View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15860_low_8 (Length: 311)
Name: NF15860_low_8
Description: NF15860
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15860_low_8 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 268; Significance: 1e-149; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 268; E-Value: 1e-149
Query Start/End: Original strand, 5 - 311
Target Start/End: Original strand, 3983217 - 3983523
Alignment:
| Q |
5 |
agtcgagtgagaagaaagttcatacatgttcgaaaggattgttaacaaagaattcgtacataagttgaaattcccatgttatgcattttcgtaacttgaa |
104 |
Q |
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| T |
3983217 |
agtcgagtgatgagaaagttcatacatgttcgaaaggattgttaacaaagaattcgtacataagttgaaattcccatgttatgcattttcgtaacttgaa |
3983316 |
T |
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| Q |
105 |
aaagaacgagtcagtccaatttttagagtttagtnnnnnnnnnttatgacttcaaaggtattaaagaactggttcaagttaaataaatgaatttatagtg |
204 |
Q |
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| T |
3983317 |
aaagaacgagtcagtccaatttttagagtttagtaaaaaaaaattatgacttctaaggtattaaagaactggttcaagttaaataaatgaatttatagtg |
3983416 |
T |
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| Q |
205 |
cctaacttggatcaaatcaactgaattttctgacaggttggattagcggcttttgatttgaggtctgcttcactgcacctttcacaatatattgaaacca |
304 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3983417 |
cctaacttggatcaaatcaactgaattttctgacaggttggattagcggcttttgatttgaggtctgcttcactgcacctttcacaatatattgaaacca |
3983516 |
T |
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| Q |
305 |
gtagttc |
311 |
Q |
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| T |
3983517 |
gtagttc |
3983523 |
T |
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