View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15861_high_8 (Length: 242)
Name: NF15861_high_8
Description: NF15861
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15861_high_8 |
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| [»] scaffold0041 (1 HSPs) |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: scaffold0041 (Bit Score: 221; Significance: 1e-122; HSPs: 1)
Name: scaffold0041
Description:
Target: scaffold0041; HSP #1
Raw Score: 221; E-Value: 1e-122
Query Start/End: Original strand, 18 - 242
Target Start/End: Original strand, 67626 - 67850
Alignment:
| Q |
18 |
ttaaggttatgcatgttacttggtactagtttgttactcccatatttagataataagacaagcaatgcacttaatatccattttgcactaacacacaaaa |
117 |
Q |
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| T |
67626 |
ttaaggttatgcatgttacttggtactagtttgttactcccatatttagataataagacaagcaatgcacttaatatccattttgcactaacacacgaaa |
67725 |
T |
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| Q |
118 |
acatgctttaaacgcgcgtgcaagcatgcaggaggttcacttcaatttttatacataagttcattccccaattaagaaagagtgattatgcgtttataat |
217 |
Q |
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| T |
67726 |
acatgctttaaacgcgcgtgcaagcatgcaggaggttcacttcaatttttatacataagttcattccccaattaagaaagagtgattatgcgtttataat |
67825 |
T |
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| Q |
218 |
atccaaaatagaggaggacaagaac |
242 |
Q |
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| T |
67826 |
atccaaaatagaggaggacaagaac |
67850 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 221; Significance: 1e-122; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 221; E-Value: 1e-122
Query Start/End: Original strand, 18 - 242
Target Start/End: Complemental strand, 40898658 - 40898434
Alignment:
| Q |
18 |
ttaaggttatgcatgttacttggtactagtttgttactcccatatttagataataagacaagcaatgcacttaatatccattttgcactaacacacaaaa |
117 |
Q |
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| T |
40898658 |
ttaaggttatgcatgttacttggtactagtttgttactcccatatttagataataagacaagcaatgcacttaatatccattttgcactaacacacgaaa |
40898559 |
T |
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| Q |
118 |
acatgctttaaacgcgcgtgcaagcatgcaggaggttcacttcaatttttatacataagttcattccccaattaagaaagagtgattatgcgtttataat |
217 |
Q |
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| T |
40898558 |
acatgctttaaacgcgcgtgcaagcatgcaggaggttcacttcaatttttatacataagttcattccccaattaagaaagagtgattatgcgtttataat |
40898459 |
T |
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| Q |
218 |
atccaaaatagaggaggacaagaac |
242 |
Q |
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| T |
40898458 |
atccaaaatagaggaggacaagaac |
40898434 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 107 - 167
Target Start/End: Complemental strand, 28275591 - 28275530
Alignment:
| Q |
107 |
aacacacaaaaacatgcttt-aaacgcgcgtgcaagcatgcaggaggttcacttcaattttt |
167 |
Q |
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| T |
28275591 |
aacacacaaaaacatgattttaaacgcgcatgcaagcacgcgggaggttcacatgaattttt |
28275530 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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