  Q
    |||||||||||| |||||||||||||||||||||    
T  7879331 taagctgttttgaataagctgtttttgaaaaaga 7879364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 257 - 290
Target Start/End: Complemental strand, 20361325 - 20361292
Alignment:
Q  257 taagctgttttgcataagctgtttttgaaaaaga 290  Q
    |||||||||||| |||||||||||||||||||||    
T  20361325 taagctgttttgaataagctgtttttgaaaaaga 20361292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 257 - 290
Target Start/End: Original strand, 20549585 - 20549618
Alignment:
Q  257 taagctgttttgcataagctgtttttgaaaaaga 290  Q
    |||||||||||| |||||||||||||||||||||    
T  20549585 taagctgttttgaataagctgtttttgaaaaaga 20549618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0136 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: scaffold0136
Description:

Target: scaffold0136; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 257 - 292
Target Start/End: Complemental strand, 11885 - 11850
Alignment:
Q  257 taagctgttttgcataagctgtttttgaaaaagaga 292  Q
    |||||||||||| |||||||||||||||||||||||    
T  11885 taagctgttttgaataagctgtttttgaaaaagaga 11850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0087 (Bit Score: 32; Significance: 0.000000007; HSPs: 3)
Name: scaffold0087
Description:

Target: scaffold0087; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 257 - 292
Target Start/End: Complemental strand, 9048 - 9013
Alignment:
Q  257 taagctgttttgcataagctgtttttgaaaaagaga 292  Q
    |||||||||||| |||||||||||||||||||||||    
T  9048 taagctgttttgaataagctgtttttgaaaaagaga 9013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0087; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 257 - 292
Target Start/End: Complemental strand, 9394 - 9359
Alignment:
Q  257 taagctgttttgcataagctgtttttgaaaaagaga 292  Q
    |||||||||||| |||||||||||||||||||||||    
T  9394 taagctgttttgaataagctgtttttgaaaaagaga 9359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0087; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 257 - 291
Target Start/End: Complemental strand, 9334 - 9300
Alignment:
Q  257 taagctgttttgcataagctgtttttgaaaaagag 291  Q
    |||||||||||| ||||||||||||||||||||||    
T  9334 taagctgttttgaataagctgtttttgaaaaagag 9300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0063 (Bit Score: 32; Significance: 0.000000007; HSPs: 2)
Name: scaffold0063
Description:

Target: scaffold0063; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 257 - 292
Target Start/End: Complemental strand, 2352 - 2317
Alignment:
Q  257 taagctgttttgcataagctgtttttgaaaaagaga 292  Q
    |||||||||||| |||||||||||||||||||||||    
T  2352 taagctgttttgaataagctgtttttgaaaaagaga 2317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0063; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 257 - 292
Target Start/End: Complemental strand, 2532 - 2497
Alignment:
Q  257 taagctgttttgcataagctgtttttgaaaaagaga 292  Q
    |||||||||||| |||||||||||||||||||||||    
T  2532 taagctgttttgaataagctgtttttgaaaaagaga 2497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 32; Significance: 0.000000007; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 257 - 292
Target Start/End: Complemental strand, 23675139 - 23675104
Alignment:
Q  257 taagctgttttgcataagctgtttttgaaaaagaga 292  Q
    |||||||||||| |||||||||||||||||||||||    
T  23675139 taagctgttttgaataagctgtttttgaaaaagaga 23675104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 257 - 292
Target Start/End: Complemental strand, 43204998 - 43204963
Alignment:
Q  257 taagctgttttgcataagctgtttttgaaaaagaga 292  Q
    |||||||||||| |||||||||||||||||||||||    
T  43204998 taagctgttttgaataagctgtttttgaaaaagaga 43204963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 257 - 292
Target Start/End: Complemental strand, 43205256 - 43205221
Alignment:
Q  257 taagctgttttgcataagctgtttttgaaaaagaga 292  Q
    |||||||||||| |||||||||||||||||||||||    
T  43205256 taagctgttttgaataagctgtttttgaaaaagaga 43205221  T

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Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 257 - 291
Target Start/End: Original strand, 34323759 - 34323793
Alignment:
Q  257 taagctgttttgcataagctgtttttgaaaaagag 291  Q
    |||||||||||| ||||||||||||||||||||||    
T  34323759 taagctgttttgaataagctgtttttgaaaaagag 34323793  T

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Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 257 - 291
Target Start/End: Complemental strand, 42576747 - 42576713
Alignment:
Q  257 taagctgttttgcataagctgtttttgaaaaagag 291  Q
    |||||||||||| ||||||||||||||||||||||    
T  42576747 taagctgttttgaataagctgtttttgaaaaagag 42576713  T

