View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15861_high_1 (Length: 815)
Name: NF15861_high_1
Description: NF15861
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15861_high_1 |
 | |
|
| [»] scaffold0159 (3 HSPs) |
| | |
|
Alignment Details
Target: chr2 (Bit Score: 771; Significance: 0; HSPs: 8)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 771; E-Value: 0
Query Start/End: Original strand, 14 - 796
Target Start/End: Original strand, 5767799 - 5768581
Alignment:
| Q |
14 |
caaaggtgatggatatgtaccagaagaaatgttcagggccagaaaaacaaggtgttcgttcagggcttgtgagtggtgcaggatttggtttctcttttgt |
113 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5767799 |
caaaggtgatggatatgtaccagaagaaatgttcagggccagaaaaacaaggtgttcattcagggcttgtgagtggtgcaggatttggtttctcttttgt |
5767898 |
T |
|
| Q |
114 |
cgctctatattgcatgagtgctttttgtttctacataggatctgtcctagtgcaacacgggaaagcaacttttcaagaagttttcaaggtacaacaatca |
213 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5767899 |
cgctctatattgcatgagtgctttttgtttctacataggatctgtcctagtgcaacacgggaaagcaacttttcaagaagttttcaaggtacaacaatca |
5767998 |
T |
|
| Q |
214 |
atcaacttaaagattctcaacatttacttgattcctttttgtcattctcatgagatattttatgcaggttttctttagtttaactataacagcagtaggc |
313 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5767999 |
atcaacttaaagattctcaacatttacttgattcctttttgtcattctcatgagatattttatgcaggttttctttagtttaactataacagcagtaggc |
5768098 |
T |
|
| Q |
314 |
atttcacagtctagtaccttggcacccgacactaataaggccaaagattctgcagcttcaatatttgaaattctagacagtaaccctactatcgactcca |
413 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5768099 |
atttcacagtctagtaccttggcacccgacactaataaggccaaagattctgcagcttcaatatttgaaattctagacagtaaccctactatcgactcca |
5768198 |
T |
|
| Q |
414 |
gcagcaatgaaggtgtcacattagaaacagtcacaggcgatattgaacttcaacatgtcagctttaattacccaacaagacctcacattcaaattttcaa |
513 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
5768199 |
gcagcaatgaaggtgtcacattagaaacagtcacaggcgatattgaacttcaacatgtcagcttcaattacccaacaagacctcacattcaaattttcaa |
5768298 |
T |
|
| Q |
514 |
agatttatgtctatacatccctgccggaaaggtaatcattactttagcgatgtcataattaatgagttgagaaaaatatttctcatttgagaacatgtga |
613 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5768299 |
agatttatgtctatacatccctgccggaaaggtaatcattactttagcgatgtcataattaatgagttgagaaaaatatttctcatttgagaacatgtga |
5768398 |
T |
|
| Q |
614 |
gataattgttgatatatttttatgtagactgctgctttggttggagaaagtggcagtggaaaatcaacagttataagtctcttagagagattttataacc |
713 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5768399 |
gataattgttgatatatttttatgtagactgttgctttggttggagaaagtggcagtggaaaatcaacagttataagtctcttagagagattttataacc |
5768498 |
T |
|
| Q |
714 |
ctgactctggacgtatattactagatggagtggatataaaaactttcagactaagctggttgagacaacagatgggtttggtt |
796 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5768499 |
ctgactctggacgtatattactagatggagtggatataaaaactttcagactaagctggttgagacaacagatgggtttggtt |
5768581 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 135; E-Value: 6e-70
