View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15860_low_9 (Length: 311)

Name: NF15860_low_9
Description: NF15860
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15860_low_9
NF15860_low_9
[»] chr5 (19 HSPs)
chr5 (18-300)||(10558158-10558440)
chr5 (19-187)||(19606555-19606723)
chr5 (41-183)||(10564382-10564524)
chr5 (38-183)||(10611065-10611210)
chr5 (19-155)||(7192388-7192524)
chr5 (19-183)||(10604107-10604271)
chr5 (19-157)||(10652889-10653027)
chr5 (31-289)||(10747717-10747975)
chr5 (105-157)||(10589203-10589255)
chr5 (47-183)||(10763851-10763987)
chr5 (23-149)||(10717634-10717760)
chr5 (19-183)||(10217439-10217603)
chr5 (106-184)||(9837105-9837183)
chr5 (33-183)||(10741403-10741553)
chr5 (19-183)||(11049347-11049511)
chr5 (19-157)||(10580372-10580510)
chr5 (19-157)||(10660775-10660913)
chr5 (216-293)||(9837215-9837292)
chr5 (106-183)||(10601210-10601287)
[»] chr6 (5 HSPs)
chr6 (38-183)||(12931634-12931779)
chr6 (38-183)||(12906545-12906690)
chr6 (38-183)||(12957433-12957578)
chr6 (48-183)||(12947999-12948134)
chr6 (38-183)||(12898925-12899070)
[»] chr2 (1 HSPs)
chr2 (38-183)||(17924112-17924257)


Alignment Details
Target: chr5 (Bit Score: 254; Significance: 1e-141; HSPs: 19)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 18 - 300
Target Start/End: Complemental strand, 10558440 - 10558158
Alignment:
Q  18 taaagacaccttcttttggaacctctccatccaacatgttaaatgaaacgttcaagtgttctaaacgagaaatattttgcagaatgttaggaattgatcc 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10558440 taaagacaccttcttttggaacctctccatccaacatgttaaatgaaacgttcaagtgttctaaacgagaaatattttgcagaatgttaggaattgatcc 10558341  T
Q  118 agacaattgatttcttgacatgtctaaatatcgaagacctcttatataagccaaagaggaaggtatgatttgatggaaggaatttccttgcnnnnnnngg 217  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||       ||    
T  10558340 agacaattgatttcttgacatgtctaaatatcgaagacctcttatataagccaaagaggaaggtatgatttgatggaaggaatttccttgcaaaaaaagg 10558241  T
Q  218 tattctaatcttttgcattgatcaatggttataggaatttcaccagacaaattattctcagagaaatctagcttattagtatt 300  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  10558240 tattctaagcttttgcattgatcaatggttataggaatttcaccagacaaattattctcagagaaatctagcttattaatatt 10558158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 19 - 187
Target Start/End: Original strand, 19606555 - 19606723
Alignment:
Q  19 aaagacaccttcttttggaacctctccatccaacatgttaaatgaaacgttcaagtgttctaaacgagaaatattttgcagaatgttaggaattgatcca 118  Q
    ||||||||||||||| |||||||||||||||||||||||||| ||||| ||||||| |||||||  |||||||||||||||||   ||||||||||||||    
T  19606555 aaagacaccttctttaggaacctctccatccaacatgttaaaagaaacattcaagtattctaaaacagaaatattttgcagaacactaggaattgatcca 19606654  T
Q  119 gacaattgatttcttgacatgtctaaatatcgaagacctcttatataagccaaagaggaaggtatgatt 187  Q
    | |||  |||||||||| | ||||||||||||||||||||| | | |||| |||||||| |||||||||    
T  19606655 gtcaaccgatttcttgataggtctaaatatcgaagacctctaagagaagctaaagaggatggtatgatt 19606723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 41 - 183
