View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15861_high_6 (Length: 250)
Name: NF15861_high_6
Description: NF15861
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15861_high_6 |
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| [»] scaffold0041 (1 HSPs) |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: scaffold0041 (Bit Score: 235; Significance: 1e-130; HSPs: 1)
Name: scaffold0041
Description:
Target: scaffold0041; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 12 - 250
Target Start/End: Complemental strand, 68138 - 67900
Alignment:
| Q |
12 |
atgaagtccaaagttcaaacccttcaaactaatataatcactaacttattgatatttacctataaaattacgaatacacaacaatttcttaactgaagtt |
111 |
Q |
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| T |
68138 |
atgaggtccaaagttcaaacccttcaaactaatataatcactaacttattgatatttacctataaaattacgaatacacaacaatttcttaactgaagtt |
68039 |
T |
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| Q |
112 |
atggggtatagttatgacttaagcttaaattaattgttgacattttgtttgtatctgttttgacacgattatatataatgacaagaactgaacacccatg |
211 |
Q |
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| T |
68038 |
atggggtatagttatgacttaagcttaaattaattgttgacattttgtttgtatctgttttgacacgattatatataatgacaagaactgaacacccatg |
67939 |
T |
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| Q |
212 |
cctttaagctagtattggttgttatgttgagttccaatc |
250 |
Q |
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| T |
67938 |
cctttaagctagtattggttgttatgttgagttccaatc |
67900 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 235; Significance: 1e-130; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 12 - 250
Target Start/End: Original strand, 40898146 - 40898384
Alignment:
| Q |
12 |
atgaagtccaaagttcaaacccttcaaactaatataatcactaacttattgatatttacctataaaattacgaatacacaacaatttcttaactgaagtt |
111 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40898146 |
atgaggtccaaagttcaaacccttcaaactaatataatcactaacttattgatatttacctataaaattacgaatacacaacaatttcttaactgaagtt |
40898245 |
T |
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| Q |
112 |
atggggtatagttatgacttaagcttaaattaattgttgacattttgtttgtatctgttttgacacgattatatataatgacaagaactgaacacccatg |
211 |
Q |
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| T |
40898246 |
atggggtatagttatgacttaagcttaaattaattgttgacattttgtttgtatctgttttgacacgattatatataatgacaagaactgaacacccatg |
40898345 |
T |
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| Q |
212 |
cctttaagctagtattggttgttatgttgagttccaatc |
250 |
Q |
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| T |
40898346 |
cctttaagctagtattggttgttatgttgagttccaatc |
40898384 |
T |
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