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Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 257 - 289
Target Start/End: Complemental strand, 19383245 - 19383213
Alignment:
Q  257 taagctgttttgcataagctgtttttgaaaaag 289  Q
    |||||||||||||||||||| ||||||||||||    
T  19383245 taagctgttttgcataagctatttttgaaaaag 19383213  T

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Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 256 - 292
Target Start/End: Original strand, 40673697 - 40673733
Alignment:
Q  256 ctaagctgttttgcataagctgtttttgaaaaagaga 292  Q
    ||||| ||||||| |||||||||||||||||||||||    
T  40673697 ctaagttgttttgaataagctgtttttgaaaaagaga 40673733  T

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Target: chr7 (Bit Score: 32; Significance: 0.000000007; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 257 - 292
Target Start/End: Complemental strand, 2130803 - 2130768
Alignment:
Q  257 taagctgttttgcataagctgtttttgaaaaagaga 292  Q
    |||||||||||| |||||||||||||||||||||||    
T  2130803 taagctgttttgaataagctgtttttgaaaaagaga 2130768  T

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Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 257 - 292
Target Start/End: Complemental strand, 2131268 - 2131233
Alignment:
Q  257 taagctgttttgcataagctgtttttgaaaaagaga 292  Q
    |||||||||||| |||||||||||||||||||||||    
T  2131268 taagctgttttgaataagctgtttttgaaaaagaga 2131233  T

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Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 257 - 292
Target Start/End: Original strand, 2133181 - 2133216
Alignment:
Q  257 taagctgttttgcataagctgtttttgaaaaagaga 292  Q
    |||||||||||| |||||||||||||||||||||||    
T  2133181 taagctgttttgaataagctgtttttgaaaaagaga 2133216  T