Target Start/End: Complemental strand, 10564524 - 10564382
Alignment:
Q  41 tctccatccaacatgttaaatgaaacgttcaagtgttctaaacgagaaatattttgcagaatgttaggaattgatccagacaattgatttcttgacatgt 140  Q
    ||||| |||||||||||||| ||||| ||||| | |||||||  ||| |||||||||| ||  | |||||||||||||||||||||||||||||| | ||    
T  10564524 tctccttccaacatgttaaaagaaacattcaaatattctaaaacagagatattttgcataacatcaggaattgatccagacaattgatttcttgaaaggt 10564425  T
Q  141 ctaaatatcgaagacctcttatataagccaaagaggaaggtat 183  Q
    ||||||||||||||||| | | | |||||| |||||| |||||    
T  10564424 ctaaatatcgaagacctttgagagaagccatagaggacggtat 10564382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 38 - 183
Target Start/End: Complemental strand, 10611210 - 10611065
Alignment:
Q  38 acctctccatccaacatgttaaatgaaacgttcaagtgttctaaacgagaaatattttgcagaatgttaggaattgatccagacaattgatttcttgaca 137  Q
    ||||| || |||| ||||||||| ||||| ||||||||||||||||  || ||||  |||| ||  | ||||||||||||||||||||||||| |||| |    
T  10611210 acctcaccttccagcatgttaaaagaaacattcaagtgttctaaacatgagatatcctgcataacatcaggaattgatccagacaattgatttgttgaaa 10611111  T
Q  138 tgtctaaatatcgaagacctcttatataagccaaagaggaaggtat 183  Q
     ||||||||||||||||||| | | | |||||||||||||||||||    
T  10611110 ggtctaaatatcgaagacctttgagagaagccaaagaggaaggtat 10611065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 19 - 155
Target Start/End: Complemental strand, 7192524 - 7192388
Alignment:
Q  19 aaagacaccttcttttggaacctctccatccaacatgttaaatgaaacgttcaagtgttctaaacgagaaatattttgcagaatgttaggaattgatcca 118  Q
    ||||||||||||| |||| ||||| || ||||||||||| || ||||| |||||||||||||||   || ||||| || ||||  |||||||||| ||||    
T  7192524 aaagacaccttctgttggtacctcgccttccaacatgttgaaagaaacattcaagtgttctaaaactgatatattctgtagaacattaggaattggtcca 7192425  T
Q  119 gacaattgatttcttgacatgtctaaatatcgaagac 155  Q
     ||||  |||||||||||| |||||||||| ||||||    
T  7192424 tacaaccgatttcttgacaggtctaaatattgaagac 7192388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 19 - 183
Target Start/End: Complemental strand, 10604271 - 10604107
Alignment:
Q  19 aaagacaccttcttttggaacctctccatccaacatgttaaatgaaacgttcaagtgttctaaacgagaaatattttgcagaatgttaggaattgatcca 118  Q
    ||||||||| | | |||| ||||| || |||||||||||||| ||||| |||||||||||||| | ||| ||||| |||| ||  | |||||||| ||||    
T  10604271 aaagacaccgtttgttggcacctcaccttccaacatgttaaaggaaacattcaagtgttctaagctagagatattctgcaaaacatcaggaattggtcca 10604172  T
Q  119 gacaattgatttcttgacatgtctaaatatcgaagacctcttatataagccaaagaggaaggtat 183  Q
     |||||||||||||||| || ||||||||| | |||||| | | | |||| |||||||| |||||    
T  10604171 tacaattgatttcttgaaatatctaaatattgtagacctttgagagaagcaaaagaggatggtat 10604107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 19 - 157
Target Start/End: Original strand, 10652889 - 10653027
Alignment:
Q  19 aaagacaccttcttttggaacctctccatccaacatgttaaatgaaacgttcaagtgttctaaacgagaaatattttgcagaatgttaggaattgatcca 118  Q
    ||||||||||||||| || || ||||| ||||||||||| || ||||| |||||||||||||||   || ||| |||| ||||  || ||||||| ||||    