Query Start/End: Original strand, 618 - 796
Target Start/End: Original strand, 5826856 - 5827034
Alignment:
| Q |
618 |
attgttgatatatttttatgtagactgctgctttggttggagaaagtggcagtggaaaatcaacagttataagtctcttagagagattttataaccctga |
717 |
Q |
| |
|
||||||||||||||| ||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
5826856 |
attgttgatatatttatatgtagactgttgccttggttggagaaagtggcagtggaaaatcaacagttataagtctcttggagagattttataaccctga |
5826955 |
T |
|
| Q |
718 |
ctctggacgtatattactagatggagtggatataaaaactttcagactaagctggttgagacaacagatgggtttggtt |
796 |
Q |
| |
|
||||||| |||||||||||||||| || |||| |||||||||| ||||||||||||||||||||| |||||||||||| |
|
|
| T |
5826956 |
ttctggacatatattactagatggactgaatatcaaaactttcaaactaagctggttgagacaacaaatgggtttggtt |
5827034 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 108; E-Value: 8e-54
Query Start/End: Original strand, 617 - 796
Target Start/End: Complemental strand, 5830046 - 5829867
Alignment:
| Q |
617 |
aattgttgatatatttttatgtagactgctgctttggttggagaaagtggcagtggaaaatcaacagttataagtctcttagagagattttataaccctg |
716 |
Q |
| |
|
||||| |||||||| | | || ||||| ||| |||||||||||||||||||||||||||||||||||||| || |||||||||||||||||| ||||| |
|
|
| T |
5830046 |
aattgatgatatatgtctttgcagactattgccttggttggagaaagtggcagtggaaaatcaacagttatcagcctcttagagagattttatgacccta |
5829947 |
T |
|
| Q |
717 |
actctggacgtatattactagatggagtggatataaaaactttcagactaagctggttgagacaacagatgggtttggtt |
796 |
Q |
| |
|
| |||||||||||||||||||||||||||||| | |||||||||||| ||||||||||||||||||| ||||| |||||| |
|
|
| T |
5829946 |
attctggacgtatattactagatggagtggatctcaaaactttcagattaagctggttgagacaacaaatggggttggtt |
5829867 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 105; E-Value: 5e-52
Query Start/End: Original strand, 14 - 520
Target Start/End: Complemental strand, 5830633 - 5830122
Alignment:
| Q |
14 |
caaaggtgatggatatgtaccagaagaaatgttcagggccagaaaaacaaggtgttcgttcagggcttgtgagtggtgcaggatttggtttctcttttgt |
113 |
Q |
| |
|
||||||||||||| |||||| || ||||||| ||| |||| |||||||| ||||| | |||||||| |||||| ||||||||| | ||| ||| | |
|
|
| T |
5830633 |
caaaggtgatggacatgtacagtaaaaaatgtttaggcccagcgaaacaaggagttcgcttggggcttgttagtggtataggatttggctgctcgttttt |
5830534 |
T |
|
| Q |
114 |
cgctctatattgcatgagtgctttttgtttctacataggatctgtcctagtgcaacacgggaaagcaacttttcaagaagttttcaaggtacaa-caatc |
212 |
Q |
| |
|
| ||||||||||| | |||||| ||| |||||||||||||| |||||||||||||| |||||||||||| ||||||||||| ||||||| || || |
|
|
| T |
5830533 |
agttctatattgcacaaatgctttcattttttacataggatctgttctagtgcaacacggcaaagcaacttttacagaagttttcagggtacaatcactc |
5830434 |
T |
|
| Q |
213 |
aatcaacttaaagattctcaacatttacttgattcctttttgtcat-----tctcatgagatattttatgcaggttttctttagtttaactataacagca |
307 |
Q |
| |
|
|| ||||||| || || | |||||||| | || || | || ||| | ||||| ||||| |||||||||||| |||||| || || ||| |
|
|
| T |
5830433 |
aaccaacttagc-atgctttatatttacttttatgtttattttgatctagttcttacaagataatttatacaggttttctttgctttaacaatgacggca |
5830335 |
T |
|
| Q |
308 |
gtaggcatttcacagtctagtaccttggcacccgacactaataaggccaaagattctgcagcttcaatatttgaaattctagacagtaaccctactatcg |