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Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 257 - 292
Target Start/End: Original strand, 9195151 - 9195186
Alignment:
Q  257 taagctgttttgcataagctgtttttgaaaaagaga 292  Q
    |||||||||||| |||||||||||||||||||||||    
T  9195151 taagctgttttgaataagctgtttttgaaaaagaga 9195186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 257 - 292
Target Start/End: Original strand, 20538714 - 20538749
Alignment:
Q  257 taagctgttttgcataagctgtttttgaaaaagaga 292  Q
    |||||||||||| |||||||||||||||||||||||    
T  20538714 taagctgttttgaataagctgtttttgaaaaagaga 20538749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 257 - 292
Target Start/End: Complemental strand, 27748294 - 27748259
Alignment:
Q  257 taagctgttttgcataagctgtttttgaaaaagaga 292  Q
    |||||||||||| |||||||||||||||||||||||    
T  27748294 taagctgttttgaataagctgtttttgaaaaagaga 27748259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 257 - 292
Target Start/End: Original strand, 27748478 - 27748513
Alignment:
Q  257 taagctgttttgcataagctgtttttgaaaaagaga 292  Q
    |||||||||||| |||||||||||||||||||||||    
T  27748478 taagctgttttgaataagctgtttttgaaaaagaga 27748513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 257 - 291
Target Start/End: Complemental strand, 11562766 - 11562732
Alignment:
Q  257 taagctgttttgcataagctgtttttgaaaaagag 291  Q
    |||||||||||| ||||||||||||||||||||||    
T  11562766 taagctgttttgaataagctgtttttgaaaaagag 11562732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 257 - 290
Target Start/End: Complemental strand, 27748174 - 27748141
Alignment:
Q  257 taagctgttttgcataagctgtttttgaaaaaga 290  Q
    |||||||||||| |||||||||||||||||||||    
T  27748174 taagctgttttgaataagctgtttttgaaaaaga 27748141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 32; Significance: 0.000000007; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 257 - 292
Target Start/End: Complemental strand, 5402178 - 5402143
Alignment:
Q  257 taagctgttttgcataagctgtttttgaaaaagaga 292  Q
    |||||||||||| |||||||||||||||||||||||    
T  5402178 taagctgttttgaataagctgtttttgaaaaagaga 5402143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 257 - 292
Target Start/End: Complemental strand, 5402462 - 5402427
Alignment:
Q  257 taagctgttttgcataagctgtttttgaaaaagaga 292  Q
    |||||||||||| |||||||||||||||||||||||    
T  5402462 taagctgttttgaataagctgtttttgaaaaagaga 5402427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 257 - 292
Target Start/End: Complemental strand, 5402746 - 5402711
Alignment:
Q  257 taagctgttttgcataagctgtttttgaaaaagaga 292  Q
    |||||||||||| |||||||||||||||||||||||    
T  5402746 taagctgttttgaataagctgtttttgaaaaagaga 5402711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 257 - 292
Target Start/End: Original strand, 28509109 - 28509144
Alignment:
Q  257 taagctgttttgcataagctgtttttgaaaaagaga 292  Q
    |||||||||||| |||||||||||||||||||||||    
T  28509109 taagctgttttgaataagctgtttttgaaaaagaga 28509144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 257 - 292
Target Start/End: Complemental strand, 29730996 - 29730961
Alignment:
Q  257 taagctgttttgcataagctgtttttgaaaaagaga 292  Q
    |||||||||||| |||||||||||||||||||||||    
T  29730996 taagctgttttgaataagctgtttttgaaaaagaga 29730961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 32; Significance: 0.000000007; HSPs: 13)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 257 - 292
Target Start/End: Original strand, 6617281 - 6617316
Alignment:
Q  257 taagctgttttgcataagctgtttttgaaaaagaga 292  Q
    |||||||||||| |||||||||||||||||||||||    
T  6617281 taagctgttttgaataagctgtttttgaaaaagaga 6617316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 257 - 292
Target Start/End: Original strand, 6617567 - 6617602
Alignment:
Q  257 taagctgttttgcataagctgtttttgaaaaagaga 292  Q
    |||||||||||| |||||||||||||||||||||||    
T  6617567 taagctgttttgaataagctgtttttgaaaaagaga 6617602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 257 - 292
Target Start/End: Complemental strand, 6619063 - 6619028
Alignment:
Q  257 taagctgttttgcataagctgtttttgaaaaagaga 292  Q
    |||||||||||| |||||||||||||||||||||||    
T  6619063 taagctgttttgaataagctgtttttgaaaaagaga 6619028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 257 - 292
Target Start/End: Original strand, 6619389 - 6619424
Alignment:
Q  257 taagctgttttgcataagctgtttttgaaaaagaga 292  Q
    |||||||||||| |||||||||||||||||||||||    
T  6619389 taagctgttttgaataagctgtttttgaaaaagaga 6619424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 257 - 292
Target Start/End: Original strand, 6619610 - 6619645
Alignment:
Q  257 taagctgttttgcataagctgtttttgaaaaagaga 292  Q
    |||||||||||| |||||||||||||||||||||||    
T  6619610 taagctgttttgaataagctgtttttgaaaaagaga 6619645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 257 - 292
Target Start/End: Original strand, 6619832 - 6619867
Alignment:
Q  257 taagctgttttgcataagctgtttttgaaaaagaga 292  Q
    |||||||||||| |||||||||||||||||||||||    
T  6619832 taagctgttttgaataagctgtttttgaaaaagaga 6619867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 257 - 292
Target Start/End: Complemental strand, 10377697 - 10377662
Alignment:
Q  257 taagctgttttgcataagctgtttttgaaaaagaga 292  Q
    |||||||||||| |||||||||||||||||||||||    
T  10377697 taagctgttttgaataagctgtttttgaaaaagaga 10377662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 257 - 292
Target Start/End: Complemental strand, 21572765 - 21572730
Alignment:
Q  257 taagctgttttgcataagctgtttttgaaaaagaga 292  Q
    |||||||||||| |||||||||||||||||||||||    
T  21572765 taagctgttttgaataagctgtttttgaaaaagaga 21572730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 257 - 292
Target Start/End: Complemental strand, 24075752 - 24075717
Alignment:
Q  257 taagctgttttgcataagctgtttttgaaaaagaga 292  Q
    |||||||||||| |||||||||||||||||||||||    
T  24075752 taagctgttttgaataagctgtttttgaaaaagaga 24075717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 257 - 292
Target Start/End: Original strand, 24076953 - 24076988
Alignment:
Q  257 taagctgttttgcataagctgtttttgaaaaagaga 292  Q
    |||||||||||| |||||||||||||||||||||||    
T  24076953 taagctgttttgaataagctgtttttgaaaaagaga 24076988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 257 - 292
Target Start/End: Complemental strand, 42379884 - 42379849
Alignment:
Q  257 taagctgttttgcataagctgtttttgaaaaagaga 292  Q
    |||||||||||| |||||||||||||||||||||||    
T  42379884 taagctgttttgaataagctgtttttgaaaaagaga 42379849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 257 - 291
Target Start/End: Original strand, 42380500 - 42380534
Alignment:
Q  257 taagctgttttgcataagctgtttttgaaaaagag 291  Q
    |||||||||||| ||||||||||||||||||||||    
T  42380500 taagctgttttgaataagctgtttttgaaaaagag 42380534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 257 - 289
Target Start/End: Original strand, 23101416 - 23101448
Alignment:
Q  257 taagctgttttgcataagctgtttttgaaaaag 289  Q
    |||||||||||| ||||||||||||||||||||    
T  23101416 taagctgttttgaataagctgtttttgaaaaag 23101448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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