T  10652889 aaagacaccttctttcggtacttctccttccaacatgttgaaagaaacattcaagtgttctaaaactgatatactttgtagaacatttggaattggtcca 10652988  T
Q  119 gacaattgatttcttgacatgtctaaatatcgaagacct 157  Q
     ||||  |||||||||||| |||||||||| ||||||||    
T  10652989 tacaaccgatttcttgacaagtctaaatattgaagacct 10653027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 31 - 289
Target Start/End: Original strand, 10747717 - 10747975
Alignment:
Q  31 ttttggaacctctccatccaacatgttaaatgaaacgttcaagtgttctaaacgagaaatattttgcagaatgttaggaattgatccagacaattgattt 130  Q
    |||||| ||||| || |||||||||||||| ||||| ||||| | |||||||  ||| |||||||||| ||  | ||||||||| ||||||||| |||||    
T  10747717 ttttggtacctcaccttccaacatgttaaaagaaacattcaaatattctaaaacagagatattttgcataacatcaggaattgacccagacaatcgattt 10747816  T
Q  131 cttgacatgtctaaatatcgaagacctcttatataagccaaagaggaaggtatgatttgatggaaggaatttccttgcnnnnnnnggtattctaatcttt 230  Q
    ||||| | |||||||| | ||||||||   | | ||||||||||||| |||||  ||  || |||||| || ||||||       ||||||||||   |     
T  10747817 cttgaaaggtctaaatgttgaagaccttcgagagaagccaaagaggatggtattgttccattgaaggagttcccttgcaggtgaaggtattctaaggctg 10747916  T
Q  231 tgcattgatcaatggttataggaatttcaccagacaaattattctcagagaaatctagc 289  Q
    |||| | | |||| ||| ||||||| |||||||| | || ||||||||||| |||||||    
T  10747917 tgcaatcaccaattgttgtaggaatatcaccagatagatgattctcagagacatctagc 10747975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 105 - 157
Target Start/End: Original strand, 10589203 - 10589255
Alignment:
Q  105 taggaattgatccagacaattgatttcttgacatgtctaaatatcgaagacct 157  Q
    ||||||||||||||||||| |||||||||||||||||||||||| ||||||||    
T  10589203 taggaattgatccagacaactgatttcttgacatgtctaaatattgaagacct 10589255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 47 - 183
Target Start/End: Original strand, 10763851 - 10763987
Alignment:
Q  47 tccaacatgttaaatgaaacgttcaagtgttctaaacgagaaatattttgcagaatgttaggaattgatccagacaattgatttcttgacatgtctaaat 146  Q
    |||||||||||||| ||||| ||||| | |||| ||  ||| |||||||||| ||  | |||||||||||||||||||||||||||||| | |||||||     
T  10763851 tccaacatgttaaaagaaacattcaaatattcttaaacagatatattttgcataacatcaggaattgatccagacaattgatttcttgaaaggtctaaac 10763950  T
Q  147 atcgaagacctcttatataagccaaagaggaaggtat 183  Q
     | |||||||| | | | |||||| |||||| |||||    
T  10763951 tttgaagacctttgagagaagccatagaggatggtat 10763987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 23 - 149
Target Start/End: Original strand, 10717634 - 10717760
Alignment:
Q  23 acaccttcttttggaacctctccatccaacatgttaaatgaaacgttcaagtgttctaaacgagaaatattttgcagaatgttaggaattgatccagaca 122  Q
    ||||| ||| |||| ||||| || |||||||||||||| ||||| |||||||||||||||| | | || || |||| ||  | |||||||| |||  |||    
T  10717634 acaccatctgttggtacctcaccttccaacatgttaaaagaaacattcaagtgttctaaaccatagattttctgcataacatcaggaattggtccgtaca 10717733  T
Q  123 attgatttcttgacatgtctaaatatc 149  Q
    ||||||||||||| | |||||||||||    
T  10717734 attgatttcttgaaaggtctaaatatc 10717760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 19 - 183
Target Start/End: Original strand, 10217439 - 10217603
Alignment:
Q  19 aaagacaccttcttttggaacctctccatccaacatgttaaatgaaacgttcaagtgttctaaacgagaaatattttgcagaatgttaggaattgatcca 118  Q
    ||||||||| | | |||| ||||| || |||||||||||||| ||||| |||||||||| ||||| ||| ||||| || |  |  || ||||||||||||    
T  10217439 aaagacaccgtttgttggtacctccccttccaacatgttaaaagaaacattcaagtgttttaaaccagagatattctgtatgacatttggaattgatcca 10217538  T
Q  119 gacaattgatttcttgacatgtctaaatatcgaagacctcttatataagccaaagaggaaggtat 183  Q
     | ||||||||||| || | ||||||||||  ||||||| | |   ||||||||||||| |||||    
T  10217539 taaaattgatttctggaaaggtctaaatataaaagacctttgagcgaagccaaagaggatggtat 10217603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 106 - 184
Target Start/End: Original strand, 9837105 - 9837183
Alignment:
Q  106 aggaattgatccagacaattgatttcttgacatgtctaaatatcgaagacctcttatataagccaaagaggaaggtatg 184  Q
    |||||||||||||||||| |||||||| ||||||||||||||| ||||| || | | | | ||||||| ||||||||||    
T  9837105 aggaattgatccagacaactgatttctagacatgtctaaatattgaagaactttgagagatgccaaagtggaaggtatg 9837183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 33 - 183
Target Start/End: Original strand, 10741403 - 10741553
Alignment:
Q  33 ttggaacctctccatccaacatgttaaatgaaacgttcaagtgttctaaacgagaaatattttgcagaatgttaggaattgatccagacaattgatttct 132  Q
    |||| |||||||| ||||| | |||||| ||||| ||||||| ||| |||| ||| ||| | | || ||  | |||||||||||||||||||||||||||    
T  10741403 ttggtacctctccttccaataagttaaaagaaacattcaagtattccaaaccagagatactcttcataacatcaggaattgatccagacaattgatttct 10741502  T
Q  133 tgacatgtctaaatatcgaagacctcttatataagccaaagaggaaggtat 183  Q
    ||| | |||||||  | |||||||| | | | |||||| |||||| |||||    
T  10741503 tgaaaggtctaaactttgaagacctttgagagaagccatagaggatggtat 10741553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 19 - 183
Target Start/End: Original strand, 11049347 - 11049511
Alignment:
Q  19 aaagacaccttcttttggaacctctccatccaacatgttaaatgaaacgttcaagtgttctaaacgagaaatattttgcagaatgttaggaattgatcca 118  Q
    ||||||||| | | |||| ||||| || ||||||| |||||| ||||| |||||||||| ||||| | | ||||| || | ||  || ||||||||||||    
T  11049347 aaagacaccgtttgttggtacctcgccttccaacaggttaaaagaaacattcaagtgttttaaaccaaagatattctgtataacatttggaattgatcca 11049446  T
Q  119 gacaattgatttcttgacatgtctaaatatcgaagacctcttatataagccaaagaggaaggtat 183  Q
     | ||||||||||| || | ||||||||||  ||||||| | |   ||||||||||||| |||||    
T  11049447 taaaattgatttctagaaaggtctaaatataaaagacctttgagcgaagccaaagaggacggtat 11049511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 19 - 157
Target Start/End: Complemental strand, 10580510 - 10580372
Alignment:
Q  19 aaagacaccttcttttggaacctctccatccaacatgttaaatgaaacgttcaagtgttctaaacgagaaatattttgcagaatgttaggaattgatcca 118  Q
    ||||||||| ||| |||| ||||| || |||||||||||||| ||||| |  |||| |||||||  ||| |||||||||| ||  |  ||| ||| ||||    
T  10580510 aaagacaccatctgttggtacctcaccttccaacatgttaaaagaaacatctaagtattctaaattagagatattttgcataacatcgggatttggtcca 10580411  T
Q  119 gacaattgatttcttgacatgtctaaatatcgaagacct 157  Q
     |||||| ||||||||| || |||||||| || ||||||    