407 |
Q |
| |
|
| | | |||| ||| | | ||| |||||||| |||||||| |||||||||||||||||||||||||||||||||||| | ||||| || ||| ||| | |
|
|
| T |
5830334 |
atcgccgtttcgcagacgactacattggcaccagacactaacaaggccaaagattctgcagcttcaatatttgaaattattgacagcaaacctgatattg |
5830235 |
T |
|
| Q |
408 |
actccagcagcaatgaaggtgtcacattagaaacagtcacaggcgatattgaacttcaacatgtcagctttaattacccaacaagacctcacattcaaat |
507 |
Q |
| |
|
| ||||||||||||| ||||| ||| ||||||||| || |||||||||||||||||||||| |||||||||||||||||| || |||||||||| |
|
|
| T |
5830234 |
attccagcagcaatgcgggtgtaacacgagaaacagtagttggtgatattgaacttcaacatgtcaactttaattacccaacaaggcccgacattcaaat |
5830135 |
T |
|
| Q |
508 |
tttcaaagattta |
520 |
Q |
| |
|
||||||||||||| |
|
|
| T |
5830134 |
tttcaaagattta |
5830122 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 87; E-Value: 3e-41
Query Start/End: Original strand, 271 - 553
Target Start/End: Original strand, 5826401 - 5826683
Alignment:
| Q |
271 |
ttttatgcaggttttctttagtttaactataacagcagtaggcatttcacagtctagtaccttggcacccgacactaataaggccaaagattctgcagct |
370 |
Q |
| |
|
|||| ||||||||||||| ||||||| || |||||| |||| |||| ||| ||||| | || ||||| || ||||| ||||||||||||||| ||||| |
|
|
| T |
5826401 |
ttttgtgcaggttttcttctgtttaacaattacagcaataggtgtttcgcagactagtgctttagcaccagatactaacaaggccaaagattctacagct |
5826500 |
T |
|
| Q |
371 |
tcaatatttgaaattctagacagtaaccctactatcgactccagcagcaatgaaggtgtcacattagaaacagtcacaggcgatattgaacttcaacatg |
470 |
Q |
| |
|
||||||||||||||||||||||| || || || || ||||| || || ||||| |||| || ||||||| || | ||| ||| ||||||||||| | | |
|
|
| T |
5826501 |
tcaatatttgaaattctagacagcaaaccaaccattgactcaagtagtaatgagggtgcgacgctagaaactgtgaaaggtgattttgaacttcaaaaag |
5826600 |
T |
|
| Q |
471 |
tcagctttaattacccaacaagacctcacattcaaattttcaaagatttatgtctatacatccctgccggaaaggtaatcatt |
553 |
Q |
| |
|
||||||||| ||||||||||| ||| | |||||||| ||||||||||| ||||| |||||| || ||||||||||||||| |
|
|
| T |
5826601 |
tcagctttagatacccaacaaggcctaatattcaaatattcaaagatttgtgtcttagcatcccagctggaaaggtaatcatt |
5826683 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 79; E-Value: 2e-36
Query Start/End: Original strand, 271 - 553
Target Start/End: Original strand, 5781853 - 5782135
Alignment:
| Q |
271 |
ttttatgcaggttttctttagtttaactataacagcagtaggcatttcacagtctagtaccttggcacccgacactaataaggccaaagattctgcagct |
370 |
Q |
| |
|
|||| ||||||||||||| ||||||| || |||||| |||| |||| ||| || || | || || || || ||||| ||||||||||||||| ||||| |
|
|
| T |
5781853 |
ttttgtgcaggttttcttctgtttaacaattacagcaataggtgtttcgcagactcgtgctttagccccagatactaacaaggccaaagattctacagct |
5781952 |
T |
|
| Q |
371 |
tcaatatttgaaattctagacagtaaccctactatcgactccagcagcaatgaaggtgtcacattagaaacagtcacaggcgatattgaacttcaacatg |
470 |
Q |
| |
|
||||||||||||||||||||||| || || || || ||||| || || ||||| |||| || ||||||| || | ||| ||| ||||||||||| | | |
|
|
| T |
5781953 |
tcaatatttgaaattctagacagcaaaccaaccattgactcaagtagtaatgagggtgcgacgctagaaactgtgaaaggtgattttgaacttcaaaaag |
5782052 |
T |
|
| Q |
471 |
