View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15861_high_3 (Length: 364)
Name: NF15861_high_3
Description: NF15861
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15861_high_3 |
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| [»] chr2 (4 HSPs) |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 352; Significance: 0; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 352; E-Value: 0
Query Start/End: Original strand, 1 - 364
Target Start/End: Original strand, 4314751 - 4315114
Alignment:
| Q |
1 |
tagatgaagcaactctatattatttatatgacatgcacttctagtaattgcctccatgattgccattgtaaccttgaattcattgaaatgatcagaaaca |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||| |
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| T |
4314751 |
tagatgaagcaactctatattatttatatgacatgcacttctagtaattgcctccatgattgcctttgtaaccttgagttcattgaaatgatcagaaaca |
4314850 |
T |
|
| Q |
101 |
catgcccatgcttgaacatcaaatttttgctttatattgtcatggttgtacacagattgggctaaagtagtttttcccacaccacccatgccaactatgg |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4314851 |
catgcccatgcttgaacatcaaatttttgctttatattgtcatggttgtacacagattgggctaaagtagtttttcccacaccacccatgccaactatgg |
4314950 |
T |
|
| Q |
201 |
cgatcacactcacacgagtcttatcatcaacatgatcatcatctaacagtaacttgagcatggccattttgtcttgatccctaccaaataagttagattc |
300 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4314951 |
ggatcacactcacacgagtcttatcatcaacatgatcatcatctaacagtaacttgagcatggccattttgtcttgatccctaccaaataagttagattc |
4315050 |
T |
|
| Q |
301 |
gccggcatctagagaggtggatggagttctccaagaagagtggtggtgagttgcaatatgttga |
364 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4315051 |
gccggcatctagagaggtggatggagttctccaagaagagtggtggtgagttgcaatatgttga |
4315114 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 268; E-Value: 1e-149
Query Start/End: Original strand, 1 - 364
Target Start/End: Original strand, 4305889 - 4306252
Alignment:
| Q |
1 |
tagatgaagcaactctatattatttatatgacatgcacttctagtaattgcctccatgattgccattgtaaccttgaattcattgaaatgatcagaaaca |
100 |
Q |
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|
||||||||||||||||||||||||||||| ||| ||||||||||||| |||||||||||||||| ||||||| |||||||||| |||||| || |||||| |
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| T |
4305889 |
tagatgaagcaactctatattatttatattacaagcacttctagtaactgcctccatgattgcctttgtaactttgaattcatcgaaatggtcggaaaca |
4305988 |
T |
|
| Q |
101 |
catgcccatgcttgaacatcaaatttttgctttatattgtcatggttgtacacagattgggctaaagtagtttttcccacaccacccatgccaactatgg |
200 |
Q |
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|| ||||||||||| |||||||| ||||||||||||||||||| |||||||||| |||||||||| | |||||||||| ||||||||||||||||||| |
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| T |
4305989 |
caagcccatgcttgcacatcaaaattttgctttatattgtcattgttgtacacaaattgggctaatatgatttttcccaccccacccatgccaactatgg |
4306088 |
T |
|
| Q |
201 |
cgatcacactcacacgagtcttatcatcaacatgatcatcatctaacagtaacttgagcatggccattttgtcttgatccctaccaaataagttagattc |
300 |
Q |
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||||||| |||||| |||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||| |
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| T |
4306089 |
ggatcacagtcacacaagtcttatcatcaacatgatcatcatctaacagtaacttgagaatgaccattttgtcttgatccctaccaaataagttagattc |
4306188 |
T |
|
| Q |
301 |
gccggcatctagagaggtggatggagttctccaagaagagtggtggtgagttgcaatatgttga |
364 |
Q |
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| T |
4306189 |
accggcatctagagaggtggatggagttctccaagaagagtggtggtgagttgcaatatgttga |
4306252 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 144; E-Value: 1e-75
Query Start/End: Original strand, 67 - 364
Target Start/End: Complemental strand, 4246550 - 4246269
Alignment:
| Q |
67 |
tgtaaccttgaattcattgaaatgatcagaaacacatgcccatgcttgaacatcaaatttttgctttatattgtcatggttgtacacagattgggctaaa |
166 |
Q |
| |
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||||||||| || |||| |||| |||||| ||||| |||||||||||||||||||||| |||| |||| || |||| ||||| ||||||||||||||| |
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| T |
4246550 |
tgtaaccttcaagtcatcaaaatcatcagagacacaaacccatgcttgaacatcaaatttctgctgtatactg-catgattgtatacagattgggctaaa |
4246452 |
T |
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| Q |
167 |
gtagtttttcccacaccacccatgccaactatggcgatcacactcacacgagtcttatcatcaacatgatcatcatctaacagtaacttgagcatggcca |
266 |
Q |
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|| |||||||||||||||||||||||||||||| ||||||| ||| || |||||||||||||||||||||||| ||| ||||| | |
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| T |
4246451 |
gtgatttttcccacaccacccatgccaactatggggatcacagtcatacaagtcttatcatcaacatgatcatcgtct---------------atggcaa |
4246367 |
T |
|
| Q |
267 |
ttttgtcttgatccctaccaaataagttagattcgccggcatctagagaggtggatggagttctccaagaagagtggtggtgagttgcaatatgttga |
364 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||| ||||||| |
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| T |
4246366 |
ttttgtcttgatccctaccaaataagttagattcgccggcatctagagaggtggatggagttctccaagaagagtggtgatcagttgcaacatgttga |