T  10580410 aacaatttatttcttgaaatatctaaataccgtagacct 10580372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 19 - 157
Target Start/End: Original strand, 10660775 - 10660913
Alignment:
Q  19 aaagacaccttcttttggaacctctccatccaacatgttaaatgaaacgttcaagtgttctaaacgagaaatattttgcagaatgttaggaattgatcca 118  Q
    ||||||||||||  |||| ||||| || ||||||||||| || || || |||||||||| ||||   || ||||| || ||||  || ||||| | ||||    
T  10660775 aaagacaccttccattggtacctcgccttccaacatgttgaaagatacattcaagtgttttaaaactgatatattctgtagaacatttggaatcggtcca 10660874  T
Q  119 gacaattgatttcttgacatgtctaaatatcgaagacct 157  Q
    |||||| |||||| ||||| ||||| |||| ||||||||    
T  10660875 gacaatcgatttcctgacaagtctagatattgaagacct 10660913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 216 - 293
Target Start/End: Original strand, 9837215 - 9837292
Alignment:
Q  216 ggtattctaatcttttgcattgatcaatggttataggaatttcaccagacaaattattctcagagaaatctagcttat 293  Q
    |||||||||| ||| |||||| | |||| ||||| ||||| ||||| |||| || ||| ||||||| |||||||||||    
T  9837215 ggtattctaaacttatgcattcaccaattgttattggaatgtcacccgacagatgattttcagagacatctagcttat 9837292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 106 - 183
Target Start/End: Complemental strand, 10601287 - 10601210
Alignment:
Q  106 aggaattgatccagacaattgatttcttgacatgtctaaatatcgaagacctcttatataagccaaagaggaaggtat 183  Q
    |||||||| |||| |||||||||||||||| || ||||||||| | |||||| | | |  |||||||||||| |||||    
T  10601287 aggaattggtccatacaattgatttcttgaaatatctaaatattgtagacctttgagagcagccaaagaggatggtat 10601210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 62; Significance: 9e-27; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 38 - 183
Target Start/End: Complemental strand, 12931779 - 12931634
Alignment:
Q  38 acctctccatccaacatgttaaatgaaacgttcaagtgttctaaacgagaaatattttgcagaatgttaggaattgatccagacaattgatttcttgaca 137  Q
    |||||||| |||||||||||||| ||||| ||||| | |||||||  ||| |||||||||| |   | |||||||||||||||||||||||||||||| |    
T  12931779 acctctccttccaacatgttaaaagaaacattcaaatattctaaaacagagatattttgcataccatcaggaattgatccagacaattgatttcttgaaa 12931680  T
Q  138 tgtctaaatatcgaagacctcttatataagccaaagaggaaggtat 183  Q
     ||||||||||||||||||| | | | ||| ||||||||| |||||    
T  12931679 ggtctaaatatcgaagacctttgagaaaagtcaaagaggacggtat 12931634  T

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Target: chr6; HSP #2
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 38 - 183
Target Start/End: Complemental strand, 12906690 - 12906545
Alignment:
Q  38 acctctccatccaacatgttaaatgaaacgttcaagtgttctaaacgagaaatattttgcagaatgttaggaattgatccagacaattgatttcttgaca 137  Q
    |||||||| |||||||||||||| ||||| || || | ||| |||   || |||||||||| |   | |||||||||||||||||||||||||||||| |    
T  12906690 acctctccttccaacatgttaaaagaaacattaaaatattccaaaaatgagatattttgcataccatcaggaattgatccagacaattgatttcttgaaa 12906591  T
Q  138 tgtctaaatatcgaagacctcttatataagccaaagaggaaggtat 183  Q
     ||||||||||||||||||| | | | ||||||||||||| |||||    
T  12906590 ggtctaaatatcgaagacctttgagagaagccaaagaggacggtat 12906545  T