tcagctttaattacccaacaagacctcacattcaaattttcaaagatttatgtctatacatccctgccggaaaggtaatcatt |
553 |
Q |
| |
|
||||||||| ||||||||||| ||| | |||||||| ||||||||||| ||||| |||||| || ||||||||||||||| |
|
|
| T |
5782053 |
tcagctttagatacccaacaaggcctaatattcaaatattcaaagatttgtgtcttagcatcccagctggaaaggtaatcatt |
5782135 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 74; E-Value: 2e-33
Query Start/End: Original strand, 15 - 204
Target Start/End: Original strand, 5825920 - 5826109
Alignment:
| Q |
15 |
aaaggtgatggatatgtaccagaagaaatgttcagggccagaaaaacaaggtgttcgttcagggcttgtgagtggtgcaggatttggtttctcttttgtc |
114 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||| |||||||||||||||||| | | || ||||| |||||| |||||| |||||||| ||| | |
|
|
| T |
5825920 |
aaaggtgatggatatgtaccagaaaaaatgttcagcaccagaaaaacaaggtgttaggttgggacttgttagtggtataggattcggtttctcatttttt |
5826019 |
T |
|
| Q |
115 |
gctctatattgcatgagtgctttttgtttctacataggatctgtcctagtgcaacacgggaaagcaacttttcaagaagttttcaaggta |
204 |
Q |
| |
|
|||||||| |||| | |||||| ||||||||||||||||| || || |||||||||| ||||||||||| ||| |||||||||||| |
|
|
| T |
5826020 |
gctctatactgcacaaatgctttctgtttctacataggatcagttcttatgcaacacggcaaagcaactttcggagaggttttcaaggta |
5826109 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #8
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 40 - 206
Target Start/End: Original strand, 5781363 - 5781529
Alignment:
| Q |
40 |
aaatgttcagggccagaaaaacaaggtgttcgttcagggcttgtgagtggtgcaggatttggtttctcttttgtcgctctatattgcatgagtgcttttt |
139 |
Q |
| |
|
|||||||||| |||||| ||||||||||| | | || ||||| ||||||| |||||||||||||| ||| | ||||| || |||| | || ||| | |
|
|
| T |
5781363 |
aaatgttcagcaccagaataacaaggtgttaggttgggacttgttagtggtgtaggatttggtttctaattttttgctctttactgcacaaatgatttct |
5781462 |
T |
|
| Q |
140 |
gtttctacataggatctgtcctagtgcaacacgggaaagcaacttttcaagaagttttcaaggtaca |
206 |
Q |
| |
|
|||||||||||||||| || || || |||| || ||||||||| || ||| | |||||||||||| |
|
|
| T |
5781463 |
gtttctacataggatcagttcttatggaacatggcaaagcaactcttggagaggatttcaaggtaca |
5781529 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 106; Significance: 1e-52; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 106; E-Value: 1e-52
Query Start/End: Original strand, 639 - 796
Target Start/End: Complemental strand, 29327538 - 29327381
Alignment:
| Q |
639 |
agactgctgctttggttggagaaagtggcagtggaaaatcaacagttataagtctcttagagagattttataaccctgactctggacgtatattactaga |
738 |
Q |
| |
|
|||||| |||||||||||||||||| ||||||||||||||||||||||| || |||||||||||||||||| ||||| | || ||||| |||||||||| |
|
|
| T |
29327538 |
agactgttgctttggttggagaaagcggcagtggaaaatcaacagttatcagcctcttagagagattttatgaccctaattccggacgcgtattactaga |
29327439 |
T |
|
| Q |
739 |
tggagtggatataaaaactttcagactaagctggttgagacaacagatgggtttggtt |
796 |
Q |
| |
|
|||||||||||| |||||||||||| ||||||||||||||||||| |||||||||||| |
|
|
| T |
29327438 |
tggagtggatatcaaaactttcagaataagctggttgagacaacaaatgggtttggtt |
29327381 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 72; E-Value: 3e-32