4246269 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 111; E-Value: 6e-56
Query Start/End: Original strand, 66 - 364
Target Start/End: Complemental strand, 4253669 - 4253383
Alignment:
| Q |
66 |
ttgtaaccttgaattcattgaaatgatcagaaacacatgcccatgcttgaacatcaaatttttgctttatattgtcatggttgtacacagattgggctaa |
165 |
Q |
| |
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||||||| || ||||||| ||||||||| || |||| |||||||||||||||||||| || ||||||||| |||||||||||||||||||||||||||| |
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| T |
4253669 |
ttgtaacattaaattcatcgaaatgatccgaggcacaagcccatgcttgaacatcaaacttctgctttatactgtcatggttgtacacagattgggctaa |
4253570 |
T |
|
| Q |
166 |
agtagtttttcccacaccacccatgccaactatggcgatcacactcacacgagtcttatcatcaacatgatcatcatctaacagtaacttgagcatggcc |
265 |
Q |
| |
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| | |||||||||||||||||||| |||||||||| || |||| | ||||||| || || || |||||||||||||||||| ||||| |||||| |
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| T |
4253569 |
aattgtttttcccacaccacccataccaactatgggga------tcacgcaagtctta-cagca--atcatcatcatctaacagtaatttgagtatggcc |
4253479 |
T |
|
| Q |
266 |
attttgtcttgatccctaccaaataagttagattcgccggcatctagagaggtggatggagttctccaagaagagtggtggtgagttgcaatatgttga |
364 |
Q |
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|||||||| |||||||||||||| ||||||| | ||||||||||||| |||| ||||||||||||||||||||| | |||||||||||||| |
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| T |
4253478 |
tttttgtctgcatccctaccaaatatgttagat---gggtcatctagagaggttgatgaagttctccaagaagagtggtgttcgattgcaatatgttga |
4253383 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 248; Significance: 1e-137; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 248; E-Value: 1e-137
Query Start/End: Original strand, 1 - 364
Target Start/End: Complemental strand, 41933178 - 41932815
Alignment:
| Q |
1 |
tagatgaagcaactctatattatttatatgacatgcacttctagtaattgcctccatgattgccattgtaaccttgaattcattgaaatgatcagaaaca |
100 |
Q |
| |
|
||||||||||||||||||||||||||||| ||| ||||||||||||| |||||||||||||||| |||||||||||||||||| |||||| ||||||||| |
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| T |
41933178 |
tagatgaagcaactctatattatttatattacaagcacttctagtaactgcctccatgattgcctttgtaaccttgaattcatcgaaatggtcagaaaca |
41933079 |
T |
|
| Q |
101 |
catgcccatgcttgaacatcaaatttttgctttatattgtcatggttgtacacagattgggctaaagtagtttttcccacaccacccatgccaactatgg |
200 |
Q |
| |
|
|| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||| |
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| T |
41933078 |
caagcccatgcttgaacatcaaacttttgctttatattgtcatggttgtacacagattgggctaaagtggtttttcccaccccacccatgccaactatgg |
41932979 |
T |
|
| Q |
201 |
cgatcacactcacacgagtcttatcatcaacatgatcatcatctaacagtaacttgagcatggccattttgtcttgatccctaccaaataagttagattc |
300 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||||||||||| ||||||||||| ||||| |||||||| ||| || ||||||| | ||||||| |
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| T |
41932978 |
ggatcacactcacacaagtcttatcatcaacatgatcatcatctaagagtaacttgagtatggcttctttgtctttatctcttccaaatatgctagattc |
41932879 |
T |
|
| Q |
301 |
gccggcatctagagaggtggatggagttctccaagaagagtggtggtgagttgcaatatgttga |
364 |
Q |
| |
|
||| ||||| |||||||| ||||| |||||||||||||||||||||| | | |||||||||||| |
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|
| T |
41932878 |
gccagcatcaagagaggttgatggggttctccaagaagagtggtggtcactagcaatatgttga |
41932815 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 94; Significance: 8e-46; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 94; E-Value: 8e-46
Query Start/End: Original strand, 85 - 336
Target Start/End: Original strand, 34802876 - 34803118
Alignment:
| Q |
85 |
gaaatgatcagaaacacatgcccatgcttgaacatcaaatttttgctttatattgtcatggttgtacacagattgggctaaagtagtttttcccacacca |
184 |
Q |
| |
|
||||||||||| |||||| |||||||||||||| | ||||| | ||||||| |||||||| |||||||||||||||||||||| |||||||| | ||| |
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| T |
34802876 |
gaaatgatcagtaacacaaacccatgcttgaacaccgaatttcttctttatactgtcatggatgtacacagattgggctaaagtggtttttcctattcca |
34802975 |
T |
|
| Q |
185 |
cccatgccaactatggcgatcacactcacacgagtcttatcatcaacatgatcatcatctaacagtaacttgagcatggccattttgtcttgatccctac |
284 |
Q |
| |
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||||||| |||||||| ||| |||||| ||||||||||| | ||| | |||||||||||||||| ||||| || ||| |||||||| |||||| | |
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| T |
34802976 |
cccatgctaactatggggat----ctcaca--agtcttatcattatcatcaccatcatctaacagtaatttgagtatcgcctctttgtctttatccctgc |
34803069 |
T |
|
| Q |
285 |
caaataagttagattcgccggcatctagagaggtggatggagttctccaaga |
336 |
Q |
| |
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|||||| |||| || ||||||||||||||||| ||||||||||||||||| |
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|
| T |
34803070 |
caaatatgttacat---ccggcatctagagaggtagatggagttctccaaga |
34803118 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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