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Target: chr6; HSP #3
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 38 - 183
Target Start/End: Complemental strand, 12957578 - 12957433
Alignment:
Q  38 acctctccatccaacatgttaaatgaaacgttcaagtgttctaaacgagaaatattttgcagaatgttaggaattgatccagacaattgatttcttgaca 137  Q
    |||||||| ||||| |||||||| ||||| ||||| | |||||||  ||| |||||||||| |   | |||||||||||||||||||||||||||||| |    
T  12957578 acctctccttccaatatgttaaaagaaacattcaaatattctaaaacagagatattttgcataccatcaggaattgatccagacaattgatttcttgaaa 12957479  T
Q  138 tgtctaaatatcgaagacctcttatataagccaaagaggaaggtat 183  Q
     |||||||||| |||||||| | | | |||| |||||||| |||||    
T  12957478 cgtctaaatattgaagacctttgagagaagctaaagaggacggtat 12957433  T

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Target: chr6; HSP #4
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 48 - 183
Target Start/End: Complemental strand, 12948134 - 12947999
Alignment:
Q  48 ccaacatgttaaatgaaacgttcaagtgttctaaacgagaaatattttgcagaatgttaggaattgatccagacaattgatttcttgacatgtctaaata 147  Q
    ||||||||||||| ||||| ||||| |  ||||||  ||| |||||||||| |   | |||||||||||||||||||||||||||||| | |||||||||    
T  12948134 ccaacatgttaaaagaaacattcaaatactctaaaacagagatattttgcataccatcaggaattgatccagacaattgatttcttgaaaggtctaaata 12948035  T
Q  148 tcgaagacctcttatataagccaaagaggaaggtat 183  Q
    |||||||||| | | | ||| ||||||||| |||||    
T  12948034 tcgaagacctttgagaaaagtcaaagaggacggtat 12947999  T

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Target: chr6; HSP #5
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 38 - 183
Target Start/End: Complemental strand, 12899070 - 12898925
Alignment:
Q  38 acctctccatccaacatgttaaatgaaacgttcaagtgttctaaacgagaaatattttgcagaatgttaggaattgatccagacaattgatttcttgaca 137  Q
    |||||||| |||||||||||||| ||||| || || | ||| |||   || |||||||||| |   | |||||||||||||||||||||||||||||| |    
T  12899070 acctctccttccaacatgttaaaagaaacattaaaatattccaaaaatgagatattttgcataccatcaggaattgatccagacaattgatttcttgaaa 12898971  T
Q  138 tgtctaaatatcgaagacctcttatataagccaaagaggaaggtat 183  Q
     |||||||||| |||||||| | | | ||||||||||||| |||||    
T  12898970 agtctaaatattgaagacctttaagagaagccaaagaggacggtat 12898925  T

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Target: chr2 (Bit Score: 58; Significance: 2e-24; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 38 - 183
Target Start/End: Original strand, 17924112 - 17924257
Alignment:
Q  38 acctctccatccaacatgttaaatgaaacgttcaagtgttctaaacgagaaatattttgcagaatgttaggaattgatccagacaattgatttcttgaca 137  Q
    |||||||| |||||||||||||| ||||| ||||| | ||| |||   || |||||||||| |   | |||||||||||||||||||||||||||||| |    
T  17924112 acctctccttccaacatgttaaaagaaacattcaaatattccaaaaatgagatattttgcataccatcaggaattgatccagacaattgatttcttgaaa 17924211  T
Q  138 tgtctaaatatcgaagacctcttatataagccaaagaggaaggtat 183  Q
     ||||||||||||||||||| | | | ||||||||||||| |||||    
T  17924212 ggtctaaatatcgaagacctttgagagaagccaaagaggacggtat 17924257  T

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