Query Start/End: Original strand, 273 - 520
Target Start/End: Complemental strand, 29327889 - 29327642
Alignment:
| Q |
273 |
ttatgcaggttttctttagtttaactataacagcagtaggcatttcacagtctagtaccttggcacccgacactaataaggccaaagattctgcagcttc |
372 |
Q |
| |
|
|||||||||||||||||||||| || || |||||| | |||| |||||| ||| ||| ||||||||||| ||||||| |||||| |||||||| |
|
|
| T |
29327889 |
ttatgcaggttttctttagtttgacaatgacagcaatgtctgtttcccagtcttctacattgtttcccgacactaacaaggccatagattccgcagcttc |
29327790 |
T |
|
| Q |
373 |
aatatttgaaattctagacagtaaccctactatcgactccagcagcaatgaaggtgtcacattagaaacagtcacaggcgatattgaacttcaacatgtc |
472 |
Q |
| |
|
||||||| | ||||| ||||| || ||| ||| || |||||||||||||| ||||| ||| |||||| ||| ||| | || ||||||||||| ||| |
|
|
| T |
29327789 |
aatatttaacattcttgacagcaaacctgatattgattccagcagcaatgatggtgtaacacaagaaactgtcgttggcaacatcgaacttcaacacgtc |
29327690 |
T |
|
| Q |
473 |
agctttaattacccaacaagacctcacattcaaattttcaaagattta |
520 |
Q |
| |
|
| ||||| ||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
29327689 |
aactttagttacccaacaagacccgacattcaaattttcaaagattta |
29327642 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 14 - 206
Target Start/End: Complemental strand, 29328160 - 29327968
Alignment:
| Q |
14 |
caaaggtgatggatatgtaccagaagaaatgttcagggccagaaaaacaaggtgttcgttcagggcttgtgagtggtgcaggatttggtttctcttttgt |
113 |
Q |
| |
|
||||||||||||| |||||| ||| |||||||| || |||| |||||||||||||| || |||||||| ||||||| |||||||||||| |||||| | |
|
|
| T |
29328160 |
caaaggtgatggacatgtacgggaaaaaatgttctggaccagcgaaacaaggtgttcgctcggggcttgttagtggtgtaggatttggtttatctttttt |
29328061 |
T |
|
| Q |
114 |
cgctctatattgcatgagtgctttttgtttctacataggatctgtcctagtgcaacacgggaaagcaacttttcaagaagttttcaaggtaca |
206 |
Q |
| |
|
||||||||||| | |||||| ||||||||||||||| | ||||||| ||| |||||||||| ||| |||| |||||| |||||| |
|
|
| T |
29328060 |
aattctatattgcacaaatgctttcatcttctacataggatctattttagtgcatcacaggaaagcaacgtttgtagaaattttcagggtaca |
29327968 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0159 (Bit Score: 79; Significance: 2e-36; HSPs: 3)
Name: scaffold0159
Description:
Target: scaffold0159; HSP #1
Raw Score: 79; E-Value: 2e-36
Query Start/End: Original strand, 271 - 553
Target Start/End: Original strand, 27185 - 27467
Alignment:
| Q |
271 |
ttttatgcaggttttctttagtttaactataacagcagtaggcatttcacagtctagtaccttggcacccgacactaataaggccaaagattctgcagct |
370 |
Q |
| |
|
|||| ||||||||||||| ||||||| || |||||| |||| |||| ||| || || | || || || || ||||| ||||||||||||||| ||||| |
|
|
| T |
27185 |
ttttgtgcaggttttcttctgtttaacaattacagcaataggtgtttcgcagactcgtgctttagccccagatactaacaaggccaaagattctacagct |
27284 |
T |
|
| Q |
371 |
tcaatatttgaaattctagacagtaaccctactatcgactccagcagcaatgaaggtgtcacattagaaacagtcacaggcgatattgaacttcaacatg |
470 |
Q |
| |
|
||||||||||||||||||||||| || || || || ||||| || || ||||| |||| || ||||||| || | ||| ||| ||||||||||| | | |
|
|
| T |
27285 |
tcaatatttgaaattctagacagcaaaccaaccattgactcaagtagtaatgagggtgcgacgctagaaactgtgaaaggtgattttgaacttcaaaaag |
27384 |
T |
|
| Q |
471 |
tcagctttaattacccaacaagacctcacattcaaattttcaaagatttatgtctatacatccctgccggaaaggtaatcatt |
553 |
Q |
| |
|
||||||||| ||||||||||| ||| | |||||||| ||||||||||| ||||| |||||| || ||||||||||||||| |
|
|
| T |
27385 |
tcagctttagatacccaacaaggcctaatattcaaatattcaaagatttgtgtcttagcatcccagctggaaaggtaatcatt |
27467 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0159; HSP #2
Raw Score: 74; E-Value: 2e-33
Query Start/End: Original strand, 344 - 553
Target Start/End: Original strand, 35389 - 35598
Alignment:
| Q |
344 |
actaataaggccaaagattctgcagcttcaatatttgaaattctagacagtaaccctactatcgactccagcagcaatgaaggtgtcacattagaaacag |
443 |
Q |
| |
|
||||| ||||||||||||||| |||||||||||||||||||||||||||| || || || || ||||| || || ||||| |||| || ||||||| | |
|
|
| T |
35389 |
actaacaaggccaaagattctacagcttcaatatttgaaattctagacagcaaaccaaccattgactcaagtagtaatgagggtgcgacgctagaaactg |
35488 |
T |
|
| Q |
444 |
tcacaggcgatattgaacttcaacatgtcagctttaattacccaacaagacctcacattcaaattttcaaagatttatgtctatacatccctgccggaaa |
543 |
Q |
| |
|
| | ||| ||| ||||||||||| | |||||||||| ||||||||||| ||| | |||||||| ||||||||||| ||||| |||||| || ||||| |
|
|
| T |
35489 |
tgaaaggtgattttgaacttcaaaaagtcagctttagatacccaacaaggcctaatattcaaatattcaaagatttgtgtcttagcatcccagctggaaa |
35588 |
T |
|
| Q |
544 |
ggtaatcatt |
553 |
Q |
| |
|
|||||||||| |
|
|
| T |
35589 |
ggtaatcatt |
35598 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0159; HSP #3
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 40 - 206
Target Start/End: Original strand, 26695 - 26861
Alignment:
| Q |
40 |
aaatgttcagggccagaaaaacaaggtgttcgttcagggcttgtgagtggtgcaggatttggtttctcttttgtcgctctatattgcatgagtgcttttt |
139 |
Q |
| |
|
|||||||||| |||||| ||||||||||| | | || ||||| ||||||| |||||||||||||| ||| | ||||| || |||| | || ||| | |
|
|
| T |
26695 |
aaatgttcagcaccagaataacaaggtgttaggttgggacttgttagtggtgtaggatttggtttctaattttttgctctttactgcacaaatgatttct |
26794 |
T |
|
| Q |
140 |
gtttctacataggatctgtcctagtgcaacacgggaaagcaacttttcaagaagttttcaaggtaca |
206 |
Q |
| |
|
|||||||||||||||| || || || |||| || ||||||||| || ||| | |||||||||||| |
|
|
| T |
26795 |
gtttctacataggatcagttcttatggaacatggcaaagcaactcttggagaggatttcaaggtaca |
26861 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.0000003; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 651 - 684
Target Start/End: Complemental strand, 29934482 - 29934449
Alignment:
| Q |
651 |
tggttggagaaagtggcagtggaaaatcaacagt |
684 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||| |
|
|
| T |
29934482 |
tggttggagaaagtggaagtggaaaatcaacagt |
29934449 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 651 - 684
Target Start/End: Original strand, 51159544 - 51159577
Alignment:
| Q |
651 |
tggttggagaaagtggcagtggaaaatcaacagt |
684 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||| |
|
|
| T |
51159544 |
tggttggagaaagtggaagtggaaaatcaacagt |
51159577 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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